BAC Information

Click to search

BAC

Clone NameB6Ng01-148E02
Chromosome16 (Build37)
Map Location 49,646,950 - 49,648,131
singlet/doubletsinglet
Overlap genenone
Upstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903
Downstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148E02.bB6Ng01-148E02.g
ACCDH944917DH944918
length1,1901,159
definitionDH944917|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E02, 5' end.DH944918|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttccaaaagactgtacttgtattaaagatatatcctggccat
gttccttggagtaccctcattgaaaatgggatacaaacataatctttcaa
tttcccggtccattttctttttaccctaacaatcaccagatctaaaaggt
caatgcttattatacccatttcaatctcagagaaggcaacaagatttaat
atttaaatatgaagcatttaatctctttatgtcctgtatgctttgcatat
attaggtgcctaactatagaaaactgtggttaccttcaaggcaagcattg
tctaggatgaatacatgtataaaagcagagcctgtctgcagacaacacca
gagagttggagtagctatctttacaccgtgacatttcagtctataaggct
tcctggcaggctcctttttatcctgagttttctaataagaagtcagactt
ttattcttatggcttcttattttagatgtgcatggcttattttaagcagc
ctcatcaaacagagaaaacagaaaaatatctttatagatccgaggcttat
aatagaaataacatcaacatttaccagctgcaattatatatacacatgtg
tgtgtttattgagacttgctcctcaaagttttactggtgggctcatggtt
gtttgtttcttgtacaaaaaggatattgagaaaaataaacgaagcatctg
aggtgaaatatcgtgttgctatcagcatgctgtataacataggaatgggg
ggaagcttctattcttgacctagaacggataaatttaaatataaaagccc
aaaagaaattattctattcatcatgctggctatcgggttagttgatcgca
ctgcttctgagataagagctcctaaaggtcacttagaatacacattttta
gcagacatatgaaaggcagacaaacactgctttgtttgttcacaagagtg
agaagttatatgtgaaaaccacaggggaagaaacaggagtcttggatctc
acctatattaattaaagtgcctgttactctaatataagcaagactttatt
ttattctggatttccctaaaataaaaaaaaaaaacatctaatttatgtgg
aacatcaaaaaagcccgttcttccaagcaaggccataaaataaagacctc
tccagccactaagcctatgccaattggcacctgaactgac
gaattcaaatagattcacacctaataccctaaataaaattcaactccaaa
tggatctaagacttcaacataaaaccagatacactgactctgatagaaaa
gaaagtggactatagctgtaaacccatcagctcaggagaagacttcctga
acagaacactgttagtacatgtactaagatcaacagttaaaaaaaggaac
ctcaggacacctagaaccttccgaactgcaaatgacattgccattcaaac
aaaggtgagcctacagaatggaagacttttatcaactacattcaataaag
agctactatccaaaatacaccaagaacaagaacacaaaaacaaaccaaaa
gaacaacaacaacaataaccacaactactggatgtcaagaaaacaaataa
cctgactttaaaacaggatctaaacagaattctcaaaaaaggaacctcaa
gtggcctagaaacacttaaagaaatgttcagcatccttagccatcaggga
catgcaagtcaaaactattttgcaattccatcttacacctgtcagaatgg
ctaagatcaataaaacaagagatagctcatgctggcaagtttgtaaagta
tggggaacactcatccattgttgctggtaatgcaaagttgtgcagccatt
atgaaaatcagtatggtgatccctcaggaaggtgggaatcaatgtatttt
aagacccagctataccactcttggccatataccaaaagcatgcttcatct
tatcacagagacagtacacaataatgtccattgctgctctattcatgata
gccagaaactgggaagaacctagatttcactcaacagaagaataactaat
atttgcacattgtaatattgctcagccatcaaaaaagaagacattataaa
atttgcaggttaatagatggacctagggggggaaattcattctgaatgag
gtagtctggacagaaagacaaatatggttaatattcagtcatctgtggat
attagctgtaagtcatgataacatctatattcatagaatgacagaaggta
ggtaaagaataaaagaactagggaagattaatctcccttagagataatat
agttatggatggattgtgggctctcacgtccagaggtattagaatgcagg
gaagaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_49646950_49648131
seq2: B6Ng01-148E02.b_48_1237

seq1  GAATTCACTTCCAAAAGACTGTACTTGTATTAAAGATATATCCTGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCAAAAGACTGTACTTGTATTAAAGATATATCCTGGCCAT  50

seq1  GTTCCTTGGAGTACCCTCATTGAAAATGGGATACAAACATAATCTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGAGTACCCTCATTGAAAATGGGATACAAACATAATCTTTCAA  100

seq1  TTTCCCGGTCCATTTTCTTTTTACCCTAACAATCACCAGATCTAAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGGTCCATTTTCTTTTTACCCTAACAATCACCAGATCTAAAAGGT  150

seq1  CAATGCTTATTATACCCATTTCAATCTCAGAGAAGGCAACAAGATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTATTATACCCATTTCAATCTCAGAGAAGGCAACAAGATTTAAT  200

seq1  ATTTAAATATGAAGCATTTAATCTCTTTATGTCCTGTATGCTTTGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATGAAGCATTTAATCTCTTTATGTCCTGTATGCTTTGCATAT  250

seq1  ATTAGGTGCCTAACTATAGAAAACTGTGGTTACCTTCAAGGCAAGCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTGCCTAACTATAGAAAACTGTGGTTACCTTCAAGGCAAGCATTG  300

seq1  TCTAGGATGAATACATGTATAAAAGCAGAGCCTGTCTGCAGACAACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATGAATACATGTATAAAAGCAGAGCCTGTCTGCAGACAACACCA  350

seq1  GAGAGTTGGAGTAGCTATCTTTACACCGTGACATTTCAGTCTATAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGGAGTAGCTATCTTTACACCGTGACATTTCAGTCTATAAGGCT  400

seq1  TCCTGGCAGGCTCCTTTTTATCCTGAGTTTTCTAATAAGAAGTCAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGGCTCCTTTTTATCCTGAGTTTTCTAATAAGAAGTCAGACTT  450

seq1  TTATTCTTATGGCTTCTTATTTTAGATGTGCATGGCTTATTTTAAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTATGGCTTCTTATTTTAGATGTGCATGGCTTATTTTAAGCAGC  500

seq1  CTCATCAAACAGAGAAAACAGAAAAATATCTTTATAGATCCGAGGCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAAACAGAGAAAACAGAAAAATATCTTTATAGATCCGAGGCTTAT  550

seq1  AATAGAAATAACATCAACATTTACCAGCTGCAATTATATATACACATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATAACATCAACATTTACCAGCTGCAATTATATATACACATGTG  600

seq1  TGTGTTTATTGAGACTTGCTCCTCAAAGTTTTACTGGTGGGCTCATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATTGAGACTTGCTCCTCAAAGTTTTACTGGTGGGCTCATGGTT  650

seq1  GTTTGTTTCTTGTACAAAAAGGATATTGAGAAAAATAAACGAAGCATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTCTTGTACAAAAAGGATATTGAGAAAAATAAACGAAGCATCTG  700

seq1  AGGTGAAATATCGTGTTGCTATCAGCATGCTGTATAACATAGGAATGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAATATCGTGTTGCTATCAGCATGCTGTATAACATAGGAATGGGG  750

seq1  GGAAGCTTCTATTCTTGACCTAGAACGGATAAATTTAAATATAAAAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTCTATTCTTGACCTAGAACGGATAAATTTAAATATAAAAGCCC  800

seq1  AAAAGAAATTATTCTATTCATCATGCTGGCTATCGGGTTAGTTGATCGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTATTCTATTCATCATGCTGGCTATCGGGTTAGTTGATCGCA  850

seq1  CTGCTTCTGAGATAAGAGCTCCTAAAGGTCACTTAGAATACACATTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGAGATAAGAGCTCCTAAAGGTCACTTAGAATACACATTTTTA  900

seq1  GCAGACATATG-AAGGCAGACAAACACTGCTGTGTTTGTTCACAAGAGTG  949
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GCAGACATATGAAAGGCAGACAAACACTGCTTTGTTTGTTCACAAGAGTG  950

seq1  AGAAGTTATATGTGAAAA-CACAGGGGAAGAAACAGGAGTCTTGGATCTC  998
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAGTTATATGTGAAAACCACAGGGGAAGAAACAGGAGTCTTGGATCTC  1000

seq1  ACCTATATTAATTAAAGTGCCTGTTACTCTAATAT-AGC-AGACTATA-T  1045
      ||||||||||||||||||||||||||||||||||| ||| ||||| || |
seq2  ACCTATATTAATTAAAGTGCCTGTTACTCTAATATAAGCAAGACTTTATT  1050

seq1  TTATTCTGGGATTTTCCTAAAAT-AAAAAAAAATACATCTAATCTATGTA  1094
      ||||||| |||||| |||||||| ||||||||| ||||||||| ||||| 
seq2  TTATTCT-GGATTTCCCTAAAATAAAAAAAAAAAACATCTAATTTATGTG  1099

seq1  GAACATCTAGAAAGTCTGTTCTTTCAAAGCAAG--CATAAAATAGAGACC  1142
      ||||||| | |||| | |||| ||| |||||||  ||||||||| |||||
seq2  GAACATCAAAAAAGCCCGTTC-TTCCAAGCAAGGCCATAAAATAAAGACC  1148

seq1  TCTCCAGCCACT-AGCTCATG-CAATTGGCACTAGAACTGAC  1182
      |||||||||||| |||  ||| ||||||||||  ||||||||
seq2  TCTCCAGCCACTAAGCCTATGCCAATTGGCACCTGAACTGAC  1190