BAC Information

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BAC

Clone NameB6Ng01-155I09
Chromosome16 (Build37)15 (Build37)
Map Location 31,966,486 - 31,967,04354,699,820 - 54,700,950
singlet/doubletsingletsinglet
Overlap geneSenp5
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2
Downstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155I09.bB6Ng01-155I09.g
ACCDH950281DH950282
length9501,110
definitionDH950281|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I09, 5' end.DH950282|Mus musculus domesticus DNA, BAC clone: B6Ng01-155I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,966,486 - 31,967,043)(54,699,820 - 54,700,950)
sequence
gaattctaaaatcagcgacgaaagcacaatgacacattatcactaagcat
tctaggaataacaaagattttaagggaataacgtaaataactgccttctc
caaaattaaataacctgggaaaatggacaacattcttagaaattcaccgg
ctaccaagcttagccaaaagaaatggattctgagcaaatatgtggatcat
ggtggccaaggcctggcctcccagcactgagtgactgaggctgagaaggg
tgcaccataactgtgaagccatcctgggctacgtaggttccaagcctacc
caggctacaggaaaataccctgtctccccccccccccccaccccccaaac
aaccaaacgaaaccaaaacaaatcataatgcataataattgactgaatga
gcaacgaagacagtgtcctgcagaagagcccaggaccaggtgatttcaca
agggcattctagcagactttgtttgttttctgagacacgctctctgtgtg
tagccccggctgtcctggaactcactctgtagtactggctggcctcgaac
tcccagagatccacctgcctctgcctcctgcgtgctgggactgagattat
gcacctccatgcccagaataattctaagagacctttaacaccagtcttaa
aacgttctgcaaaatgtaagaggagggtatatctcaaagtttattgtgag
agatgagtatttttccaatacagatacacacacacacacacacacacaca
cacacacacacacacacacatacacacacagagagagagagacagagaca
gagagagataacaaaataagttatacagtatttgctataaataaagataa
aaaatcctcaacaaaatattaacaaattaattccagcactatacaaaaat
gtattcaatatcaagtgagattttaactcaagaattatcccaaggataaa

gaattcttaggaaacaccaaaggcatttgtatgagacaacaatccttcaa
gtctaaactcatcatttcctgaacccaggctattgtgaatgaggaaaaga
agctgataaagggtggccagttgcttcagccagcaacgtgcttgtcacca
tgcctgacaacctgagtttccttcccagaaccaacgtagtggaaggaaca
gactaactcccacaggttttccttacacctccacacatgtgttgcgacac
atggcactgttgtgcatctgtgcttacccacatacctaggaacacagtaa
gtgaatccaatttaagggtttttttttttcaggatcagcaaatcacgggt
caaatcgtagctctgccaccgaccgtcaccctctgagctagctccttcaa
ccctctctctgcctttaacttctactgtctataaagataatggcaatata
tatcccataaggatactggagggattaaataagaatgtgtctatattcag
ctgtaacaacaataagaccaagactcatctttgtactcaacacatagcac
tgattacagattaaataaaatattattatatttacacagtctcttattta
atcattccccacaacccttagtctatgcgtgaagaccctgaggcacagtg
tgttaaagatgcttctcctgtgtctcaatgggagcttggaagagttgcat
tgtgaacaacagtatatggtcactattatgctgtttcttgatctgctcac
tgtctctcccaaaatgaatggagagcataaaatatttcactataggtagt
acgactccaaaggtttccaatgaagtttctcagctatttaatctccccaa
taaatctacccaatttactgatgtcagaaattctttttcaatagatttgc
aaatgtttgcatacaccttaaaatgcatgtgctaaaaataaaaaggcttg
ccttcagttcaggagcaaaggtactgaggcacaaggacgaaaagcacatg
gggtaaaaagggaagaaacaccatatttactgattcacaactttgactct
ggatgtgttcatccggtcgactagacataacttttgtcacatagagctaa
cttggaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31966486_31967043
seq2: B6Ng01-155I09.b_554_815

seq1  GGCTGTCCTGAAACTCACTCTGTAGACCAATTTGCCCTCAAATCCACCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCTGCTTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAATACATTTAAATTTATCAAGCTGTTCCTTTTTTTCTTTTTCAGTGTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGCCTTCCTTACTCTATGAATGAACAAAACACCAAAACTTAACCAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTCATGGTTTTTTTGTGCTTTTTAAAAAAATTTTCTTTTCTCTTTTGA  250
                                          || | ||       
seq2  ----------------------------------GGCTGTCCT-------  9

seq1  GATAGGGTCTCACTTTGTAGTCCTCACT-GAGTGGAATT--CATAGATCC  297
          ||  |||||| |||||| ||  || |  | ||| |  || ||||||
seq2  ----GGAACTCACTCTGTAGTACTGGCTGGCCTCGAACTCCCAGAGATCC  55

seq1  CCCTGTATCTGCCTCCTGACTGCTGGGATTAGAG-GCATGTACCATCAAG  346
       ||||  |||||||||||  |||||||| | |||   ||| |||  || |
seq2  ACCTGCCTCTGCCTCCTGCGTGCTGGGACT-GAGATTATGCACCTCCATG  104

seq1  GCCAGCATGTTAATGTTTTCTATCTGTTCTTATAAGTAGTATAATGCAAG  396
       |||| |   |||    |||||   |  |||          |||  | ||
seq2  CCCAGAA---TAA----TTCTAAGAGACCTT----------TAACACCAG  137

seq1  CTTCTATAAC-TTTTCCAA---GTAACAGCTAATTTTCCCAATGTCATAA  442
       |  || ||| || | |||   |||| ||            | |  ||| 
seq2  -TCTTAAAACGTTCTGCAAAATGTAAGAG-----------GAGGGTATAT  175

seq1  CTGAAAAGTTTGTCTTTTCTAAACCTTACCATAT-ACTAAATTTGCTTGC  491
      || |||     || | || | |        | || | ||  |||      
seq2  CTCAAA-----GTTTATTGTGA-------GAGATGAGTATTTTT------  207

seq1  TCGCGCTCTCCCCCCCCCCCCATACACACACACACACACACACACACACA  541
                  ||    |  |||||||||||||||||||||||||||||
seq2  ------------CCAATACAGATACACACACACACACACACACACACACA  245

seq1  CACACACACACACACAC  558
      |||||||||||||||||
seq2  CACACACACACACACAC  262

seq1: chr15_54699820_54700950
seq2: B6Ng01-155I09.g_67_1176

seq1  GAATTCTTAGGAAACACCAAAGGCATTTGTATGAGACAACAATCCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAAACACCAAAGGCATTTGTATGAGACAACAATCCTTCAA  50

seq1  GTCTAAACTCATCATTTCCTGAACCCAGGCTATTGTGAATGAGGAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACTCATCATTTCCTGAACCCAGGCTATTGTGAATGAGGAAAAGA  100

seq1  AGCTGATAAAGGGTGGCCAGTTGCTTCAGCCAGCAACGTGCTTGTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATAAAGGGTGGCCAGTTGCTTCAGCCAGCAACGTGCTTGTCACCA  150

seq1  TGCCTGACAACCTGAGTTTCCTTCCCAGAACCAACGTAGTGGAAGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACAACCTGAGTTTCCTTCCCAGAACCAACGTAGTGGAAGGAACA  200

seq1  GACTAACTCCCACAGGTTTTCCTTACACCTCCACACATGTGTTGCGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACTCCCACAGGTTTTCCTTACACCTCCACACATGTGTTGCGACAC  250

seq1  ATGGCACTGTTGTGCATCTGTGCTTACCCACATACCTAGGAACACAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTGTTGTGCATCTGTGCTTACCCACATACCTAGGAACACAGTAA  300

seq1  GTGAATCCAATTTAAGGGTTTTTTTTTTTCAGGATCAGCAAATCACGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCCAATTTAAGGGTTTTTTTTTTTCAGGATCAGCAAATCACGGGT  350

seq1  CAAATCGTAGCTCTGCCACCGACCGTCACCCTCTGAGCTAGCTCCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGTAGCTCTGCCACCGACCGTCACCCTCTGAGCTAGCTCCTTCAA  400

seq1  CCCTCTCTCTGCCTTTAACTTCTACTGTCTATAAAGATAATGGCAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTGCCTTTAACTTCTACTGTCTATAAAGATAATGGCAATATA  450

seq1  TATCCCATAAGGATACTGGAGGGATTAAATAAGAATGTGTCTATATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATAAGGATACTGGAGGGATTAAATAAGAATGTGTCTATATTCAG  500

seq1  CTGTAACAACAATAAGACCAAGACTCATCTTTGTACTCAACACATAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAACAATAAGACCAAGACTCATCTTTGTACTCAACACATAGCAC  550

seq1  TGATTACAGATTAAATAAAATATTATTATATTTACACAGTCTCTTATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACAGATTAAATAAAATATTATTATATTTACACAGTCTCTTATTTA  600

seq1  ATCATTCCCCACAACCCTTAGTCTATGCGTGAAGACCCTGAGGCACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCCCCACAACCCTTAGTCTATGCGTGAAGACCCTGAGGCACAGTG  650

seq1  TGTTAAAGATGCTTCTCCTGTGTCTCAATGGGAGCTTGGAAGAGTTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGATGCTTCTCCTGTGTCTCAATGGGAGCTTGGAAGAGTTGCAT  700

seq1  TGTGAACAACAGTATATGGTCACTATTATGCTGTTTCTTGACCTGCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGAACAACAGTATATGGTCACTATTATGCTGTTTCTTGATCTGCTCAC  750

seq1  TGTCTCTCCCAAAATGAATGGAGAGCATAAAATATTTCACTATAGGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCCCAAAATGAATGGAGAGCATAAAATATTTCACTATAGGTAGT  800

seq1  ACGACTCCAAAGGTTTCCAATGAAGTTTCTCAGCTATTTAATCTCCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTCCAAAGGTTTCCAATGAAGTTTCTCAGCTATTTAATCTCCCCAA  850

seq1  TAAATCTACCCAATTTACTGATGTCAGAAATTCTTTTTCAAATAGATTTG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAATCTACCCAATTTACTGATGTCAGAAATTCTTTTTC-AATAGATTTG  899

seq1  CAAATGTTTGCATACACCTTAAAATGCAGGTGCTAAAAATAAAAAGGCTT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAATGTTTGCATACACCTTAAAATGCATGTGCTAAAAATAAAAAGGCTT  949

seq1  GCCTTCCAGTTCAAGGGAGCAAAGGTACTGAGGGCACAAAGGACAGAAAA  1000
      ||||| |||||||  |||||||||||||||| ||||| |||||| |||||
seq2  GCCTT-CAGTTCA--GGAGCAAAGGTACTGA-GGCAC-AAGGAC-GAAAA  993

seq1  GCACATGGGGGAAAAAAAGGGAAGAAACACCAATATTTTACTGATTTCAC  1050
      ||||||||||   |||||||||||||||||| ||| |||||||| |||||
seq2  GCACATGGGG--TAAAAAGGGAAGAAACACC-ATA-TTTACTGA-TTCAC  1038

seq1  AACATTGACCCTGGAATGTGTCCCATTCGTGTCGACTTAGGAACATAAC-  1099
      ||| ||||| |||| ||||||  ||| || |||||| |||  ||||||| 
seq2  AACTTTGACTCTGG-ATGTGT-TCATCCG-GTCGAC-TAG--ACATAACT  1082

seq1  TTTGTCAACTTAAGAGCATAACTTGGAGAAAC  1131
      |||||||  |  ||||| ||||||||| ||||
seq2  TTTGTCACAT--AGAGC-TAACTTGGA-AAAC  1110