BAC Information

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BAC

Clone NameB6Ng01-141M22
Chromosome16 (Build37)
Map Location 13,847,701 - 13,959,943
singlet/doubletdoublet
Overlap genePdxdc1, Mpv17l
Upstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1
Downstream geneIfitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141M22.bB6Ng01-141M22.g
ACCDH940166DH940167
length1,152944
definitionDH940166|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M22, 5' end.DH940167|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,847,701 - 13,848,914)(13,958,991 - 13,959,943)
sequence
gaattcactctgtagatcaggctagtatcccagctcacagcctgcctctg
tctccctagtgctaggattaaaggcctatacctccacacctggcataaaa
aaatttttaatcacctacctgaggctggtaattcctggaaaaacctgaac
accactactggagaactgagctcatcttccacctgcaaaaagagaactgt
gctgttacaacactgaagatagggctaaacatcagcgggataagacagta
tctttggaaagaaaataggcagaaatgctgcttatacacaaacattaaaa
ggctcaaagggtgtaactggcctgaggtgaccaatgaaaatgatggtccc
tccctctcttgacccaacagactctatgaagtcatgcataaacgagcaac
ttaaaaaaaaaaagtgtatgagttaaccaagttatgcttggtacccacag
aggcccgaaaaggatactggatatcctggaaatggagtttcagaatagtg
tgagccattatataggtgctgagaaccaaacctgggtcttttgcaagaaa
agcaactgttcctaactgcagagtcatttcttcagcctaaatcaagaact
ttttatactcaggaatttaaaagaaaatctttcattatcttttataacag
aacaatatgagcaatgctcatactggcagcttaaaaactaccagggtatt
gtcagacgagtggctcaatgtctctcctaatagatgacaatgataacact
gcagagtagactgcattactctggcatcatgtacttccctctccacagtc
agccaaccaccaggctttaccacacaaccaagcaacaatctgaggcaggc
ttttttgttgggatcagctctggggatgctttctttcagtatttaacagt
tgtaatctatcactgaagctttgaatccttttgtaataaatatgctgtgg
ctgataactatcagtaaaccacaacaaggaagtttcctatgcccacacag
gagcagctgggcccatcgatttttctaccttttttagtatggtttggaga
gagaaggtttacttggtagctggcctgaactcatattaaacagctgactt
gaacctaagtaatcgccccgtccttctgtcctccaagggctgagataagt
gg
gaattcattaactgaagaaaatgacatgcaaacagagcaggcatacatca
gggacagggctcaattacactgaattgctagtaagccttaggactgaaag
caccaaagtactaggagcacagactgcaccagtcacaatgcatgccaggg
gccactcattttcctggtacatttcccaccagatacacctttctatagcc
cagaactgtctagcccacaatgttctttggtgcagactgccctgtttaat
gcgtaaaaagggaagacaaagcctttggagctgacactgaaatggagcag
gctccaggactcccaccagcctacccaacccctgctggagagtgtagaca
gcaataacccagcaacaataaggtttgatctgcacataaaaggaagcaag
acaagaggtcctataggagacaacagagcaaatgtcctggggaggaaagg
agcaggatgctctgatgggacagaaatggccaggctatgtggagaaaaca
gaatagagatgataaaatattaattgggactgttcatatttgtctatatg
gtttgcctcagaaaggattctcttaagtgctgggaggccaactcaaggct
ttgtcatgatgatagaggactttaagcaggacataaataactctcttaca
ggagaacacagctaaacatctagaagcccttaaagaggagacacaaaaat
cacataaagaattacaggaaaacacaaataaacaggtgaaggaattgaac
aaaaccatccaggatctaaaaatggaaatagaaacaataaagaaataaca
aagggagacaacctctggagatagaaaacctaggaagagatcaggagtca
tagatgcaagcatcatcaacagatacaagagatagaaaagagatctcagg
cagagtaccatagacatcattgacacacagtcaagaaatgcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_13847701_13848914
seq2: B6Ng01-141M22.b_49_1200

seq1  GAATTCACTCTGTAGATCAGGCTAGTATCCCAGCTCACAGCCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCAGGCTAGTATCCCAGCTCACAGCCTGCCTCTG  50

seq1  TCTCCCTAGTGCTAGGATTAAAGGCCTATACCTCCACACCTGGCATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAGTGCTAGGATTAAAGGCCTATACCTCCACACCTGGCATAAAA  100

seq1  AAATTTTTAATCACCTACCTGAGGCTGGTAATTCCTGGAAAAACCTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAATCACCTACCTGAGGCTGGTAATTCCTGGAAAAACCTGAAC  150

seq1  ACCACTACTGGAGAACTGAGCTCATCTTCCACCTGCAAAAAGAGAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTACTGGAGAACTGAGCTCATCTTCCACCTGCAAAAAGAGAACTGT  200

seq1  GCTGTTACAACACTGAAGATAGGGCTAAACATCAGCGGGATAAGACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACAACACTGAAGATAGGGCTAAACATCAGCGGGATAAGACAGTA  250

seq1  TCTTTGGAAAGAAAATAGGCAGAAATGCTGCTTATACACAAACATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAAAGAAAATAGGCAGAAATGCTGCTTATACACAAACATTAAAA  300

seq1  GGCTCAAAGGGTGTAACTGGCCTGAGGTGACCAATGAAAATGATGGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAGGGTGTAACTGGCCTGAGGTGACCAATGAAAATGATGGTCCC  350

seq1  TCCCTCTCTTGACCCAACAGACTCTATGAAGTCATGCATAAACGAGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTGACCCAACAGACTCTATGAAGTCATGCATAAACGAGCAAC  400

seq1  TTAAAAAAAAAAAGTGTATGAGTTAACCAAGTTATGCTTGGTACCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAGTGTATGAGTTAACCAAGTTATGCTTGGTACCCACAG  450

seq1  AGGCCCGAAAAGGATACTGGATATCCTGGAAATGGAGTTTCAGAATAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCGAAAAGGATACTGGATATCCTGGAAATGGAGTTTCAGAATAGTG  500

seq1  TGAGCCATTATATAGGTGCTGAGAACCAAACCTGGGTCTTTTGCAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATTATATAGGTGCTGAGAACCAAACCTGGGTCTTTTGCAAGAAA  550

seq1  AGCAACTGTTCCTAACTGCAGAGTCATTTCTTCAGCCTAAATCAAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGTTCCTAACTGCAGAGTCATTTCTTCAGCCTAAATCAAGAACT  600

seq1  TTTTATACTCAGGAATTTAAAAGAAAATCTTTCATTATCTTTTATAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACTCAGGAATTTAAAAGAAAATCTTTCATTATCTTTTATAACAG  650

seq1  AACAATATGAGCAATGCTCATACTGGCAGCTTAAAAACTACCAGGGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGAGCAATGCTCATACTGGCAGCTTAAAAACTACCAGGGTATT  700

seq1  GTCAGACGAGTGGCTCAATGTCTCTCCTAATAGATGACAATGATAACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACGAGTGGCTCAATGTCTCTCCTAATAGATGACAATGATAACACT  750

seq1  GCAGAGTAGACTGCATTACTCTGGCATCATGTACTTCCCTCTCCACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAGACTGCATTACTCTGGCATCATGTACTTCCCTCTCCACAGTC  800

seq1  AGCCAACCACCAGGCTTTACCACACAACCAAGCAACAATCTGAGGCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCACCAGGCTTTACCACACAACCAAGCAACAATCTGAGGCAGGC  850

seq1  TTTTTTGTTGGGATCAGCTCTGGGGATGCTTTCTTTCAGTATTTAACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGGGATCAGCTCTGGGGATGCTTTCTTTCAGTATTTAACAGT  900

seq1  TGTAATCTATCACTGAAGCTTTGAATCCTTTTGTAATTAAATTATGCTGT  950
      |||||||||||||||||||||||||||||||||||||  || ||||||||
seq2  TGTAATCTATCACTGAAGCTTTGAATCCTTTTGTAAT--AAATATGCTGT  948

seq1  GGCTGATAAACTTATCAGTAAAACCACAACAAGGAAGTTT-CTATGCACA  999
      |||||||||   ||||||| |||||||||||||||||||| |||||| ||
seq2  GGCTGATAA--CTATCAGT-AAACCACAACAAGGAAGTTTCCTATGCCCA  995

seq1  CACAGGAAGCAGCT-GGCCCATCGATTTTTCTAACTTTTTTTAGGTTATT  1048
      |||||| ||||||| ||||||||||||||||| || ||||||||  ||| 
seq2  CACAGG-AGCAGCTGGGCCCATCGATTTTTCT-ACCTTTTTTAG--TATG  1041

seq1  GTTTTGAGAGAGAAGGTTTTACTGTGTAGCTGGCCTGGAACTCAGTATGT  1098
      |||| ||||||||||| ||||||  ||||||||||| ||||||| ||| |
seq2  GTTTGGAGAGAGAAGG-TTTACTTGGTAGCTGGCCT-GAACTCA-TAT-T  1087

seq1  AAACCAGGCTGGTCTTGAACTTAAGAGTAATCGCCC--TGCTTCTGTCTC  1146
      ||||   ||| | ||||||| ||  |||||||||||  | ||||||||  
seq2  AAAC--AGCT-GACTTGAACCTA--AGTAATCGCCCCGTCCTTCTGTCCT  1132

seq1  CCAAGTGCTGAGATTAAAGGTGTGTACTACCAGGCCTGGCTCTACTAATA  1196
      ||||| |||||||| |  ||                              
seq2  CCAAGGGCTGAGATAAGTGG------------------------------  1152

seq1  CTCTAAGGAGATAAGTGG  1214
                        
seq2  ------------------  1152

seq1: chr16_13958991_13959943
seq2: B6Ng01-141M22.g_69_1012 (reverse)

seq1  TTTGCATTTTCTTTGACTGTTGTGTCAATGTTGTCTATGGTAACTTCTGC  50
      |||||||||   ||||||| |||||||||| |||||||||||   |||| 
seq2  TTTGCATTT--CTTGACTG-TGTGTCAATGATGTCTATGGTA--CTCTG-  44

seq1  CCCTGAGATTCTCTTTTCTATCTCTTGTATTCTGTTGATGATGCTTGCAT  100
       ||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  -CCTGAGA-TCTCTTTTCTATCTCTTGTA-TCTGTTGATGATGCTTGCAT  91

seq1  CTATGACTCCTGATCTCTTTCCTAGGTTTTCTATCTCCAG-GGTTGTCTC  149
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  CTATGACTCCTGATCTC-TTCCTAGGTTTTCTATCTCCAGAGGTTGTCTC  140

seq1  CCTTTGTTATTTCTTTATTGTTTCTATTTCCATTTTTAGATCCTGGATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTATTTCTTTATTGTTTCTATTTCCATTTTTAGATCCTGGATGG  190

seq1  TTTTGTTCAATTCCTTCACCTGTTTATTTGTGTTTTCCTGTAATTCTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCAATTCCTTCACCTGTTTATTTGTGTTTTCCTGTAATTCTTTA  240

seq1  TGTGATTTTTGTGTCTCCTCTTTAAGGGCTTCTAGATGTTTAGCTGTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTGTGTCTCCTCTTTAAGGGCTTCTAGATGTTTAGCTGTGTT  290

seq1  CTCCTGTAAGGGAGTTATTTATGTCCTGCTTAAAGTCCTCTATCATCATG  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAAGAGAGTTATTTATGTCCTGCTTAAAGTCCTCTATCATCATG  340

seq1  ACAAAGCCTTGAGTTGGCCTCCCAGCACTTAAGAGAATCCTTTCTGAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCTTGAGTTGGCCTCCCAGCACTTAAGAGAATCCTTTCTGAGGC  390

seq1  AAACCATATAGACAAATATGAACAGTCCCAATTAATATTTTATCATCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATAGACAAATATGAACAGTCCCAATTAATATTTTATCATCTCT  440

seq1  ATTCTGTTTTCTCCACATAGCCTGGCCATTTCTGTCCCATCAGAGCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTTCTCCACATAGCCTGGCCATTTCTGTCCCATCAGAGCATCC  490

seq1  TGCTCCTTTCCTCCCCAGGACATTTGCTCTGTTGTCTCCTATAGGACCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTCCTCCCCAGGACATTTGCTCTGTTGTCTCCTATAGGACCTC  540

seq1  TTGTCTTGCTTCCTTTTATGTGCAGATCAAACCTTATTGTTGCTGGGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGCTTCCTTTTATGTGCAGATCAAACCTTATTGTTGCTGGGTTA  590

seq1  TTGCTGTCTACACTCTCCAGCAGGGGTTGGGTAGGCTGGTGGGAGTCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCTACACTCTCCAGCAGGGGTTGGGTAGGCTGGTGGGAGTCCTG  640

seq1  GAGCCTGCTCCATTTCAGTGTCAGCTCCAAAGGCTTTGTCTTCCCTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCTCCATTTCAGTGTCAGCTCCAAAGGCTTTGTCTTCCCTTTTT  690

seq1  ACGCATTAAACAGGGCAGTCTGCACCAAAGAACATTGTGGGCTAGACAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTAAACAGGGCAGTCTGCACCAAAGAACATTGTGGGCTAGACAGT  740

seq1  TCTGGGCTATAGAAAGGTGTATCTGGTGGGAAATGTACCAGGAAAATGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTATAGAAAGGTGTATCTGGTGGGAAATGTACCAGGAAAATGAG  790

seq1  TGGCCCCTGGCATGCATTGTGACTGGTGCAGTCTGTGCTCCTAGTACTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTGGCATGCATTGTGACTGGTGCAGTCTGTGCTCCTAGTACTTT  840

seq1  GGTGCTTTCAGTCCTAAGGCTTACTAGCAATTCAGTGTAATTGAGCCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTCAGTCCTAAGGCTTACTAGCAATTCAGTGTAATTGAGCCCTG  890

seq1  TCCCTGATGTATGCCTGCTCTGTTTGCATGTCATTTTCTTCAGTTAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATGTATGCCTGCTCTGTTTGCATGTCATTTTCTTCAGTTAATGA  940

seq1  ATTC  953
      ||||
seq2  ATTC  944