BAC Information

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BAC

Clone NameB6Ng01-135A18
Chromosome16 (Build37)
Map Location 78,627,579 - 78,729,096
singlet/doubletdoublet
Overlap gene4930570E03Rik
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream geneChodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135A18.bB6Ng01-135A18.g
ACCDH935192DH935193
length1,1521,165
definitionDH935192|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A18, 5' end.DH935193|Mus musculus domesticus DNA, BAC clone: B6Ng01-135A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,727,921 - 78,729,096)(78,627,579 - 78,628,757)
sequence
gaattctcttacaacagaataagagaaccacacaaataagaaaggagact
catttctgtctgttgctgaaaatatcattataaaatatggctacccttaa
tctaaaaaaataagaccaccgcgagagctattagtgaagggaaggaaagg
gagtgtttgtcgagaatgtaccatattattattctcttttccttttctta
gttatcaatactcatggggagaaatgtgagcatttgtgggtctgtttcac
ataaacagtttcttgcactcaatttgcaattttaacctggcaaagtgacc
agtactgtgtcagacccacagacattttagagtatattctgaccaacttt
cttagaacgaatatattatgtctactttgaaatatattatgtttgtttac
atattatccatatgtgcacatatgtgtacatgcatgcatgcatgcatgga
tacacaaaaaaatctacaggcaactaaagaatgctgagtgagaaatacag
tcttactcccaatgacaagtaccaccagataatcttaggtctgtcagcca
cccaagtcatgacacagaaagaaatcttttattaattataaaagtttggt
cttagcttaggcttgttcccaccagctcttgtacataaattggcccattt
atactaatctatgtactgccttgtggcttggtacctcttgagtactggca
cttacttcttcctccatgtctggccggtgaatctctcatcccagactctt
tcccagagagcctaactctgccaggatgtgccagctttcttctccttccc
tgctataggcccatcacctctttattaaaccaatcagaatgtgggggaga
agacatttgcaaatcactaagacaggaaatgcttcatacagagattatcc
cagcatcttccccttttgatccataaaaggttctttctctacacacaact
atatataataagaaaatgatgagactatcaggtaaaattacattcacaaa
tccagtcattggtatttgtaaccttggagaaaatatctactctacttaag
ggagtcaaggttctggtcctaagcactttatatcatatctggcatttatc
agccttaacatcttttagacctaaacctttcttaatcatcaacacctaag
ct
gaattcatttgagggatgactaatttattaattccaattagcagactgaa
actccttcattaaatgggaggaaatgtcttcagttttctcccatctcctt
tccaccacagaaaacattaatgagtggcaccatttcttttgaactctgtc
cctttatttgactcttagaaaaaagctctgatggcttcgtctttatttgt
cacctccagatgccaccactggagtcttgatttagtcagtgacctgtcca
gctcctttcctgtcctcacgccaataactcctaatgacttaagtgtcatt
tagttgtaggttggtataaaatataaatggatagagatgtagcttcgtgg
tggtagagtcctgttttaattacttttctgatgctgtgtcaaaaagccgt
gaccaaggcaagaagcaagagtttatttgagtttgtgcttctagaatgca
tggtggtaggtgagggacagcagcaggctgcctatgcagaactctgagag
accaagttttcaaatgcgaacaagaagtacaaggataaaactgtgtgtgg
agctaggctccgacctctcaaagttcggctcaccttcctccgtcaagtcc
ccacctcctaaaagttctcactaccaactagggactgatgtttgaaatgc
ctgaaactcagggaggtgataatttttcatccaaaccaccacacatattt
acttaacacgacctgtttctcccccatccctcacgaagcagaaacctgag
tgtttaagacaggggataaaagcgagaaattgactgaacagatgagccca
gaagagaggtgtcaaataggacttgtgagaacaccaaccagtttgctcta
gcagtttggggacctgggctagcaagtacattcatagaagccccaaagtt
ggggctcaagaatacctggagccatggcaacgttcatcctagcctgtact
acagagatgtcagccatcccacaaagccagatggggtaaggattagagag
aaaacgcctccatttctgaagcagtctaggtaaacacctatcacacccag
gttaaccaatctgccactagcaccgtggccagagtgaagagggggagaag
ggacctccttgctgccagcttcacgccttttgtatctattcgacatggct
cttggcctcatagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_78727921_78729096
seq2: B6Ng01-135A18.b_47_1198 (reverse)

seq1  AGCTTAAGGTGTTGATGATTTAAGAAAGTGTTTTAAGGTCTAAAAAGATG  50
      ||||| |||||||||||| ||||||||| ||||  |||||| ||||||||
seq2  AGCTT-AGGTGTTGATGA-TTAAGAAAG-GTTT--AGGTCT-AAAAGATG  44

seq1  TTTTAAGGCTGATAAATGCAAGATATGATATAAAGTGCTTTAGGGACAGA  100
        ||||||||||||||||| |||||||||||||||||| |||||  ||||
seq2  --TTAAGGCTGATAAATGCCAGATATGATATAAAGTGC-TTAGGACCAGA  91

seq1  ACCTTGAACTCCCTTAGGTAGGAGTAGAATATTTTCTCCAAGGTTTACAA  150
      |||||| ||||||||| ||| |||||| ||||||||||||||| ||||||
seq2  ACCTTG-ACTCCCTTAAGTA-GAGTAG-ATATTTTCTCCAAGG-TTACAA  137

seq1  ATACCAATGGACTGGATTTTGTGAATGTAATTTTTACCTGATAGTTCTCA  200
      |||||||| ||||||| ||||||||||||| ||||||||||||| |||||
seq2  ATACCAAT-GACTGGA-TTTGTGAATGTAA-TTTTACCTGATAG-TCTCA  183

seq1  TCATTTTTCTTATTATATATAGTTTGTTGTTGTTAGAGAAAGAACCTTTT  250
      ||| |||||||||||||||||    |||||   |||||||||||||||||
seq2  TCA-TTTTCTTATTATATATA----GTTGTGTGTAGAGAAAGAACCTTTT  228

seq1  ATTGGATCAAAAGGGGAAGATGCTGGGATAATCTCTTGTATGAAGCATTT  300
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  A-TGGATCAAAAGGGGAAGATGCTGGGATAATCTC-TGTATGAAGCATTT  276

seq1  CCTGTCTTAGTGATTTGCAAATGTCTTCTCCCCCACATTCTGATTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTAGTGATTTGCAAATGTCTTCTCCCCCACATTCTGATTGGTTT  326

seq1  AATAAAGAGGTGATGGGCCTATAGCAGGGAAGGAGAAGAAAGCTGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGGTGATGGGCCTATAGCAGGGAAGGAGAAGAAAGCTGGCACA  376

seq1  TCCTGGCAGAGTTAGGCTCTCTGGGAAAGAGTCTGGGATGAGAGATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGAGTTAGGCTCTCTGGGAAAGAGTCTGGGATGAGAGATTCAC  426

seq1  CGGCCAGACATGGAGGAAGAAGTAAGTGCCAGTACCCAAGAGGTACCAAG  500
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGGCCAGACATGGAGGAAGAAGTAAGTGCCAGTACTCAAGAGGTACCAAG  476

seq1  CCACAAGGCAGTACATAGATTAGTATAAATGGGCCAATTTATGTACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGCAGTACATAGATTAGTATAAATGGGCCAATTTATGTACAAGA  526

seq1  GCTGGTGGGAACAAGCCTAAGCTAAGACCAAACTTTTATAATTAATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGGAACAAGCCTAAGCTAAGACCAAACTTTTATAATTAATAAAA  576

seq1  GATTTCTTTCTGTGTCATGACTTGGGTGGCTGACAGACCTAAGATTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTTCTGTGTCATGACTTGGGTGGCTGACAGACCTAAGATTATCT  626

seq1  GGTGGTACTTGTCATTGGGAGTAAGACTGTATTTCTCACTCAGCATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTACTTGTCATTGGGAGTAAGACTGTATTTCTCACTCAGCATTCTT  676

seq1  TAGTTGCCTGTAGATTTTTTTGTGTATCCATGCATGCATGCATGCATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCCTGTAGATTTTTTTGTGTATCCATGCATGCATGCATGCATGTA  726

seq1  CACATATGTGCACATATGGATAATATGTAAACAAACATAATATATTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTGCACATATGGATAATATGTAAACAAACATAATATATTTCAA  776

seq1  AGTAGACATAATATATTCGTTCTAAGAAAGTTGGTCAGAATATACTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATAATATATTCGTTCTAAGAAAGTTGGTCAGAATATACTCTAA  826

seq1  AATGTCTGTGGGTCTGACACAGTACTGGTCACTTTGCCAGGTTAAAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTGGGTCTGACACAGTACTGGTCACTTTGCCAGGTTAAAATTG  876

seq1  CAAATTGAGTGCAAGAAACTGTTTATGTGAAACAGACCCACAAATGCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAGTGCAAGAAACTGTTTATGTGAAACAGACCCACAAATGCTCA  926

seq1  CATTTCTCCCCATGAGTATTGATAACTAAGAAAAGGAAAAGAGAATAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCCCATGAGTATTGATAACTAAGAAAAGGAAAAGAGAATAATA  976

seq1  ATATGGTACATTCTCGACAAACACTCCCTTTCCTTCCCTTCACTAATAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTACATTCTCGACAAACACTCCCTTTCCTTCCCTTCACTAATAGC  1026

seq1  TCTCGCGGTGGTCTTATTTTTTTAGATTAAGGGTAGCCATATTTTATAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCGGTGGTCTTATTTTTTTAGATTAAGGGTAGCCATATTTTATAAT  1076

seq1  GATATTTTCAGCAACAGACAGAAATGAGTCTCCTTTCTTATTTGTGTGGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCAGCAACAGACAGAAATGAGTCTCCTTTCTTATTTGTGTGGT  1126

seq1  TCTCTTATTCTGTTGTAAGAGAATTC  1176
      ||||||||||||||||||||||||||
seq2  TCTCTTATTCTGTTGTAAGAGAATTC  1152

seq1: chr16_78627579_78628757
seq2: B6Ng01-135A18.g_64_1228

seq1  GAATTCATTTGAGGGATGACTAATTTATTAATTCCAATTAGCAGACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGAGGGATGACTAATTTATTAATTCCAATTAGCAGACTGAA  50

seq1  ACTCCTTCATTAAATGGGAGGAAATGTCTTCAGTTTTCTCCCATCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCATTAAATGGGAGGAAATGTCTTCAGTTTTCTCCCATCTCCTT  100

seq1  TCCACCACAGAAAACATTAATGAGTGGCACCATTTCTTTTGAACTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACAGAAAACATTAATGAGTGGCACCATTTCTTTTGAACTCTGTC  150

seq1  CCTTTATTTGACTCTTAGAAAAAAGCTCTGATGGCTTCGTCTTTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTGACTCTTAGAAAAAAGCTCTGATGGCTTCGTCTTTATTTGT  200

seq1  CACCTCCAGATGCCACCACTGGAGTCTTGATTTAGTCAGTGACCTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAGATGCCACCACTGGAGTCTTGATTTAGTCAGTGACCTGTCCA  250

seq1  GCTCCTTTCCTGTCCTCACGCCAATAACTCCTAATGACTTAAGTGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTCCTGTCCTCACGCCAATAACTCCTAATGACTTAAGTGTCATT  300

seq1  TAGTTGTAGGTTGGTATAAAATATAAATGGATAGAGATGTAGCTTCGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTAGGTTGGTATAAAATATAAATGGATAGAGATGTAGCTTCGTGG  350

seq1  TGGTAGAGTCCTGTTTTAATTACTTTTCTGATGCTGTGTCAAAAAGCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGTCCTGTTTTAATTACTTTTCTGATGCTGTGTCAAAAAGCCGT  400

seq1  GACCAAGGCAAGAAGCAAGAGTTTATTTGAGTTTGTGCTTCTAGAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGCAAGAAGCAAGAGTTTATTTGAGTTTGTGCTTCTAGAATGCA  450

seq1  TGGTGGTAGGTGAGGGACAGCAGCAGGCTGCCTATGCAGAACTCTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAGGTGAGGGACAGCAGCAGGCTGCCTATGCAGAACTCTGAGAG  500

seq1  ACCAAGTTTTCAAATGCGAACAAGAAGTACAAGGATAAAACTGTGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTTTCAAATGCGAACAAGAAGTACAAGGATAAAACTGTGTGTGG  550

seq1  AGCTAGGCTCCGACCTCTCAAAGTTCGGCTCACCTTCCTCCGTCAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTCCGACCTCTCAAAGTTCGGCTCACCTTCCTCCGTCAAGTCC  600

seq1  CCACCTCCTAAAAGTTCTCACTACCAACTAGGGACTGATGTTTGAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTAAAAGTTCTCACTACCAACTAGGGACTGATGTTTGAAATGC  650

seq1  CTGAAACTCAGGGAGGTGATAATTTTTCATCCAAACCACCACACATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTCAGGGAGGTGATAATTTTTCATCCAAACCACCACACATATTT  700

seq1  ACTTAACACGACCTGTTTCTCCCCCATCCCTCAGGAAGCAGAAACCTGAG  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTAACACGACCTGTTTCTCCCCCATCCCTCACGAAGCAGAAACCTGAG  750

seq1  TGTTTAAGACAGGGGATAAAAGCGAGAAATTGACTGAACAGATGAGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGACAGGGGATAAAAGCGAGAAATTGACTGAACAGATGAGCCCA  800

seq1  GAAGAGAGGTGTCAAATAGGACTTGTGAGAACACCAACCAGTTTGCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGTGTCAAATAGGACTTGTGAGAACACCAACCAGTTTGCTCTA  850

seq1  GCAGTTTTGGGGACCTGGGCTAGCAGGTACATTCATAGAAGCCCCAAAGG  900
      |||| |||||||||||||||||||| |||||||||||||||||||||| |
seq2  GCAG-TTTGGGGACCTGGGCTAGCAAGTACATTCATAGAAGCCCCAAA-G  898

seq1  TTGGGGCATCAGGAATACCTGGAGCCATGGCAACGTTCATCCTAGCCTTG  950
      ||||||| ||| ||||||||||||||||||||||||||||||||||| ||
seq2  TTGGGGC-TCAAGAATACCTGGAGCCATGGCAACGTTCATCCTAGCC-TG  946

seq1  TACTACAGAGATGTCAGCCATCCCACAAAAGCCAGATGGGGTAAAGAATT  1000
      |||||||||||||||||||||||||| ||||||||||||||| ||| |||
seq2  TACTACAGAGATGTCAGCCATCCCAC-AAAGCCAGATGGGGT-AAGGATT  994

seq1  AGAGAGAAAACG-CTCCATTTCTGAAGCAGTTCTTAGGGTAAAACACCTA  1049
      |||||||||||| ||||||||||||||||||   ||||   |||||||||
seq2  AGAGAGAAAACGCCTCCATTTCTGAAGCAGT--CTAGG--TAAACACCTA  1040

seq1  TCACACCACGTTTACACAATTCTGCCACTAAGCA-CGTGGCAAGAAGT--  1096
      |||||||  | ||| || | ||||||||| |||| |||||| || |||  
seq2  TCACACCCAGGTTA-ACCAATCTGCCACT-AGCACCGTGGCCAG-AGTGA  1087

seq1  -GAGGGGGAG-AGGGACACTCTTGCTGCCAGCTTTCACGCTTTTTGTTAT  1144
       ||||||||| ||||||   |||||||||||| ||||||| ||||| |||
seq2  AGAGGGGGAGAAGGGACCTCCTTGCTGCCAGC-TTCACGCCTTTTG-TAT  1135

seq1  CCTATTCTGACCATGGCTCTTTGGGCCTCATAGCC  1179
       |||||| || ||||||||||  ||||||||||||
seq2  -CTATTC-GA-CATGGCTCTT--GGCCTCATAGCC  1165