BAC Information

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BAC

Clone NameB6Ng01-132K02
Chromosome16 (Build37)
Map Location 41,220,787 - 41,413,551
singlet/doubletdoublet
Overlap geneEG667450
Upstream genenone
Downstream geneLsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132K02.bB6Ng01-132K02.g
ACCDH933385DH933386
length1,1561,101
definitionDH933385|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K02, 5' end.DH933386|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,220,787 - 41,221,978)(41,412,428 - 41,413,551)
sequence
gaattcttgcattttctgaacttgtcacaatctaaacatgtcagtcaatc
attgcacaatactcagtaatgtagaatcttttgtgagtgattgtgcaaca
caaaaaggagaatcttcatgggtgaaaatgtttaaatgattctattagca
tagttccaaggaccagaattggaacctacttataaaagacttagagtctt
tttctgttatatagtaaacttaggtttagttctggtagtattccttaata
aaagaactaatgaatgaaataaataaatgagaaaacactaagctactttg
ctattctcaaagctatctactataggcccactgtttcttttctttttttt
cttttcttttctcttcttttcttttcttggatattttatttattttacaa
tagttcttaagaaaattaattacccaccaatgacagggactgaaaagact
tgtgtcgtcgtttacccatgatagaggacgtaacatgcagttgagtgtgt
gtgcctgacaagatgatctccaaggttacctataactctgacatttcaaa
ttctatgaaacagaaagttattgtacttaaagatatcatacacatacaca
catccaaacatacacacatcttgatatttgtattctttaactttaaaaat
agaattactgtgcatatccttagttattctcacaattgccatcttcagaa
aaaaagcactggtgtaaaagtcttctttctataggctgggaaatgtttac
tattagagaagttaactgactttctcaagattatatggtaagaaggtaag
aaaacatgaagtcacacatcatttttttgcatatttgtctctgtatttgc
atcagacatactcatccgtgtgtttctttctgtaacaaatatgccactcc
caacacttttagagagccaccatccttagtattctctctgcatagtcata
tctggtcagtcctgtggtacatgcacaacatgctatcacatctccctgca
ctgttgaagagctctagaggtcaagattgcaagaaagcattccctctctg
acttgtccaattgctccactgctacctggatcaaaataagcattccaaaa
cagaaccatattgttattctgggaaaggtcaacccagaagtcagaatgag
gagaaa
gaattcctagatgactcctcttaggtgaccaagagaaaaatcctttaagg
gtaatagaaactctccaacccttgctcttttctctttaataacagatatg
tccttactcttaagattcctctcttacttggagactggatcatagtaaca
aaccaagtaaccaattctgaaattaataatggctcaaactttgctttgtg
attgacccagagtacagtgggattttctgtaacaattgctacaccgtaga
attcagagtccagcagttgttggaggaagtaagagaagaatccctggtga
gtaagaagatgcctggaatgttctccttctctctgctttgcttcagtttc
ataaagcaaaactgaccatctgagccgatcttaaccttggaacaagttac
ttggccttacctcagctcacagaaccattgccctgccttccgagaatagg
gcctggctatgtttgacatatgatttttgggacttttggggagaagggta
gaatgaggtagtagaagtctggagacaaagttagatcacataggcagtaa
ctgaattaatcaaataatgtaatgagcctctaataaccatgatctaggaa
taaaaactcaggacagcttctatggcttttagtagtccacaaatattact
atgtcaacgttgggaagggaacatgtgtgcaaagataaatccacctgcat
ttttttccattttcaatcttgttctgtgagtcttttcccttgggtactgt
tatataaattttctataataacagagtaataaaaatgggattttctcatc
caggaatcattctctttagttgtcaccttactgttactcatagcaatccc
caaactgaagggatggtgagtgtgaagagccctgctctatatcaagtctt
ctgacaaggacagcatggaagagctgtctcttcagattgcaaattcactc
tctttagtgcatggaatattaaaatgtagtcattaaagccctaagcacaa
aaatctcaatgaaatgtcgcttctattagattctcaatttcccatttctg
gattcattcagaatctaagaacatcagtgggataatttgcatttgccaat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41220787_41221978
seq2: B6Ng01-132K02.b_42_1197

seq1  GAATTCTTGCATTTTCTGAACTTGTCACAATCTAAACATGTCAGTCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATTTTCTGAACTTGTCACAATCTAAACATGTCAGTCAATC  50

seq1  ATTGCACAATACTCAGTAATGTAGAATCTTTTGTGAGTGATTGTGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACAATACTCAGTAATGTAGAATCTTTTGTGAGTGATTGTGCAACA  100

seq1  CAAAAAGGAGAATCTTCATGGGTGAAAATGTTTAAATGATTCTATTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGAGAATCTTCATGGGTGAAAATGTTTAAATGATTCTATTAGCA  150

seq1  TAGTTCCAAGGACCAGAATTGGAACCTACTTATAAAAGACTTAGAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCAAGGACCAGAATTGGAACCTACTTATAAAAGACTTAGAGTCTT  200

seq1  TTTCTGTTATATAGTAAACTTAGGTTTAGTTCTGGTAGTATTCCTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTATATAGTAAACTTAGGTTTAGTTCTGGTAGTATTCCTTAATA  250

seq1  AAAGAACTAATGAATGAAATAAATAAATGAGAAAACACTAAGCTACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTAATGAATGAAATAAATAAATGAGAAAACACTAAGCTACTTTG  300

seq1  CTATTCTCAAAGCTATCTACTATAGGCCCACTGTTTCTTTTCTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCAAAGCTATCTACTATAGGCCCACTGTTTCTTTTCTTTTTTTT  350

seq1  CTTTTCTTTTCTCTTCTTTTCTTTTCTTGGATATTTTATTTATTTTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTCTTCTTTTCTTTTCTTGGATATTTTATTTATTTTACAA  400

seq1  TAGTTCTTAAGAAAATTAATTACCCACCAATGACAGGGACTGAAAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTAAGAAAATTAATTACCCACCAATGACAGGGACTGAAAAGACT  450

seq1  TGTGTCGTCGTTTACCCATGATAGAGGACGTAACATGCAGTTGAGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCGTCGTTTACCCATGATAGAGGACGTAACATGCAGTTGAGTGTGT  500

seq1  GTGCCTGACAAGATGATCTCCAAGGTTACCTATAACTCTGACATTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGACAAGATGATCTCCAAGGTTACCTATAACTCTGACATTTCAAA  550

seq1  TTCTATGAAACAGAAAGTTATTGTACTTAAAGATATCATACACATACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAAACAGAAAGTTATTGTACTTAAAGATATCATACACATACACA  600

seq1  CATCCAAACATACACACATCTTGATATTTGTATTCTTTAACTTTAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAACATACACACATCTTGATATTTGTATTCTTTAACTTTAAAAAT  650

seq1  AGAATTACTGTGCATATCCTTAGTTATTCTCACAATTGCCATCTTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACTGTGCATATCCTTAGTTATTCTCACAATTGCCATCTTCAGAA  700

seq1  AAAAAGCACTGGTGTAAAAGTCTTCTTTCTATAGGCTGGGAAATGTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACTGGTGTAAAAGTCTTCTTTCTATAGGCTGGGAAATGTTTAC  750

seq1  TATTAGAGAAGTTAACTGACTTTCTCAAGATTATATGGTAAGAAGGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGAAGTTAACTGACTTTCTCAAGATTATATGGTAAGAAGGTAAG  800

seq1  AAAACATGAAGTCACACATCATTTTTTTGCATATTTGTCTCTGTATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAACATGAAGTCACACATCATTTTTTTGCATATTTGTCTCTGTA-TTTG  849

seq1  CATCAGACATACTCATCCGTGTGTTTCTTTCTGTAACAAATATGCCACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACATACTCATCCGTGTGTTTCTTTCTGTAACAAATATGCCACTC  899

seq1  CCAACACTTTTAGAGAGCCACCATCCTTAGTATTTCTCTTCTGCATAGTC  950
      |||||||||||||||||||||||||||||||| ||||| |||||||||| 
seq2  CCAACACTTTTAGAGAGCCACCATCCTTAGTA-TTCTC-TCTGCATAGT-  946

seq1  CATATCTGGTCAGTTCCTGTGGTACATGCACAACATGCTATCACAATTCT  1000
      ||||||||||||| |||||||||||||||||||||||||||||||  |||
seq2  CATATCTGGTCAG-TCCTGTGGTACATGCACAACATGCTATCACA--TCT  993

seq1  CCCTGCACTGTTGAAGAGCTCTAGAGGTTCAAGATTGCAAAGAAAGCATT  1050
      ||||||||||||||||||||||||||| |||||||||| |||||||||  
seq2  CCCTGCACTGTTGAAGAGCTCTAGAGG-TCAAGATTGC-AAGAAAGCA--  1039

seq1  TTCCCTTCTTCCTTGACCTGTGCCCATTTGCCTCCACCTGCTACCCTGGA  1100
      |||||    ||  |||| |||  ||| ||| ||||| |||||| ||||| 
seq2  TTCCC----TCTCTGACTTGT--CCAATTG-CTCCA-CTGCTA-CCTGG-  1079

seq1  ATCAAAAATTAAAAGCATTCCAAAACAGACACCATTATTTGTTATTCTGT  1150
      ||||||    | ||||||||||||||||| |||||   ||||||||||| 
seq2  ATCAAA----ATAAGCATTCCAAAACAGA-ACCAT--ATTGTTATTCTGG  1122

seq1  GAGAAGGTGCAAACCTCAGAAAGGTCAAGAATGAGGGAGAAA  1192
      || ||||| |||  | |||||  ||| ||||||| |||||||
seq2  GA-AAGGT-CAA--CCCAGAA--GTC-AGAATGA-GGAGAAA  1156

seq1: chr16_41412428_41413551
seq2: B6Ng01-132K02.g_68_1168 (reverse)

seq1  TATTGGCAAATGCATATATTCCAACTTGATGTTTCCTTGGATTTCTG-AT  49
      |||||||||||||| ||  ||| || |||||||  ||| || ||||| ||
seq2  TATTGGCAAATGCAAATTATCCCAC-TGATGTT--CTTAGA-TTCTGAAT  46

seq1  GAATCAAGAAATTGAGAAAATGAGAATCTAAATAGAAAGCGACATTTCAT  99
      ||||| ||||| || |||| ||||||||| ||||| ||||||||||||| 
seq2  GAATCCAGAAA-TGGGAAATTGAGAATCT-AATAG-AAGCGACATTTCA-  92

seq1  TTGAGATTTTTTTGTGCTGTAAGGGGCTTTTAAATGACTACATTTTAATT  149
      ||||||  |||||||||| ||  |||||||  ||||||||||||||||| 
seq2  TTGAGA--TTTTTGTGCT-TA--GGGCTTT--AATGACTACATTTTAAT-  134

seq1  ATTTCCATGCACTAAAGAGATGTGAATTTTGCAATCTGAAGAGACAGGCT  199
        |||||||||||||||||| ||||| ||||||||||||||||||| |||
seq2  -ATTCCATGCACTAAAGAGA-GTGAA-TTTGCAATCTGAAGAGACA-GCT  180

seq1  CTTCCATGCTGTCCTTTGTCAGAAGACTTGATATTAGAGCAGGGCTCTTC  249
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  CTTCCATGCTGTCC-TTGTCAGAAGACTTGATA-TAGAGCAGGGCTCTTC  228

seq1  ACACTCACCATCCCTTCAGTTTGGGGATTGCTATGAGTAACAGTAAGGTT  299
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACTCACCATCCCTTCAGTTTGGGGATTGCTATGAGTAACAGTAAGG-T  277

seq1  GACAACTTAAGAGAATGATTCCTGGAATGAGAAAATCCCATTTTTATTAC  349
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GACAACTAAAGAGAATGATTCCTGG-ATGAGAAAATCCCATTTTTATTAC  326

seq1  TCTGTTATTATAGAAAATTTATATAACAGTACCCAAGGGAAAAGACTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTATAGAAAATTTATATAACAGTACCCAAGGGAAAAGACTCAC  376

seq1  AGAACAAGATTGAAAATGGAAAAAAATGCAGGTGGATTTATCTTTGCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGATTGAAAATGGAAAAAAATGCAGGTGGATTTATCTTTGCACA  426

seq1  CATGTTCCCTTCCCAACGTTGACATAGTAATATTTGTGGACTACTAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCCTTCCCAACGTTGACATAGTAATATTTGTGGACTACTAAAAG  476

seq1  CCATAGAAGCTGTCCTGAGTTTTTATTCCTAGATCATGGTTATTAGAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAGCTGTCCTGAGTTTTTATTCCTAGATCATGGTTATTAGAGGC  526

seq1  TCATTACATTATTTGATTAATTCAGTTACTGCCTATGTGATCTAACTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACATTATTTGATTAATTCAGTTACTGCCTATGTGATCTAACTTTG  576

seq1  TCTCCAGACTTCTACTACCTCATTCTACCCTTCTCCCCAAAAGTCCCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGACTTCTACTACCTCATTCTACCCTTCTCCCCAAAAGTCCCAAA  626

seq1  AATCATATGTCAAACATAGCCAGGCCCTATTCTCGGAAGGCAGGGCAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATGTCAAACATAGCCAGGCCCTATTCTCGGAAGGCAGGGCAATG  676

seq1  GTTCTGTGAGCTGAGGTAAGGCCAAGTAACTTGTTCCAAGGTTAAGATCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGAGCTGAGGTAAGGCCAAGTAACTTGTTCCAAGGTTAAGATCG  726

seq1  GCTCAGATGGTCAGTTTTGCTTTATGAAACTGAAGCAAAGCAGAGAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATGGTCAGTTTTGCTTTATGAAACTGAAGCAAAGCAGAGAGAAG  776

seq1  GAGAACATTCCAGGCATCTTCTTACTCACCAGGGATTCTTCTCTTACTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATTCCAGGCATCTTCTTACTCACCAGGGATTCTTCTCTTACTTC  826

seq1  CTCCAACAACTGCTGGACTCTGAATTCTACGGTGTAGCAATTGTTACAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAACTGCTGGACTCTGAATTCTACGGTGTAGCAATTGTTACAGA  876

seq1  AAATCCCACTGTACTCTGGGTCAATCACAAAGCAAAGTTTGAGCCATTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCACTGTACTCTGGGTCAATCACAAAGCAAAGTTTGAGCCATTAT  926

seq1  TAATTTCAGAATTGGTTACTTGGTTTGTTACTATGATCCAGTCTCCAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAGAATTGGTTACTTGGTTTGTTACTATGATCCAGTCTCCAAGT  976

seq1  AAGAGAGGAATCTTAAGAGTAAGGACATATCTGTTATTAAAGAGAAAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGAATCTTAAGAGTAAGGACATATCTGTTATTAAAGAGAAAAGA  1026

seq1  GCAAGGGTTGGAGAGTTTCTATTACCCTTAAAGGATTTTTCTCTTGGTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTTGGAGAGTTTCTATTACCCTTAAAGGATTTTTCTCTTGGTCA  1076

seq1  CCTAAGAGGAGTCATCTAGGAATTC  1124
      |||||||||||||||||||||||||
seq2  CCTAAGAGGAGTCATCTAGGAATTC  1101