BAC Information

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BAC

Clone NameB6Ng01-147F03
Chromosome16 (Build37)
Map Location 14,189,078 - 14,342,625
singlet/doubletdoublet
Overlap geneNde1, Myh11, 0610037P05Rik
Upstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik
Downstream geneAbcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147F03.bB6Ng01-147F03.g
ACCDH944235DH944236
length6191,135
definitionDH944235|Mus musculus domesticus DNA, BAC clone: B6Ng01-147F03, 5' end.DH944236|Mus musculus domesticus DNA, BAC clone: B6Ng01-147F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,189,078 - 14,189,696)(14,342,062 - 14,342,625)
sequence
gaattctttgtatttgcactttcatttttagaaataaaaggccatttacc
atcagcccagcctgtcccggaggcagaaagagaacacacacacacacaca
cacacacacacacacacacacagagggtctgcttggcttgcatgcacagg
tctgtaggtctgtggatatttaagcttatttactccaagttcaaggcctt
gtttgaacctctcttaccatctaatgaggtaaacaaagggaacaattcca
aaagttattattatcgttagtatttgctgagggtagttcccgctgtgttt
ttgttgttgtttgtttgatacagggtcttgctatgtatagcctaggctgg
tctggaatgtacagtagttctccttcggtcctttgagtgctgggattata
ggtttgtaccaccatgtctatctcatatttcagtaggtagagttaatttt
ctgggactcttctggatattttagatgggtagctttcagtacttgttcca
ctggggttccactggggccctcttagaatttttggaaccacagtttagat
tgttttctctgttgtggtcctcatgctctatttgggtttgttgtttgttt
tgttgtttggtgatggtag
gaattcagtaggaattcagtgagaaggttatctgttcagtaacattcaaa
tttacttctagtagaaacagtgaaactcattaggctttacaaagaacgga
gccagaatagctcagggctagtctgcagagtgatttcttaggacagtaac
cagtctcacccaaacaagggaatacacaatggcctagctaataggtgggt
ttaccatgtaagagttagggaatcccactgagacagggatcttctctaca
gccaggtatagcaggctacattgcatattagaagcaaattggtgaattct
tctgacaaatgggagattcaccatagatacttaaaagaacagccaagtta
cactcatacaagaatttatcaaggccttggaaataggaggtttgtggtat
tgcattattcatgagaaggtctgctagagcagaatcccctggtgctagct
ttcacaaggctcaaaggagtagcacaaattgtgactagggtgtgaaatcc
ttagctgttattaactaaccctaggcagggcagttttatctttactgtaa
acatttacctggttcctgtaagtccctttgaagtcattcctttgttttgt
gtcaggtaacttcaatgtactttgcctgctgtgacatcctacccctttgt
tttctgtattctataagaatacacttctataagaatacacactaatgtca
ctttgtgacaatacattcagattctacacagcctcttgtgttgatttgtc
tgttattcgctgactccttgtccacctgcaactagagacctgttctacgc
agacaggggaccaaaaagggtctgtgacagttcacttttctagacaacat
agcagtgaggtaaataatcaagattcttttcagcttggtctgggcttaac
tctgactgggcaagttgttcaatttctctgttgctctggtttttctagta
caaagcagaaatgataacaataattgctactttgagttatctaaacatta
attgttatattccagggaaatgctacattttttgtgtggacttgtagatg
gtagtactggaaactacagctactgagtggagtaaattcctggacggggt
tacatcttccgagctgagagagatatatgtgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_14189078_14189696
seq2: B6Ng01-147F03.b_43_661

seq1  GAATTCTTTGTATTTGCACTTTCATTTTTAGAAATAAAAGGCCATTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATTTGCACTTTCATTTTTAGAAATAAAAGGCCATTTACC  50

seq1  ATCAGCCCAGCCTGTCCCGGAGGCAGAAAGAGAACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCCAGCCTGTCCCGGAGGCAGAAAGAGAACACACACACACACACA  100

seq1  CACACACACACACACACACACAGAGGGTCTGCTTGGCTTGCATGCACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAGAGGGTCTGCTTGGCTTGCATGCACAGG  150

seq1  TCTGTAGGTCTGTGGATATTTAAGCTTATTTACTCCAAGTTCAAGGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTCTGTGGATATTTAAGCTTATTTACTCCAAGTTCAAGGCCTT  200

seq1  GTTTGAACCTCTCTTACCATCTAATGAGGTAAACAAAGGGAACAATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACCTCTCTTACCATCTAATGAGGTAAACAAAGGGAACAATTCCA  250

seq1  AAAGTTATTATTATCGTTAGTATTTGCTGAGGGTAGTTCCCGCTGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTATTATCGTTAGTATTTGCTGAGGGTAGTTCCCGCTGTGTTT  300

seq1  TTGTTGTTGTTTGTTTGATACAGGGTCTTGCTATGTATAGCCTAGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTGTTTGATACAGGGTCTTGCTATGTATAGCCTAGGCTGG  350

seq1  TCTGGAATGTACAGTAGTTCTCCTTCGGTCCTTTGAGTGCTGGGATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGTACAGTAGTTCTCCTTCGGTCCTTTGAGTGCTGGGATTATA  400

seq1  GGTTTGTACCACCATGTCTATCTCATATTTCAGTAGGTAGAGTTAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTACCACCATGTCTATCTCATATTTCAGTAGGTAGAGTTAATTTT  450

seq1  CTGGGACTCTTCTGGATATTTTAGATGGGTAGCTTTCAGTACTTGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTCTTCTGGATATTTTAGATGGGTAGCTTTCAGTACTTGTTCCA  500

seq1  CTGGGGTTCCACTGGGGCCCTCTTAGAATTTTTGGAACCACAGTTTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTCCACTGGGGCCCTCTTAGAATTTTTGGAACCACAGTTTAGAT  550

seq1  TGTTTTCTCTGTTGTGGTCCTCATGCTCTATTTGGGTTTGTTGTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTGTTGTGGTCCTCATGCTCTATTTGGGTTTGTTGTTTGTTT  600

seq1  TGTTGTTTGGTGATGGTAG  619
      |||||||||||||||||||
seq2  TGTTGTTTGGTGATGGTAG  619

seq1: chr16_14342062_14342625
seq2: B6Ng01-147F03.g_642_1205 (reverse)

seq1  GATG-ACATAT-TCTCTCTCAGCTCAGAAGGTAGTAACACCGTCCAGGAA  48
      |||| |||||| ||||||||||||| |||| | ||||| |||||||||||
seq2  GATGCACATATATCTCTCTCAGCTCGGAAGAT-GTAACCCCGTCCAGGAA  49

seq1  TTTATACTCCACTCAGTGACTGTAGTATCCAGTACTTACCTACTACTATG  98
      ||  |||||||||||||  ||||||| |||||||| ||||  |||| |  
seq2  TT--TACTCCACTCAGTAGCTGTAGTTTCCAGTAC-TACCATCTACAAGT  96

seq1  TCACAC-ACAAATGTAGCATTTCCCTTGAATATATACATTTAATGTTTAT  147
       ||||| | ||||||||||||||||| ||||||| ||| |||||||||| 
seq2  CCACACAAAAAATGTAGCATTTCCCTGGAATATA-ACAATTAATGTTTA-  144

seq1  GATAACTCAATGTAGCAATTATTGTTATCATTTCTGCTTTGTACTTAGAA  197
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GATAACTCAAAGTAGCAATTATTGTTATCATTTCTGCTTTGTAC-TAGAA  193

seq1  AAACTAGAGC-ACAGAGAAATTGAACAACTTGCCCAGTCAGAGTTAAGCC  246
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGCAACAGAGAAATTGAACAACTTGCCCAGTCAGAGTTAAGCC  243

seq1  CAGACC-AGCTGAAAAGAATCTTGATTATTTACCTCACTGCTATGTTGTC  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAGCTGAAAAGAATCTTGATTATTTACCTCACTGCTATGTTGTC  293

seq1  TAG-AAAGTGAACTGTCACAGACCCTTTTTGGT-CCCTGTCTGCGTAGAA  343
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGAAAAGTGAACTGTCACAGACCCTTTTTGGTCCCCTGTCTGCGTAGAA  343

seq1  CAGGTCTCTAGTTGCAGGTGGACAAGGAGTCAGCGAATAACAGACAAATC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCTAGTTGCAGGTGGACAAGGAGTCAGCGAATAACAGACAAATC  393

seq1  AACACAAGAGGCTGTGTAGAATCTGAATGTATTGTCACAAAGTGACATTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGAGGCTGTGTAGAATCTGAATGTATTGTCACAAAGTGACATTA  443

seq1  GTGTGTATTCTTATAGAAGTGTATTCTTATAGAATACAGAAAACAAAGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTCTTATAGAAGTGTATTCTTATAGAATACAGAAAACAAAGGG  493

seq1  GTAGGATGTCACAGCAGGCAAAGTACATTGAAGTTACCTGACACAAAACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGTCACAGCAGGCAAAGTACATTGAAGTTACCTGACACAAAACA  543

seq1  AAGGAATGACTTCAAAGGGAC  564
      |||||||||||||||||||||
seq2  AAGGAATGACTTCAAAGGGAC  564