BAC Information

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BAC

Clone NameB6Ng01-134G12
Chromosome1 (Build37)16 (Build37)
Map Location 170,358,413 - 170,359,60081,982,266 - 81,982,518
singlet/doubletsingletsinglet
Overlap genePbx1
Upstream geneLrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134G12.bB6Ng01-134G12.g
ACCDH934711DH934712
length1,158912
definitionDH934711|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G12, 5' end.DH934712|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(170,358,413 - 170,359,600)(81,982,266 - 81,982,518)
sequence
gaattcttcaaccaagaatcctacccaagacaatgaatgcatcaaggcca
aatgcctaggttaacagttctgtataatctctgtaagggccatagcctag
gagctgtgcctctccctctgtgtgtctgtgtgtgcgcgtgtgttttcaaa
tttaattcatccatgtgttcgaattcattctgcagacgccctgtcttctc
ataaacataagatgcttgaaaggtcttgtgagtagaactgtcaatttata
aaatttcagtccccaagttaaagagtatggaaatgcattgccagggggca
aacatacccagatggggaataaattcatttctctgtgttcacattatggc
tcttgtgcgcacacggcttatttgcaggtgttgaaattcaattatttaca
attaggaccttgcacccactggggaaaaaataaatacaattttgcctttt
agattagtgatttacctgtggttgtgcatgtttgtactgggaatgcactt
gagggacagaacaatgcccttccttctagtttactatagactcacttagc
agaatgatattgttttggaaacaaaatactgatgttatcagctactagct
aagggaattctgtttactaactaaatgtatgtgtaaagataagcagaaac
ccccgggcactcaaaacacattcaattctttttcaatcagttttaaagtt
aaaaaacaaaacaaaccaaaagaaaaaacaaaacaaaacaaaacaaaaaa
aaacaaaaaaacaaaaaaaaacaaaaacaaaaccccacatcctccagaga
ggcagggatcgcatcacaaacatgctctgtacaattgtaacaggggaata
gtaaactcgaaattcaaaccgtacatacacacagcatctaaaatagttat
ggcttactttctgaattaacaatttgcacttcaaatgtagactagttaga
aagaaaagagcttaatagtctagtagttacattttttcagaaaaaaaaag
gtggggggttagcacctagttctcagaaggggttaaaaaacaagatgttc
aatgtattaggattcttttctgggcttaaaaaactttccactagcagttt
ctttgtgacaaccagcccattgcaaagatggagctcatctgagctttgcc
tccacgct
gaattcagcttagctgagactgtcttattaatatcatgagatttttttat
atagatttcctgatttagatatcaggatgaaccttacacaatgatgtaaa
atatatttctttctcttccagcttttggaaatgtttggcaatgattatca
tttgccctttgaatgtttgggtgaatttgccaggaaatccacaaggtccc
agaattcttccacgtatgttcttttttgcatgttttctttcttttttaaa
aaatatttttaattagatattttcctcatttacatttccaatgctatccc
aaaagtcctccataccctccccccactcccctacccacccactccccctt
tttggccctggcgttcccctgtattggggcatataaagtttgcatgtcca
atgggcctctctttccagtgatggccgactaggccatcttttgatacata
tgcagctagagtcaagagctccggggtactgcttagttcataatgttgtt
ccacctatagggttgcagatccctttagctccttgggtactttctctagc
tcctccattgggggccctgtgatccatccaatagctgactgcgagcctcc
acttctgtgtttgctaggccccagtgtagtctcacaagagacagctatat
ctgggtcctttcagtaaaatcttgctagtgtatgcaatggtgtcagtgtt
tggaagctgattatgggatggatccccggatatggtagtctctagatggt
ccatcttttcgtctcagctccaaactttgtctctgtaactccttctatgg
tgttttgttcccaattctaagaggggccaagtgtccacactttggtcttc
gttcttcttgagtttcatgtgtttgcaaattgtatcttgtatctgggtag
tctaagtttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170358413_170359600
seq2: B6Ng01-134G12.b_45_1202

seq1  GAATTCTTCAACCAAGAATCCTACCCAAGACAATGAATGCATCAAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAACCAAGAATCCTACCCAAGACAATGAATGCATCAAGGCCA  50

seq1  AATGCCTAGGTTAACAGTTCTGTATAATCTCTGTAAGGGCCATAGCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAGGTTAACAGTTCTGTATAATCTCTGTAAGGGCCATAGCCTAG  100

seq1  GAGCTGTGCCTCTCCCTCTGTGTGTCTGTGTGTGCGCGTGTGTTTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGCCTCTCCCTCTGTGTGTCTGTGTGTGCGCGTGTGTTTTCAAA  150

seq1  TTTAATTCATCCATGTGTTCGAATTCATTCTGCAGACGCCCTGTCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCATCCATGTGTTCGAATTCATTCTGCAGACGCCCTGTCTTCTC  200

seq1  ATAAACATAAGATGCTTGAAAGGTCTTGTGAGTAGAACTGTCAATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATAAGATGCTTGAAAGGTCTTGTGAGTAGAACTGTCAATTTATA  250

seq1  AAATTTCAGTCCCCAAGTTAAAGAGTATGGAAATGCATTGCCAGGGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGTCCCCAAGTTAAAGAGTATGGAAATGCATTGCCAGGGGGCA  300

seq1  AACATACCCAGATGGGGAATAAATTCATTTCTCTGTGTTCACATTATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCCAGATGGGGAATAAATTCATTTCTCTGTGTTCACATTATGGC  350

seq1  TCTTGTGCGCACACGGCTTATTTGCAGGTGTTGAAATTCAATTATTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCGCACACGGCTTATTTGCAGGTGTTGAAATTCAATTATTTACA  400

seq1  ATTAGGACCTTGCACCCACTGGGGAAAAAATAAATACAATTTTGCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGACCTTGCACCCACTGGGGAAAAAATAAATACAATTTTGCCTTTT  450

seq1  AGATTAGTGATTTACCTGTGGTTGTGCATGTTTGTACTGGGAATGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTGATTTACCTGTGGTTGTGCATGTTTGTACTGGGAATGCACTT  500

seq1  GAGGGACAGAACAATGCCCTTCCTTCTAGTTTACTATAGACTCACTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAGAACAATGCCCTTCCTTCTAGTTTACTATAGACTCACTTAGC  550

seq1  AGAATGATATTGTTTTGGAAACAAAATACTGATGTTATCAGCTACTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGATATTGTTTTGGAAACAAAATACTGATGTTATCAGCTACTAGCT  600

seq1  AAGGGAATTCTGTTTACTAACTAAATGTATGTGTAAAGATAAGCAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTCTGTTTACTAACTAAATGTATGTGTAAAGATAAGCAGAAAC  650

seq1  CCCCGGGCACTCAAAACACATTCAATTCTTTTTCAATCAGTTTTAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGCACTCAAAACACATTCAATTCTTTTTCAATCAGTTTTAAAGTT  700

seq1  AAAAAACAAAACAAACCAAAAGAAAAAACAAAACAAAACAAAACAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAACAAACCAAAAGAAAAAACAAAACAAAACAAAACAAAAAA  750

seq1  AAACAAAAAAACAAAAAAAAACAAAAACAAAACCCCACATCCTCCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAACAAAAAAAAACAAAAACAAAACCCCACATCCTCCAGAGA  800

seq1  GGCAGGGATCGCATCACAAACATGCTCTGTACAATTGTAACAGGGGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGATCGCATCACAAACATGCTCTGTACAATTGTAACAGGGGAATA  850

seq1  GTAAACTCGAAATTCAAACCGTACATACACACAGCATCTAAAATAGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCGAAATTCAAACCGTACATACACACAGCATCTAAAATAGTTAT  900

seq1  GGCTTACTTTCTGAATTAACAAATATGCACTTCAAATGTAGAACTAGTAA  950
      |||||||||||||||||||| ||| |||||||||||||||| |||||| |
seq2  GGCTTACTTTCTGAATTAAC-AATTTGCACTTCAAATGTAG-ACTAGTTA  948

seq1  GAAAGAAAAAGAGCTTAATAGTCTAAGTAGTTACATTTTTTCAAGAAAAA  1000
      ||||| |||||||||||||||||| ||||||||||||||||||   ||||
seq2  GAAAG-AAAAGAGCTTAATAGTCT-AGTAGTTACATTTTTTCA--GAAAA  994

seq1  AAAAAGGTGGGGGGTTAGCAACCTAGTTCTCAGAAGGGGTTAAAAAACAG  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  AAAAAGGTGGGGGGTTAGC-ACCTAGTTCTCAGAAGGGGTTAAAAAACAA  1043

seq1  AATGTTCAATGTATTTAAGA-TCTTTTCTGGGTCTTTAAAAATACTTCCC  1099
       |||||||||||| ||| || ||||||||||| |||  |||| |||| ||
seq2  GATGTTCAATGTA-TTAGGATTCTTTTCTGGG-CTT--AAAAAACTTTCC  1089

seq1  ACTAGTCTTTTTTTTTTTTTTTTTTTTTCACACACAGGCCCAAATGCAAA  1149
      |||||              ||| ||| | |||  |||  || | ||||||
seq2  ACTAG-----------CAGTTTCTTTGTGACAACCAG--CCCATTGCAAA  1126

seq1  GAATTGGCAGCTCATCTAGAAGCTTTGCCTCCCCACGCT  1188
      ||  ||| |||||||||   ||||||||||  |||||||
seq2  GA--TGG-AGCTCATCT--GAGCTTTGCCT--CCACGCT  1158

seq1: chr16_81982266_81982518
seq2: B6Ng01-134G12.g_324_568

seq1  TTTTTATTATTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCC  50
      ||||||     |||| |||||||||||| |||||||||||||||||||||
seq2  TTTTTA-----ATTAGATATTTTCCTCATTTACATTTCCAATGCTATCCC  45

seq1  GAAAGTCTCCCACACCCTCCTCCCTCACTCCCCTACCCACCCATTCCCAT  100
       ||||||  ||| ||||||  ||| |||||||||||||||||| ||||  
seq2  AAAAGTCCTCCATACCCTC--CCCCCACTCCCCTACCCACCCACTCCC-C  92

seq1  TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGA  150
       ||||||||||||||||||||||||| ||||||||||||||||||| || 
seq2  CTTTTTGGCCCTGGCGTTCCCCTGTATTGGGGCATATAAAGTTTGCATGT  142

seq1  CCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATAC  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATAC  192

seq1  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGCTTAGTTCATAATGTT  242

seq1  GTT  253
      |||
seq2  GTT  245