BAC Information

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BAC

Clone NameB6Ng01-153A24
Chromosome16 (Build37)
Map Location 73,440,396 - 73,560,778
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153A24.bB6Ng01-153A24.g
ACCDH948477DH948478
length1,1091,164
definitionDH948477|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A24, 5' end.DH948478|Mus musculus domesticus DNA, BAC clone: B6Ng01-153A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,440,396 - 73,441,494)(73,559,611 - 73,560,778)
sequence
gaattcagttctattttgaaggccatgccacgggattcatattcaggttt
tactgtatgtcaaagcatttcaggttgctacttgaagatattaattctgt
tacttttcaagttgaaataattgtcatattgaggagaaatccatgaaaac
tctttctactgtagctatagaaggattagaatccagcaaaactgacatat
atatatatatatatatatacacacatatatatgtatgtgtatatatatat
atgtatgtatataccatgtaggcattattcataaaggaaaaaatctaaat
atagtaatagtgctctatgttataagttgtgtaagtggcttagaacttaa
atacagttaactgctttaaaaacttgggtgtttaaaattccttttggtat
taacaaattgagtttttctctaagcctatgaaatcagagaacagtcggtg
tgaggcaaaatccaaaaatacagaccaaaaatagagggtccacgtcttgt
atcctaacggtgagtgatgaagagtgactttcatgtttgcattggggagg
acaggaaaagcttaatttcttctgcatatcttaaaaaagaaagtttccat
agcattctacttcacagctcagaaagtttccaaaaagtttcatgaaatct
tttgcaggcttgtgaagcaaagactagaacgcagagcaacagagaaatat
acacttacttttaaaatggaattattaccaccttcatttcagaacaaaaa
tagattttaattatagacagattttaaaattaggaaaaataaccaaaata
agcagaatatattagtgttctctctctctctttctctctctctctctctc
tcttcccattccttattttattcccctcccccaccctcctactgctctat
gtcccatacctccttccccacaccctgtctccaagaggatgtccccaccc
cccgaccccatctgactctaaactccctggggcctccagtctttttgagg
gtaaggtgcatgatctctgaatgaacacaagaacctggcagtcctctcac
tggtatgtgtgtgtggggacctctattcagctagtggtagcctcccacac
ctcacgtaa
gaattcaatcaggccaggaagcaggagctgatgcacaggtcatggagggg
tgttctttactggcttgcttcccctggcttgctcagcctgctctcttata
gaacccaagactaccagcgctgagatggtcccacccacaaggggcctttc
ccccttgatcactaattgagaaaatgccttacagttggatctcatggagg
catttcctcaactgaagctcctttctctgtggtaaccccagctgtgtcaa
gttgacacaaaactagccagtacaatggccaactaggccatcctctgcta
catagggattatatgattcttaatacacagattatgactgaacattgttg
agaaagataaaatacctctatccgtgcattcattcacatattgaagaact
cactaagcactgttcatatttataagaaatctagagccagcttcaagcaa
gagaaaatgaaaatgacatgattataattggagtaataggaagtacttca
tcttggtgattgctagaacttgattactctagagcagtggttttcaacct
gtgggtctcaaccctttgtggggacatcaaagtccccttttaaggggtag
cctatcagataccctgcctgtcaaatatttacattccgatccataagatc
agaattgcagttacaaagcagcaatgaaataattttacaggtgtgggttc
accacaacctgaggaaccatattaaagggtcacagcattaggaaggttga
gaaccactgttctacaagaactggtgaatgagatagagagtgtaacttta
gcaatctctattcaggtaagtagcagttttcacatctgataggtaatgaa
ccaagaagagggacattatctgagcaatagagggaagccacagttatagc
tgtagtaaagaagacgtgttttatctatgttactgaaattcttcactctg
gtagaattttatggatttttatgtgagcagaaacgccttcattctaatag
gaagaacaaacttatggagaacaggaacaggatgtattatttggtggata
cttaactttttataaaacggtcggaactgatgttgggagaccatccaatg
cttaaaggtcagagagtggcttgaatcccactcaggtttgtgccatcctc
tggcttatgatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73440396_73441494
seq2: B6Ng01-153A24.b_39_1147

seq1  GAATTCAGTTCTATTTTGAAGGCCATGCCACGGGATTCATATTCAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTATTTTGAAGGCCATGCCACGGGATTCATATTCAGGTTT  50

seq1  TACTGTATGTCAAAGCATTTCAGGTTGCTACTTGAAGATATTAATTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATGTCAAAGCATTTCAGGTTGCTACTTGAAGATATTAATTCTGT  100

seq1  TACTTTTCAAGTTGAAATAATTGTCATATTGAGGAGAAATCCATGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAAGTTGAAATAATTGTCATATTGAGGAGAAATCCATGAAAAC  150

seq1  TCTTTCTACTGTAGCTATAGAAGGATTAGAATCCAGCAAAACTGACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTACTGTAGCTATAGAAGGATTAGAATCCAGCAAAACTGACATAT  200

seq1  ATATATATATATATATATACACACATATATATGTATGTGTATATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATACACACATATATATGTATGTGTATATATATAT  250

seq1  ATGTATGTATATACCATGTAGGCATTATTCATAAAGGAAAAAATCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATATACCATGTAGGCATTATTCATAAAGGAAAAAATCTAAAT  300

seq1  ATAGTAATAGTGCTCTATGTTATAAGTTGTGTAAGTGGCTTAGAACTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATAGTGCTCTATGTTATAAGTTGTGTAAGTGGCTTAGAACTTAA  350

seq1  ATACAGTTAACTGCTTTAAAAACTTGGGTGTTTAAAATTCCTTTTGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTAACTGCTTTAAAAACTTGGGTGTTTAAAATTCCTTTTGGTAT  400

seq1  TAACAAATTGAGTTTTTCTCTAAGCCTATGAAATCAGAGAACAGTCGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATTGAGTTTTTCTCTAAGCCTATGAAATCAGAGAACAGTCGGTG  450

seq1  TGAGGCAAAATCCAAAAATACAGACCAAAAATAGAGGGTCCACGTCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAAATCCAAAAATACAGACCAAAAATAGAGGGTCCACGTCTTGT  500

seq1  ATCCTAACGGTGAGTGATGAAGAGTGACTTTCATGTTTGCATTGGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAACGGTGAGTGATGAAGAGTGACTTTCATGTTTGCATTGGGGAGG  550

seq1  ACAGGAAAAGCTTAATTTCTTCTGCATATCTTAAAAAAGAAAGTTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAAGCTTAATTTCTTCTGCATATCTTAAAAAAGAAAGTTTCCAT  600

seq1  AGCATTCTACTTCACAGCTCAGAAAGTTTCCAAAAAGTTTCATGAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTACTTCACAGCTCAGAAAGTTTCCAAAAAGTTTCATGAAATCT  650

seq1  TTTGCAGGCTTGTGAAGCAAAGACTAGAACGCAGAGCAACAGAGAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGCTTGTGAAGCAAAGACTAGAACGCAGAGCAACAGAGAAATAT  700

seq1  ACACTTACTTTTAAAATGGAATTATTACCACCTTCATTTCAGAACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACTTTTAAAATGGAATTATTACCACCTTCATTTCAGAACAAAAA  750

seq1  TAGATTTTAATTATAGACAGATTTTAAAATTAGGAAAAATAACCAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTAATTATAGACAGATTTTAAAATTAGGAAAAATAACCAAAATA  800

seq1  AGCAGAATATATTAGTGTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATATATTAGTGTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTC  850

seq1  TCTTCCCATTCCTTATTTTATTCCCCTCCCCCACCCTCCTACTGCTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATTCCTTATTTTATTCCCCTCCCCCACCCTCCTACTGCTCTAT  900

seq1  GTCCCATACCTCCTTCCCCACACCCTGTCTCCAAGAGGATGTCCCCA-CC  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCCCATACCTCCTTCCCCACACCCTGTCTCCAAGAGGATGTCCCCACCC  950

seq1  CCCGACCCCATCTGACCTCTAAACTCCCTGGGGCCTCCAGTC-TCTTGAG  998
      ||||||||||||||| |||||||||||||||||||||||||| | |||||
seq2  CCCGACCCCATCTGA-CTCTAAACTCCCTGGGGCCTCCAGTCTTTTTGAG  999

seq1  GGTTAGGTGCATGATCTCTGAATGAACACA--GACCTGGCAGTCCTCT-A  1045
      ||| ||||||||||||||||||||||||||   ||||||||||||||| |
seq2  GGTAAGGTGCATGATCTCTGAATGAACACAAGAACCTGGCAGTCCTCTCA  1049

seq1  CT-GTATGTGTGT-TGGGGACCTCATATCAGCTGGT-GTAGCCTCC--AA  1090
      || |||||||||| ||||||||||   |||||| || |||||||||   |
seq2  CTGGTATGTGTGTGTGGGGACCTCTATTCAGCTAGTGGTAGCCTCCCACA  1099

seq1  CCTCA-GTAA  1099
      ||||| ||||
seq2  CCTCACGTAA  1109

seq1: chr16_73559611_73560778
seq2: B6Ng01-153A24.g_67_1230 (reverse)

seq1  GTCATCAACTATAGCCAGAGGGATTGTCGCA-AAACCTGA-TGTGGATCA  48
      |||||||  || |||||||||     | ||| |||||||| || |  |||
seq2  GTCATCA--TA-AGCCAGAGG----ATGGCACAAACCTGAGTGGGATTCA  43

seq1  AGGCACTC-CTGACCTTTAAGCATT-GATGGCTTCCCAACAATCAAGTCC  96
      || ||||| |||||||||||||||| |||||  ||||||| ||| ||| |
seq2  AGCCACTCTCTGACCTTTAAGCATTGGATGGTCTCCCAAC-ATC-AGTTC  91

seq1  CAAACACTTTATAAAAAAGTAAAAGTATCCA-CAATAAATACAT-CTG-T  143
      | | |  ||||||||||  |  ||||||||| |||  ||||||| ||| |
seq2  CGACCGTTTTATAAAAAGTT--AAGTATCCACCAAATAATACATCCTGTT  139

seq1  CCTGTTCTCCAT-AGTTTG-TCTTCCTATTTAGAATGAA-GCGTTTCTGC  190
      |||||||||||| |||||| |||||||| |||||||||| ||||||||||
seq2  CCTGTTCTCCATAAGTTTGTTCTTCCTA-TTAGAATGAAGGCGTTTCTGC  188

seq1  TCACATAAAAATCCATAAAATTCTACCAGAGTGAAGAATTTCAGTAACAT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAAAATCCATAAAATTCTACCAGAGTGAAGAATTTCAGTAACAT  238

seq1  AGATAAAACACGTCTTCTTTACCTACAGCTATAACTGTGGCTTCCCTCTA  290
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGATAAAACACGTCTTCTTTA-CTACAGCTATAACTGTGGCTTCCCTCTA  287

seq1  TTGCCTCAGATAATGTCCCTCTTCTTGGTTCATTACCTATCAGATGTGAA  340
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-CTCAGATAATGTCCCTCTTCTTGGTTCATTACCTATCAGATGTGAA  336

seq1  AACTGCTACTTACCTGAATAGAGATTGCTAAAGTTACACTCTCTATCTCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTACTTACCTGAATAGAGATTGCTAAAGTTACACTCTCTATCTCA  386

seq1  TTCACCAGTTCTTGTAGAACAGTGGTTCTCAACCTTCCTAATGCTGTGAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGTTCTTGTAGAACAGTGGTTCTCAACCTTCCTAATGCTGTGAC  436

seq1  CCTTTAATATGGTTCCTCAGGTTGTGGTGAACCCACACCTGTAAAATTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATATGGTTCCTCAGGTTGTGGTGAACCCACACCTGTAAAATTAT  486

seq1  TTCATTGCTGCTTTGTAACTGCAATTCTGATCTTATGGATCGGAATGTAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTGCTTTGTAACTGCAATTCTGATCTTATGGATCGGAATGTAA  536

seq1  ATATTTGACAGGCAGGGTATCTGATAGGCTACCCCTTAAAAGGGGACTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGACAGGCAGGGTATCTGATAGGCTACCCCTTAAAAGGGGACTTT  586

seq1  GATGTCCCCACAAAGGGTTGAGACCCACAGGTTGAAAACCACTGCTCTAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCCACAAAGGGTTGAGACCCACAGGTTGAAAACCACTGCTCTAG  636

seq1  AGTAATCAAGTTCTAGCAATCACCAAGATGAAGTACTTCCTATTACTCCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCAAGTTCTAGCAATCACCAAGATGAAGTACTTCCTATTACTCCA  686

seq1  ATTATAATCATGTCATTTTCATTTTCTCTTGCTTGAAGCTGGCTCTAGAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATCATGTCATTTTCATTTTCTCTTGCTTGAAGCTGGCTCTAGAT  736

seq1  TTCTTATAAATATGAACAGTGCTTAGTGAGTTCTTCAATATGTGAATGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAAATATGAACAGTGCTTAGTGAGTTCTTCAATATGTGAATGAA  786

seq1  TGCACGGATAGAGGTATTTTATCTTTCTCAACAATGTTCAGTCATAATCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGATAGAGGTATTTTATCTTTCTCAACAATGTTCAGTCATAATCT  836

seq1  GTGTATTAAGAATCATATAATCCCTATGTAGCAGAGGATGGCCTAGTTGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAAGAATCATATAATCCCTATGTAGCAGAGGATGGCCTAGTTGG  886

seq1  CCATTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGGGTTACCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGGGTTACCAC  936

seq1  AGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAA  986

seq1  GGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGA  1036

seq1  CCATCTCAGCGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAGCGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAA  1086

seq1  GCCAGGGGAAGCAAGCCAGTAAAGAACACCCCTCCATGACCTGTGCATCA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGAAGCAAGCCAGTAAAGAACACCCCTCCATGACCTGTGCATCA  1136

seq1  GCTCCTGCTTCCTGGCCTGATTGAATTC  1168
      ||||||||||||||||||||||||||||
seq2  GCTCCTGCTTCCTGGCCTGATTGAATTC  1164