BAC Information

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BAC

Clone NameB6Ng01-143O02
Chromosome16 (Build37)
Map Location 97,864,191 - 97,985,975
singlet/doubletdoublet
Overlap geneRipk4
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2
Downstream genePrdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143O02.bB6Ng01-143O02.g
ACCDH941703DH941704
length4241,039
definitionDH941703|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O02, 5' end.DH941704|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,864,191 - 97,864,619)(97,984,938 - 97,985,975)
sequence
tcttctagtgctgacaatgggcacaatgactgcaggggagaagagactgg
agacggatttgtgacctagatgggtcagggaagggcaggactacaccttg
accagacctgcttaaatttgccttctatttaaacctagacctcatgtcag
ggccctgaaggtgaacttgggaagtggtcactggccctttatttttgcct
atttctaaagcaagaaggttgggaaatcttcaaggtttcaaagcccctga
tgggtagcagggacaacagttggtggaagagggtggggttctagaggaag
gtaaacttcctgacttttttacagtctagaaatctccatgatcccaagtg
ggtcctagaggacaagacccaaaggtgaggaagaaaagaaaaaaaaggaa
aggatgggggaggaggggaaggat
gtaaaaaaacaaaaacaaaaacaaaaaacaaaccaagacgcaaggggagt
ggaaaaccagtcctaaaggttggatactatataactctaatataaacaaa
tgttttcgggggagggcggagggagagaaaaaaagattagcgatcgccag
ggcctaagagtgcaagttacaaaagcctcccaggagggcacagaatgttc
tgtttctccactggcatcgggtacatgaactgacccagacgataacattg
tgtaggatttaacgtttgcaaacgaagatgcgcataacccgggaaacctg
agcaagcctggcgatcagatctaagtccacgtctcagttggaaactatac
tttgttgtgttttgcagagtggcagcactgtgagaagtgaactaggtacg
aactacaactacagtgagaagttggccagccacagcgcacgcccctagga
gcgcagggattccaccgatccctggtgggaccgcaacacccggcgctaga
ctctcaccggcagccgctcccttgagggcgtcgggggtgggcccagggga
ctggcggggcgggatggggctagcgtcggaagtgacgtcagcgggcgggg
catgcacctgagcacctgggcggacacggttgagccaggctgcttgcgat
acgcacgcgatggagggcgagggccggggccggtgggctctggggctgct
gcgcaccttcgacgccggcgaattcgcaggctgggagaaggtgggctcgg
gcggcttcgggcaggtgtacaaggtgcgccatgtgcactggaggacgtgg
ctcgcgatcaagtgctcgcccagtctgcacgtcgacgacaggtcagctcc
gggcggggccgggtgggatggggggctgcgtggctacgtgaagcgccgcg
gaatgaagtttgcgccatttaggccaccggtccctcgcatctccagtgct
tctgggattcgtgagctggcggggagcgatggcctgagtccctgtgaggt
gcgtcgggctcttccgggatccactaatgctgtggtccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97864191_97864619
seq2: B6Ng01-143O02.b_45_473

seq1  GAATTCTCTTCTAGTGCTGACAATGGGCACAATGACTGCAGGGGAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTAGTGCTGACAATGGGCACAATGACTGCAGGGGAGAAGA  50

seq1  GACTGGAGACGGATTTGTGACCTAGATGGGTCAGGGAAGGGCAGGACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGACGGATTTGTGACCTAGATGGGTCAGGGAAGGGCAGGACTAC  100

seq1  ACCTTGACCAGACCTGCTTAAATTTGCCTTCTATTTAAACCTAGACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACCAGACCTGCTTAAATTTGCCTTCTATTTAAACCTAGACCTCA  150

seq1  TGTCAGGGCCCTGAAGGTGAACTTGGGAAGTGGTCACTGGCCCTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGCCCTGAAGGTGAACTTGGGAAGTGGTCACTGGCCCTTTATTT  200

seq1  TTGCCTATTTCTAAAGCAAGAAGGTTGGGAAATCTTCAAGGTTTCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTTCTAAAGCAAGAAGGTTGGGAAATCTTCAAGGTTTCAAAGC  250

seq1  CCCTGATGGGTAGCAGGGACAACAGTTGGTGGAAGAGGGTGGGGTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGGGTAGCAGGGACAACAGTTGGTGGAAGAGGGTGGGGTTCTAG  300

seq1  AGGAAGGTAAACTTCCTGACTTTTTTACAGTCTAGAAATCTCCATGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTAAACTTCCTGACTTTTTTACAGTCTAGAAATCTCCATGATCC  350

seq1  CAAGTGGGTCCTAGAGGACAAGACCCAAAGGTGAGGAAGAAAAGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGTCCTAGAGGACAAGACCCAAAGGTGAGGAAGAAAAGAAAAAA  400

seq1  AAGGAAAGGATGGGGGAGGAGGGGAAGGA  429
      |||||||||||||||||||||||||||||
seq2  AAGGAAAGGATGGGGGAGGAGGGGAAGGA  429

seq1: chr16_97984938_97985975
seq2: B6Ng01-143O02.g_76_1114 (reverse)

seq1  CGGACCGCAGCATTTGGTGGGTCCCGGACGAGCCCGACGCACCTCACAGG  50
      |||||| ||||| || |||| ||||||| |||||||||||||||||||||
seq2  CGGACCACAGCA-TTAGTGGATCCCGGAAGAGCCCGACGCACCTCACAGG  49

seq1  G-CTCAGGGCCATCGCTCCCCGCCAGCTC-CGAATCCCAGAAGCACTGGA  98
      | |||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  GACTCA-GGCCATCGCTCCCCGCCAGCTCACGAATCCCAGAAGCACTGGA  98

seq1  GCTGCGAGGGACCGGTGGCCTGAGTGGCGCAAACTCTCTTCCGCGGCGCT  148
      | ||||||||||||||||||| | |||||||||||   ||||||||||||
seq2  GATGCGAGGGACCGGTGGCCTAAATGGCGCAAACTTCATTCCGCGGCGCT  148

seq1  TCACGTAG-CACGCAG-CCCCCATCCCACCCGGCCCCGCCCGGGAGCTGA  196
      |||||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  TCACGTAGCCACGCAGCCCCCCATCCCACCCGGCCCCGCCC-GGAGCTGA  197

seq1  CCTGTCGTCGACGTGCAGACTGGGCGAGCACTTGATCGCGAGCCACGTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTGTCGTCGACGTGCAGACTGGGCGAGCACTTGATCGCGAGCCACGTCC  247

seq1  TCCAGTGCACATGGCGCACCTTGTACACCTGCCCGAAGCCGCCCGAGCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCACATGGCGCACCTTGTACACCTGCCCGAAGCCGCCCGAGCCC  297

seq1  ACCTTCTCCCAGCCTGCGAATTCGCCGGCGTCGAAGGTGCGCAGCAGCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCCCAGCCTGCGAATTCGCCGGCGTCGAAGGTGCGCAGCAGCCC  347

seq1  CAGAGCCCACCGGCCCCGGCCCTCGCCCTCCATCGCGTGCGTATCGCAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCACCGGCCCCGGCCCTCGCCCTCCATCGCGTGCGTATCGCAAG  397

seq1  CAGCCTGGCTCAACCGTGTCCGCCCAGGTGCTCAGGTGCATGCCCCGCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCTCAACCGTGTCCGCCCAGGTGCTCAGGTGCATGCCCCGCCC  447

seq1  GCTGACGTCACTTCCGACGCTAGCCCCATCCCGCCCCGCCAGTCCCCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACGTCACTTCCGACGCTAGCCCCATCCCGCCCCGCCAGTCCCCTGG  497

seq1  GCCCACCCCCGACGCCCTCAAGGGAGCGGCTGCCGGTGAGAGTCTAGCGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCCCGACGCCCTCAAGGGAGCGGCTGCCGGTGAGAGTCTAGCGC  547

seq1  CGGGTGTTGCGGTCCCACCAGGGATCGGTGGAATCCCTGCGCTCCTAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTTGCGGTCCCACCAGGGATCGGTGGAATCCCTGCGCTCCTAGGG  597

seq1  GCGTGCGCTGTGGCTGGCCAACTTCTCACTGTAGTTGTAGTTCGTACCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCTGTGGCTGGCCAACTTCTCACTGTAGTTGTAGTTCGTACCTA  647

seq1  GTTCACTTCTCACAGTGCTGCCACTCTGCAAAACACAACAAAGTATAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTCTCACAGTGCTGCCACTCTGCAAAACACAACAAAGTATAGTT  697

seq1  TCCAACTGAGACGTGGACTTAGATCTGATCGCCAGGCTTGCTCAGGTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGAGACGTGGACTTAGATCTGATCGCCAGGCTTGCTCAGGTTTC  747

seq1  CCGGGTTATGCGCATCTTCGTTTGCAAACGTTAAATCCTACACAATGTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTTATGCGCATCTTCGTTTGCAAACGTTAAATCCTACACAATGTTA  797

seq1  TCGTCTGGGTCAGTTCATGTACCCGATGCCAGTGGAGAAACAGAACATTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGGGTCAGTTCATGTACCCGATGCCAGTGGAGAAACAGAACATTC  847

seq1  TGTGCCCTCCTGGGAGGCTTTTGTAACTTGCACTCTTAGGCCCTGGCGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTCCTGGGAGGCTTTTGTAACTTGCACTCTTAGGCCCTGGCGAT  897

seq1  CGCTAATCTTTTTTTCTCTCCCTCCGCCCTCCCCCGAAAACATTTGTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAATCTTTTTTTCTCTCCCTCCGCCCTCCCCCGAAAACATTTGTTTA  947

seq1  TATTAGAGTTATATAGTATCCAACCTTTAGGACTGGTTTTCCACTCCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGTTATATAGTATCCAACCTTTAGGACTGGTTTTCCACTCCCCT  997

seq1  TGCGTCTTGGTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTAC  1038
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTTGGTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTAC  1039