BAC Information

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BAC

Clone NameB6Ng01-150N24
Chromosome16 (Build37)
Map Location 48,201,123 - 48,313,706
singlet/doubletdoublet
Overlap geneEG637273, Dppa4, Dppa2
Upstream geneLOC628776, EG667741, EG639644
Downstream geneEG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150N24.bB6Ng01-150N24.g
ACCDH946842DH946843
length942245
definitionDH946842|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N24, 5' end.DH946843|Mus musculus domesticus DNA, BAC clone: B6Ng01-150N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,201,123 - 48,202,082)(48,313,466 - 48,313,706)
sequence
gaattcatatcgctcaagtgttgaacagtgcaccgccatttaaattgtct
ttgcttctctgctattccattttcttttatctcttttaaaagtgaagctt
gagacataactgaagtttaaatgtaacttttacagaatatttttctaaac
tctgtatttctaggactatgaataatttgctggggaaggggtatttacca
ctgttatgatgtgtctttcataagcagcaaaaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaaggaagaaagcaagcaagcaa
gcgagccaaatgctacatagaaaagctgtgttgatagtagatcagtccta
ggagtaagtagagaatataaagtgaacatttcaatatcaaagaagatttc
atgatagatagaatatctacaaataaacagtacaacttggaaaccagtaa
ctactgcacttaaggttttcaacctgactttaaagaccattttcctttgt
gctagatacattttgcacatatgcaaagtcctatggaacatgaaatgtgt
tagtaccaagaatgacatttttttttcaaacttacctaaaagcgtgcact
ctcatattgaagcaatatcatttcttgggaaatgtttaccaacagaagga
acatgaatgcttttaagcacatctactaaatgtgattttactcaaggaac
ttacccacatctcaagagggaggtttttgagtctcaatctgttcacctcc
ctaggtgcacgtagagctgttccagcctgttaattacattattgctatag
ctattacagactgatagtctgtgattaaaggacagtacactagagcatgc
agcatttgcttcagtccgtgatgaattaacacaactgctgac
acttgaccaagatcacagaccccttaaaataggagacctgggacagtaag
acatatttacataataaatcctaataagattctatcttattttaatcata
tgcttgctgtgaatctgccatatgcattctagacagctgaaatattccct
ctcccttcccctccctccccctcccctcccctctccactcccctcaccct
ctcctcccccttctccttctcctccgcccccctcctcttttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48201123_48202082
seq2: B6Ng01-150N24.b_45_986

seq1  GAATTCATATCGCTCAAGTGTTGAACAGTGCACCGCCATTTAAATTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCGCTCAAGTGTTGAACAGTGCACCGCCATTTAAATTGTCT  50

seq1  TTGCTTCTCTGCTATTCCATTTTCTTTTATCTCTTTTAAAAGTGAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTCTGCTATTCCATTTTCTTTTATCTCTTTTAAAAGTGAAGCTT  100

seq1  GAGACATAACTGAAGTTTAAATGTAACTTTTACAGAATATTTTTCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAACTGAAGTTTAAATGTAACTTTTACAGAATATTTTTCTAAAC  150

seq1  TCTGTATTTCTAGGACTATGAATAATTTGCTGGGGAAGGGGTATTTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTCTAGGACTATGAATAATTTGCTGGGGAAGGGGTATTTACCA  200

seq1  CTGTTATGATGTGTCTTTCATAAGCAGCAAA----AAAGAAAGAAAGAAA  246
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  CTGTTATGATGTGTCTTTCATAAGCAGCAAAAAAGAAAGAAAGAAAGAAA  250

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG  300

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGCAAGCAAGCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGCAAGCAAGCAA  350

seq1  GCGAGCCAAATGCTACATAGAAAAGCTGTGTTGATAGTAGATCAGTCCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCAAATGCTACATAGAAAAGCTGTGTTGATAGTAGATCAGTCCTA  400

seq1  GGAGTAAGTAGAGAATATAAAGTGAACATTTCAATATCAAAGAAGATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGTAGAGAATATAAAGTGAACATTTCAATATCAAAGAAGATTTC  450

seq1  ATGATAGATAGAATATCTACAAATAAACAGTACAACTTGGAAACCAGTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGATAGAATATCTACAAATAAACAGTACAACTTGGAAACCAGTAA  500

seq1  CTACTGCACTTAAGGTTTTCAACCTGACTTTAAAGACCATTTTCCTTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCACTTAAGGTTTTCAACCTGACTTTAAAGACCATTTTCCTTTGT  550

seq1  GCTAGATACATTTTGCACATATGCAAAGTCCTATGGAACATGAAATGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATACATTTTGCACATATGCAAAGTCCTATGGAACATGAAATGTGT  600

seq1  TAGTACCAAGAATGACATTTTTTTTTCAAACTTACCTAAAAGCGTGCACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCAAGAATGACATTTTTTTTTCAAACTTACCTAAAAGCGTGCACT  650

seq1  CTCATATTGAAGCAATATCATTTCTTGGGAAATGTTTACCAACAGAAGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTGAAGCAATATCATTTCTTGGGAAATGTTTACCAACAGAAGGA  700

seq1  ACATGAATGCTTTTAAGCACATCTACTAAATGTGATTTTACTCAAGGAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGCTTTTAAGCACATCTACTAAATGTGATTTTACTCAAGGAAC  750

seq1  TTACCCACATCTCAAGAGGGAGGTTTTTGAAGTCTCAATCTGTTCACCTC  796
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTACCCACATCTCAAGAGGGAGGTTTTTG-AGTCTCAATCTGTTCACCTC  799

seq1  CCTAGGTGCACGTAGAGCTGTTTCCAGCCTGTTAAAATTACAATTATTGC  846
      |||||||||||||||||||| ||||||||||||  |||||| ||||||||
seq2  CCTAGGTGCACGTAGAGCTG-TTCCAGCCTGTT--AATTAC-ATTATTGC  845

seq1  TATAAGCTATTTACAGACTGATTAGTCTTGGTGATTAAAGGACAAGTAAC  896
      ||| ||||| ||||||||||| ||||||  ||||||||||||| ||||  
seq2  TAT-AGCTA-TTACAGACTGA-TAGTCT--GTGATTAAAGGAC-AGTA--  887

seq1  CACCTAGAGCATGCAGCATTTTGGCTTCCAGTCCCGTGGATGAATTTACA  946
      || ||||||||||||||||||  |||| |||| |||| ||||||||   |
seq2  CA-CTAGAGCATGCAGCATTT--GCTT-CAGT-CCGT-GATGAATT---A  928

seq1  ACACAACTGCTGAC  960
      ||||||||||||||
seq2  ACACAACTGCTGAC  942

seq1: chr16_48313466_48313706
seq2: B6Ng01-150N24.g_69_313 (reverse)

seq1  AGAGAGA----GAGGAGAGAAGAGGAGGAGGGGAGGGGAGAGGAGAGGAG  46
      ||||| |    |||| | |  |||||| ||| || ||| |||||||||  
seq2  AGAGAAAAGAGGAGGGGGGCGGAGGAGAAGGAGAAGGGGGAGGAGAGGGT  50

seq1  GAGGGGAGAGGAGAGGGGAGGGGAGGGGGAGGGAGGGGAAGGGAGAGGGA  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGTGGAGAGGGGAGGGGAGGGGGAGGGAGGGGAAGGGAGAGGGA  100

seq1  ATATTTCAGCTGTCTAGAATGCATATGGCAGATTCACAGCAAGCATATGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGCTGTCTAGAATGCATATGGCAGATTCACAGCAAGCATATGA  150

seq1  TTAAAATAAGATAGAATCTTATTAGGATTTATTATGTAAATATGTCTTAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAGATAGAATCTTATTAGGATTTATTATGTAAATATGTCTTAC  200

seq1  TGTCCCAGGTCTCCTATTTTAAGGGGTCTGTGATCTTGGTCAAGT  241
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGGTCTCCTATTTTAAGGGGTCTGTGATCTTGGTCAAGT  245