BAC Information

Click to search

BAC

Clone NameB6Ng01-141K11
Chromosome16 (Build37)
Map Location 16,523,327 - 16,645,590
singlet/doubletdoublet
Overlap geneFgd4
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141K11.bB6Ng01-141K11.g
ACCDH940056DH940057
length9701,085
definitionDH940056|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K11, 5' end.DH940057|Mus musculus domesticus DNA, BAC clone: B6Ng01-141K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,645,011 - 16,645,590)(16,523,327 - 16,524,131)
sequence
gaattccacattctgagtaacagcctgctcatgaaagtgacagaaataaa
caattatggtgcatattgatgttaagaaactggaactagaaggttgtgtt
ggagaaatgcctaggttgataaatacgtgtcaaatgaggaaccatgtact
tatctccaaacccatatgcaaagtagggtacagtagctcacagtggcaat
ccctactcctgagagatgtgagaaggagattagtcttccttcttcttgag
tttcatgtgttttgaaaattgtatattgggtattctaagtttctgggata
atatatgcttatgagtgagtgcatatcatgtgtgttcttttgtgattggg
ttacctcactcaggatgatatcctccagatccattcatttgtctaagaat
ttcataaattcattgtttttaatagctgagtagtactccattttgtcaat
gtaccacattttctctatccattcttctgttgagggacatctgggttctt
tccagtttctggctattataaataagggtgctatgaacatagtggaacat
gtgtccttattacaagttggaacatcttctgggtatatgcccaggagtgg
tattgctggatcttctggtagtattatgtccaattttctgaggaaccgcc
agactgatttccagagtggttgtaccagcttgacatcccaccagcaatgg
aggagtgttcctctttctccacatcctcgccagcatgtactgtcacctga
atttttgatcttagccattctgactggtgtgaggtggaatctcagagttg
ttttgatttgcatttccctgatgattaaggatgttgacattttttcagtg
tgtggatactttgtttcttcttagaatggggaacaaaatacccatggaaa
gagtacagagacgtaaaaacttcagagctgagatggaaggaaggaccatc
cagaagactgccccacctgg
gaattcagtgagaaggttacctattcagtaacattcaaatttacttctag
tagagacagtgaaactaattaggcattacaaagaacggagccagaatagc
tcagagctagactgcagagtgattacttaggacagtagccagtctcatcc
aaacaagggaatacacaatggcctagctattaggtgggtttaccatgtaa
gagttagggaatcccactgagacagggatcttctctacagccaggtatag
caggctacattgcacattagaagcaagttggtgaattcttctgataaatg
attcaccatagatacttaaaagaacagccaagttacactcatacaagaat
ttatcaaggccttggaaataggggggttgtggtattgcattattcatgag
aaggtctgctagagcagaatcccctggtgctagctttcacaaggctcaaa
ggagtagcacaaattatgactagggtgtgaaattcttacctgtcattagc
tgaccctaagcagagctgttttatctttactgtaaatattatctggttcc
tgtaagtccttttgaagtcattcctttgttttgtgtcaggtaacttcaat
gtactttgcctgctgtgacatccctaaccctctgttttctgtattatata
agactggtgtacactttgtgaaaatacattcagattctacacaaccttct
tgtgtgattttgtctgtcattcgccaactccttgtccacttgcaactaga
gacccattctatgcagacagggaccaaaaggttctgcagcactgggagag
gctgaatttatcaattcatgtccacatgactgaacctgtcaatgacaatt
tcccacagctttgagtgactatgcatacccacatgtcagagtggagccgt
gtcctgacacacttctgtgcctttattgtaacttgacagaatagaagttt
tctgagtctgtgagccttctatcagtatggacataagcaagaaaagaacc
ttcatcacagcagctggtcagaagggaaacaagcttgtggatttgtgtat
taactctctgagttctgagctatctctaggggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16645011_16645590
seq2: B6Ng01-141K11.b_49_628 (reverse)

seq1  AGAAGATGTTCCAACTTGTAATAAGGACACATGTTCCACTATGTTCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTTCCAACTTGTAATAAGGACACATGTTCCACTATGTTCATAG  50

seq1  CACCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGTCCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGTCCCTCA  100

seq1  ACAGAAGAATGGATAGAGAAAATGTGGTACATTGACAAAATGGAGTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAATGGATAGAGAAAATGTGGTACATTGACAAAATGGAGTACTA  150

seq1  CTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGACAAATGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTATTAAAAACAATGAATTTATGAAATTCTTAGACAAATGAATGG  200

seq1  ATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACA  250

seq1  CATGATATGCACTCACTCATAAGCATATATTATCCCAGAAACTTAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATGCACTCACTCATAAGCATATATTATCCCAGAAACTTAGAATA  300

seq1  CCCAATATACAATTTTCAAAACACATGAAACTCAAGAAGAAGGAAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATACAATTTTCAAAACACATGAAACTCAAGAAGAAGGAAGACTA  350

seq1  ATCTCCTTCTCACATCTCTCAGGAGTAGGGATTGCCACTGTGAGCTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTCTCACATCTCTCAGGAGTAGGGATTGCCACTGTGAGCTACTG  400

seq1  TACCCTACTTTGCATATGGGTTTGGAGATAAGTACATGGTTCCTCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACTTTGCATATGGGTTTGGAGATAAGTACATGGTTCCTCATTTG  450

seq1  ACACGTATTTATCAACCTAGGCATTTCTCCAACACAACCTTCTAGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTATTTATCAACCTAGGCATTTCTCCAACACAACCTTCTAGTTCCA  500

seq1  GTTTCTTAACATCAATATGCACCATAATTGTTTATTTCTGTCACTTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAACATCAATATGCACCATAATTGTTTATTTCTGTCACTTTCAT  550

seq1  GAGCAGGCTGTTACTCAGAATGTGGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  GAGCAGGCTGTTACTCAGAATGTGGAATTC  580

seq1: chr16_16523327_16524131
seq2: B6Ng01-141K11.g_361_1153

seq1  GATAAATGATTCACCATAGATACTTAAAAGAACAGCCAAGTTACACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGATTCACCATAGATACTTAAAAGAACAGCCAAGTTACACTCAT  50

seq1  ACAAGAATTTATCAAGGCCTTGGAAATAGGGGGGTTGTGGTATTGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTTATCAAGGCCTTGGAAATAGGGGGGTTGTGGTATTGCATTA  100

seq1  TTCATGAGAAGGTCTGCTAGAGCAGAATCCCCTGGTGCTAGCTTTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGAAGGTCTGCTAGAGCAGAATCCCCTGGTGCTAGCTTTCACAA  150

seq1  GGCTCAAAGGAGTAGCACAAATTATGACTAGGGTGTGAAATTCTTACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAGGAGTAGCACAAATTATGACTAGGGTGTGAAATTCTTACCTG  200

seq1  TCATTAGCTGACCCTAAGCAGAGCTGTTTTATCTTTACTGTAAATATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCTGACCCTAAGCAGAGCTGTTTTATCTTTACTGTAAATATTAT  250

seq1  CTGGTTCCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTA  300

seq1  ACTTCAATGTACTTTGCCTGCTGTGACAT-CCTAACCCTCTGTTTTCTGT  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTTCAATGTACTTTGCCTGCTGTGACATCCCTAACCCTCTGTTTTCTGT  350

seq1  ATTATATAAGACTGGTGTACACTTTGTGAAAATACATTCAGATTCTACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAGACTGGTGTACACTTTGTGAAAATACATTCAGATTCTACAC  400

seq1  AACC-TCTTGTGTTGATTTTGTCTGTCATTCGCCAACTCCTTGTCCACTT  448
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTTGTG-TGATTTTGTCTGTCATTCGCCAACTCCTTGTCCACTT  449

seq1  GCAACTAGAGACCCATTCTATGCAGACAGGGACCAAAAGGGTCTGCAGCA  498
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCAACTAGAGACCCATTCTATGCAGACAGGGACCAAAAGGTTCTGCAGCA  499

seq1  CTGGGAGAGGCTGAATTTATCAATTCATGTCCACATGACTGAACCTGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGGCTGAATTTATCAATTCATGTCCACATGACTGAACCTGTCA  549

seq1  ATGACAATTTCCCACAGCTTTGAGGTGACTATGCATACCCACATGTCAGG  598
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ATGACAATTTCCCACAGCTTTGA-GTGACTATGCATACCCACATGTCAG-  597

seq1  AGGTGGAGCCCGTGTCCTGACACACTTCTGTGCCTTTATTGTAACTTTGA  648
        |||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  -AGTGGAG-CCGTGTCCTGACACACTTCTGTGCCTTTATTGTAAC-TTGA  644

seq1  CAGTATAGAGTTTTCCTGAGTTCTGTGAGCCATTCTATCAAGTCATGGAC  698
      ||| |||||  ||| ||||| |||||||||| ||||||| ||| ||||||
seq2  CAGAATAGAAGTTTTCTGAG-TCTGTGAGCC-TTCTATC-AGT-ATGGAC  690

seq1  ATTAGCAAGAAACAGAACCTTCCACACAGCCAGCTGGTCAGAAGGGGAAG  748
      || ||||||||| |||||||||  ||||| ||||||||||||| ||||| 
seq2  ATAAGCAAGAAA-AGAACCTTCATCACAG-CAGCTGGTCAGAA-GGGAAA  737

seq1  CAGTCTTGTGGATCTGTGTATTTAACCTCTGAGTTCTGAGGCTAACTCTA  798
      ||  ||||||||| |||||||| |  ||||||||||||| |||| |||||
seq2  CAAGCTTGTGGATTTGTGTATTAACTCTCTGAGTTCTGA-GCTATCTCTA  786

seq1  GGGGATC  805
      |||||||
seq2  GGGGATC  793