BAC Information

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BAC

Clone NameB6Ng01-143P06
Chromosome19 (Build37)16 (Build37)
Map Location 49,054,761 - 49,055,28083,216,375 - 83,217,485
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm969, LOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143P06.bB6Ng01-143P06.g
ACCDH941754DH941755
length9871,107
definitionDH941754|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P06, 5' end.DH941755|Mus musculus domesticus DNA, BAC clone: B6Ng01-143P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,054,761 - 49,055,280)(83,216,375 - 83,217,485)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttgaatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtgttttttgtcttt
gagtttgtttatataatggattacattgatggattttcttatattaaacc
atccctgcattcctggaataaaacctacttggtcagggtggatgattgct
ttaatgtgttcttggattcggttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactatacctgtctg
gtcctgggctttttttggctgggagactataaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgactcaactt
tgttacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttcagtataaccttttgtataaggatctgatggtgttttgtatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatgta
tctttttgattttctcaaagaaccaactcctcgtttggttaattctttga
agagttcttcttgtttccacttggttgttttcacccctgagtttgattat
ttcctgccatctactcctcttgggtgaattgcttccttttttctagagct
tttgatgtgtgtcagctgctagtatgtactctctcagttctctggaggca
ctcagagctatgagtttccctcttagaatgctttcat
gaattcatatgatggaacaaaagaaaacaaaatctagtgtttaaattttg
cctagcgactgtcatttttcctccctagcttgctaattggattgcatctc
tgaattttgtcctcatgcagattgcataaaaataattgaaaattatttag
aaccagatactcattattcccagaaaagcaaccagttctcttcctgggac
actctgtgaatcctttagattatgacttccaacataaagtaacctatatg
gaacgtaactggtgacccaaatgttcttaaagtgctgagacctgggctta
gatcttttatgttttaaaatgtactaaatttaagaggagtgcacactttt
aggaatatgttataatactttgaaatgatttctttagatgtcaagcaacg
tgtggagattcttgctaagtagtggattctttcctaggtagaattatttt
atcctttatttctttttccttcatcctctccccttcttctctctaacttc
catttttctatttttatttggacaatgaactttgctaatcttctacattc
tctccttcctaatggcaaaatatccatgctatgtaaaataaattctcaga
ttatgaagaaatcaactaatagtaaataaaatgcttatattctagaagaa
actgagagggtttggtctatgacatggggtgatgatacagcttaagagct
tgtcttattcatacatatgcttgtataatttaaagtgtgggaaatgacaa
acattttctagtagagaggtgaacatacacctgacagaagtaagaatcag
tatttcagatgcagattataattaggaacaagataggaataaaataaaat
agtagagttgacaaagaaaggttgaattttaagctggtctccgagatgtt
tctttcttttgagtatatactgtttagtatcttatgcctgaatgatatca
tcagcatatctaactattttgacttactatactgggtggatctaggaaaa
gctaagtcgctttaaagcatggggctttcttcctaaattatgaagaataa
aaagtcaaatggaagaaagcaaaaggcaatctgctactctgctggtccaa
aagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49054761_49055280
seq2: B6Ng01-143P06.b_47_566 (reverse)

seq1  AACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTTATAGTCTCCC  50

seq1  AGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGA  100
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  AGCCAAAAAAAGCCCAGGACCAGACAGGTATAGTGCAGAGTTCTATCAGA  100

seq1  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA  150

seq1  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCT  200

seq1  GATACCTAAACCACAGAAAGATTCAACAAAGATAGAGAACTTCAGACCAA  250
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  GATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAA  250

seq1  TTTCTCTTATGAATATTGATGCAAAAATCCTCAATAAAATTCTTGCTAAC  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTTGCTAAC  300

seq1  CGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGTTT  350
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CGAATCCAAGAACACATTAAAGCAATCATCCACCCTGACCAAGTAGGTTT  350

seq1  TATTCCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA  400
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATTCCAGGAATGCAGGGATGGTTTAATATAAGAAAATCCATCAATGTAA  400

seq1  TCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTA  450
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCGTTA  450

seq1  GATGCAGAAAAAGCATTTGACAAGATTCAACACCCATTCATGATAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAAAAGCATTTGACAAGATTCAACACCCATTCATGATAAAAGT  500

seq1  TTTGGAAAGATCAGGAATTC  520
      ||||||||||||||||||||
seq2  TTTGGAAAGATCAGGAATTC  520

seq1: chr16_83216375_83217485
seq2: B6Ng01-143P06.g_68_1174 (reverse)

seq1  TGAGCTCTTTGAACCAGCAAGAGTAGGCAGAATGCC-TCTGCTCTCTT-C  48
      |||||| |||| |||||| |||||| ||||| |||| | |||| |||| |
seq2  TGAGCT-TTTGGACCAGC-AGAGTA-GCAGATTGCCTTTTGCTTTCTTCC  47

seq1  ATTTGAC-TTCTATTCTTCAATATCTA-GTAGAAAGCCCCATGCTTTAAA  96
      ||||||| || |||||||||  || || | ||||||||||||||||||||
seq2  ATTTGACTTTTTATTCTTCATAATTTAGGAAGAAAGCCCCATGCTTTAAA  97

seq1  GCGACTTAGCTTTTCCTAGATCCACTCAGTATAGTAAGTCAAAATAGTTT  146
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GCGACTTAGCTTTTCCTAGATCCACCCAGTATAGTAAGTCAAAATAG-TT  146

seq1  AGATATGCTGATGAATATCATTCAGGCATAAGATAACTAAACAGTATATA  196
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AGATATGCTGATG-ATATCATTCAGGCATAAGAT-ACTAAACAGTATATA  194

seq1  CTCAAAAAGAAAGAAAACATCTCGGAGACCAGCTTAAAATTCAACCTTTC  246
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTC-AAAAGAAAG-AAACATCTCGGAGACCAGCTTAAAATTCAACCTTTC  242

seq1  TTTGTCAACTCTACTATTTTATTTTATTCCTATCTTGTTCCTAATTATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAACTCTACTATTTTATTTTATTCCTATCTTGTTCCTAATTATAA  292

seq1  TCTGCATCTGAAATACTGATTCTTACTTCTGTCAGGTGTATGTTCACCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCTGAAATACTGATTCTTACTTCTGTCAGGTGTATGTTCACCTC  342

seq1  TCTACTAGAAAATGTTTGTCATTTCCCACACTTTAAATTATACAAGCATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAGAAAATGTTTGTCATTTCCCACACTTTAAATTATACAAGCATA  392

seq1  TGTATGAATAAGACAAGCTCTTAAGCTGTATCATCACCCCATGTCATAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAATAAGACAAGCTCTTAAGCTGTATCATCACCCCATGTCATAGA  442

seq1  CCAAACCCTCTCAGTTTCTTCTAGAATATAAGCATTTTATTTACTATTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCTCTCAGTTTCTTCTAGAATATAAGCATTTTATTTACTATTAG  492

seq1  TTGATTTCTTCATAATCTGAGAATTTATTTTACATAGCATGGATATTTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTTCATAATCTGAGAATTTATTTTACATAGCATGGATATTTTG  542

seq1  CCATTAGGAAGGAGAGAATGTAGAAGATTAGCAAAGTTCATTGTCCAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGGAAGGAGAGAATGTAGAAGATTAGCAAAGTTCATTGTCCAAAT  592

seq1  AAAAATAGAAAAATGGAAGTTAGAGAGAAGAAGGGGAGAGGATGAAGGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAAAAATGGAAGTTAGAGAGAAGAAGGGGAGAGGATGAAGGAA  642

seq1  AAAGAAATAAAGGATAAAATAATTCTACCTAGGAAAGAATCCACTACTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAAGGATAAAATAATTCTACCTAGGAAAGAATCCACTACTTA  692

seq1  GCAAGAATCTCCACACGTTGCTTGACATCTAAAGAAATCATTTCAAAGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATCTCCACACGTTGCTTGACATCTAAAGAAATCATTTCAAAGTA  742

seq1  TTATAACATATTCCTAAAAGTGTGCACTCCTCTTAAATTTAGTACATTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACATATTCCTAAAAGTGTGCACTCCTCTTAAATTTAGTACATTTT  792

seq1  AAAACATAAAAGATCTAAGCCCAGGTCTCAGCACTTTAAGAACATTTGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAAAGATCTAAGCCCAGGTCTCAGCACTTTAAGAACATTTGGG  842

seq1  TCACCAGTTACGTTCCATATAGGTTACTTTATGTTGGAAGTCATAATCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTTACGTTCCATATAGGTTACTTTATGTTGGAAGTCATAATCTA  892

seq1  AAGGATTCACAGAGTGTCCCAGGAAGAGAACTGGTTGCTTTTCTGGGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCACAGAGTGTCCCAGGAAGAGAACTGGTTGCTTTTCTGGGAAT  942

seq1  AATGAGTATCTGGTTCTAAATAATTTTCAATTATTTTTATGCAATCTGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTATCTGGTTCTAAATAATTTTCAATTATTTTTATGCAATCTGCA  992

seq1  TGAGGACAAAATTCAGAGATGCAATCCAATTAGCAAGCTAGGGAGGAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAAAATTCAGAGATGCAATCCAATTAGCAAGCTAGGGAGGAAAA  1042

seq1  ATGACAGTCGCTAGGCAAAATTTAAACACTAGATTTTGTTTTCTTTTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTCGCTAGGCAAAATTTAAACACTAGATTTTGTTTTCTTTTGTT  1092

seq1  CCATCATATGAATTC  1111
      |||||||||||||||
seq2  CCATCATATGAATTC  1107