BAC Information

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BAC

Clone NameB6Ng01-149P12
Chromosome16 (Build37)
Map Location 94,951,745 - 95,111,381
singlet/doubletdoublet
Overlap geneKcnj6
Upstream geneCldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a
Downstream geneLOC666201, Kcnj15, Erg, Ets2, LOC625548, LOC100040997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149P12.bB6Ng01-149P12.g
ACCDH946166DH946167
length1,031675
definitionDH946166|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P12, 5' end.DH946167|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,951,745 - 94,952,771)(95,110,707 - 95,111,381)
sequence
gaattccttgtgaaaaatctaaggccttagcgtcagcaaactgccttctg
agaatctgggcagacgcttttggggaggatgcaggtacctaagcacaaat
ctctgctgccacaggggcctggcggttgagcttcattttacctagagctt
gggacaatcaagtcatagaagactagaatcaggctggagagatggctcag
cagttaagagaaccgactgctcttccagaggtcccaagttcaattcccgg
caaccacatagtggctcacaaccatctgtaatgggatctgatgcctcttc
tggtgtgtctgaagagagcaatggtgtactcacatacataaaataagtat
actgtagctgtacagatggttgtgagccttcatgtggttgttgggaattg
aattttaggacctctgctggcgctggttgtccccgctcgctccaatcaac
tccactcactcagtccctgcagtccaaagatttatttattattatacata
agtacactgtagttgacttcagatgcaccagaagagggagtcagatctca
ttacggaaggttgtgagtcaccatgtggttgctgggatttgaactcagga
ccttcggaagagcagtcagtgtttcttacccactgagccatcttgccagc
ccataaataaaatcttaaaaaaaaaaaaaaaggaaaactagaataatcga
gaataatgaagcctttaggagtagctacagggaagatcagctctgagcag
aacactgaatggagagactgaacagtttatcagcagagaatggctgcctg
agaaccaagaggaagtgtgagtcctgaccggtcttgatggataccagtcg
cttgatggagtggcggcggcttgtgaaggggtggaattctggggaccaga
gcaaactggttgggtggcaataaactggaggttacaggaagaaacaaaat
gagctcttcttcctaccacagaaacagagaaacgccctcatgccaggacc
taatgtgacattcggcaagctgcagacgatc
gaattccaaggagttaagatctagtgatcagaggcaaatagccatcttaa
gctaggggtgggggcgttactggagaaatggctgtgggacaggagcaggg
gctggagagatgactctgtgggtaggagtgtgcactgatcttgcaactga
caaaccaagtttagcctcaagcgttacataggcaggctcactgcaagttc
tgagggacctgaccttgtcctctgtcagccacagtattccatgcataccc
cccacacagacagatacacgaaataagaataatattggaaatctcctttt
aaaagcaaagcttaagagaatgatcgtgccaggatgacgagagagagcaa
ggggaggagccagggtgacacggagaagatgtgacatcgggaacaaagga
cgctgacctagagaagacacttcaaaccgtgattgacaagatcccacccg
gaagactcagggaagactgtggaagagtcagaggatggggaggaacatgg
tgacactgtcttctagacatgacaagcccagtgggctctcggacttgctg
cagctatggccacctgcaggagatggagccaacaagatcatgaatgttct
gtcaggtagcaatacaaaggggaggacaggaaggtgggagagagtggttt
gaggaagagcgagggggtggatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94951745_94952771
seq2: B6Ng01-149P12.b_46_1076

seq1  GAATTCCTTGTGAAAAATCTAAGGCCTTAGCGTCAGCAAACTGCCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTGAAAAATCTAAGGCCTTAGCGTCAGCAAACTGCCTTCTG  50

seq1  AGAATCTGGGCAGACGCTTTTGGGGAGGATGCAGGTACCTAAGCACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGGGCAGACGCTTTTGGGGAGGATGCAGGTACCTAAGCACAAAT  100

seq1  CTCTGCTGCCACAGGGGCCTGGCGGTTGAGCTTCATTTTACCTAGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCCACAGGGGCCTGGCGGTTGAGCTTCATTTTACCTAGAGCTT  150

seq1  GGGACAATCAAGTCATAGAAGACTAGAATCAGGCTGGAGAGATGGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAATCAAGTCATAGAAGACTAGAATCAGGCTGGAGAGATGGCTCAG  200

seq1  CAGTTAAGAGAACCGACTGCTCTTCCAGAGGTCCCAAGTTCAATTCCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAGAACCGACTGCTCTTCCAGAGGTCCCAAGTTCAATTCCCGG  250

seq1  CAACCACATAGTGGCTCACAACCATCTGTAATGGGATCTGATGCCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATAGTGGCTCACAACCATCTGTAATGGGATCTGATGCCTCTTC  300

seq1  TGGTGTGTCTGAAGAGAGCAATGGTGTACTCACATACATAAAATAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCTGAAGAGAGCAATGGTGTACTCACATACATAAAATAAGTAT  350

seq1  ACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTG  400

seq1  AATTTTAGGACCTCTGCTGGCGCTGGTTGTCCCCGCTCGCTCCAATCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGGACCTCTGCTGGCGCTGGTTGTCCCCGCTCGCTCCAATCAAC  450

seq1  TCCACTCACTCAGTCCCTGCAGTCCAAAGATTTATTTATTATTATACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACTCAGTCCCTGCAGTCCAAAGATTTATTTATTATTATACATA  500

seq1  AGTACACTGTAGTTGACTTCAGATGCACCAGAAGAGGGAGTCAGATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGTAGTTGACTTCAGATGCACCAGAAGAGGGAGTCAGATCTCA  550

seq1  TTACGGAAGGTTGTGAGTCACCATGTGGTTGCTGGGATTTGAACTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGAAGGTTGTGAGTCACCATGTGGTTGCTGGGATTTGAACTCAGGA  600

seq1  CCTTCGGAAGAGCAGTCAGTG-TTCTTACCCACTGAGCCATCTTGCCAGC  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTTCGGAAGAGCAGTCAGTGTTTCTTACCCACTGAGCCATCTTGCCAGC  650

seq1  CCATAAAT-AAATCTT-AAAAAAAAAAAAAAGGAAAACTAGAATAATCGA  697
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  CCATAAATAAAATCTTAAAAAAAAAAAAAAAGGAAAACTAGAATAATCGA  700

seq1  GAATAATGAAGCCTTTAGGAGTAGCTACAGGGAAGATCAGCTCTGAGCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGAAGCCTTTAGGAGTAGCTACAGGGAAGATCAGCTCTGAGCAG  750

seq1  AACACTGAATGGAGAGACTGAACAGTTTATCAGCAGAGAATGGCTGCCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAATGGAGAGACTGAACAGTTTATCAGCAGAGAATGGCTGCCTG  800

seq1  AGAACCAAGAGGAAGTGTGAGTCCTGACCGGTCTTGATGGATACCAGTCG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAGAGGAAGTGTGAGTCCTGACCGGTCTTGATGGATACCAGTCG  850

seq1  CTTGATGGAGTGGC-GCGGCTTGTGAAGGGGTGGAA-TCTGGGGACCAGA  895
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CTTGATGGAGTGGCGGCGGCTTGTGAAGGGGTGGAATTCTGGGGACCAGA  900

seq1  GCAAACTGG-TGGGTGGC-ATAAACTGGAAGGTTACAGGAGAGAAACAAA  943
      ||||||||| |||||||| ||||||||| ||||||||||| |||||| ||
seq2  GCAAACTGGTTGGGTGGCAATAAACTGG-AGGTTACAGGA-AGAAAC-AA  947

seq1  AATGAGCTCTTCTTCCTA-CACAG-AACAGAGAAACGCCCCCAGTGCCAG  991
      |||||||||||||||||| ||||| ||||||||||||||| || ||||||
seq2  AATGAGCTCTTCTTCCTACCACAGAAACAGAGAAACGCCCTCA-TGCCAG  996

seq1  GA-CTATGTTGACATCCGGCAAAGCCTGCAGACGATC  1027
      || |||   |||||| ||||||   ||||||||||||
seq2  GACCTAATGTGACATTCGGCAA--GCTGCAGACGATC  1031

seq1: chr16_95110707_95111381
seq2: B6Ng01-149P12.g_69_743 (reverse)

seq1  CATATCCACCCCCTCGCTCTTCCTCAAACCACTCTCTCCCACCTTCCTGT  50
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACCCCCTCGCTCTTCCTCAAACCACTCTCTCCCACCTTCCTGT  50

seq1  CCTCCCCTTTGTATTGCTACCTGACAGAACATTCATGATCTTGTTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTTGTATTGCTACCTGACAGAACATTCATGATCTTGTTGGCTC  100

seq1  CATCTCCTGCAGGTGGCCATAGCTGCAGCAAGTCCGAGAGCCCACTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTGCAGGTGGCCATAGCTGCAGCAAGTCCGAGAGCCCACTGGGC  150

seq1  TTGTCATGTCTAGAAGACAGTGTCACCATGTTCCTCCCCATCCTCTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTCTAGAAGACAGTGTCACCATGTTCCTCCCCATCCTCTGACT  200

seq1  CTTCCACAGTCTTCCCTGAGTCTTCCGGGTGGGATCTTGTCAATCACGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGTCTTCCCTGAGTCTTCCGGGTGGGATCTTGTCAATCACGGT  250

seq1  TTGAAGTGTCTTCTCTAGGTCAGCGTCCTTTGTTCCCGATGTCACATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGTCTTCTCTAGGTCAGCGTCCTTTGTTCCCGATGTCACATCTT  300

seq1  CTCCGTGTCACCCTGGCTCCTCCCCTTGCTCTCTCTCGTCATCCTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGTCACCCTGGCTCCTCCCCTTGCTCTCTCTCGTCATCCTGGCAC  350

seq1  GATCATTCTCTTAAGCTTTGCTTTTAAAAGGAGATTTCCAATATTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTCTCTTAAGCTTTGCTTTTAAAAGGAGATTTCCAATATTATTCT  400

seq1  TATTTCGTGTATCTGTCTGTGTGGGGGGTATGCATGGAATACTGTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCGTGTATCTGTCTGTGTGGGGGGTATGCATGGAATACTGTGGCTG  450

seq1  ACAGAGGACAAGGTCAGGTCCCTCAGAACTTGCAGTGAGCCTGCCTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGACAAGGTCAGGTCCCTCAGAACTTGCAGTGAGCCTGCCTATGT  500

seq1  AACGCTTGAGGCTAAACTTGGTTTGTCAGTTGCAAGATCAGTGCACACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTTGAGGCTAAACTTGGTTTGTCAGTTGCAAGATCAGTGCACACTC  550

seq1  CTACCCACAGAGTCATCTCTCCAGCCCCTGCTCCTGTCCCACAGCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACAGAGTCATCTCTCCAGCCCCTGCTCCTGTCCCACAGCCATTT  600

seq1  CTCCAGTAACGCCCCCACCCCTAGCTTAAGATGGCTATTTGCCTCTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTAACGCCCCCACCCCTAGCTTAAGATGGCTATTTGCCTCTGATC  650

seq1  ACTAGATCTTAACTCCTTGGAATTC  675
      |||||||||||||||||||||||||
seq2  ACTAGATCTTAACTCCTTGGAATTC  675