BAC Information

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BAC

Clone NameB6Ng01-155N14
Chromosome16 (Build37)Y (Build37)
Map Location 72,442,401 - 72,443,6401,120,578 - 1,121,068
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155N14.bB6Ng01-155N14.g
ACCDH950513DH950514
length1,193687
definitionDH950513|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N14, 5' end.DH950514|Mus musculus domesticus DNA, BAC clone: B6Ng01-155N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,442,401 - 72,443,640)(1,120,578 - 1,121,068)
sequence
gaattcatttggagaccagcaagaaagtccataaataggcctgctgcact
gcctactgacttgagttcaatccataggaccaccaaggtggcagaactta
tttgggggctggagatatagcacatttggtaagtgtttgctgaacatgcc
taaagccttaggtttgtttcacggcatcgtgtgtagtggtcagcgtggca
gaaataagcagaagctcagtagcctgcagcctcttcagggattcagagtc
caatctggatgagtgtgctaattccctctgaaatacacacttccatcttg
aaggaagatccttaagatacaagatgtcaaaacaggtgacatcctgaaac
acatgctgtaaggaaactctttaaactcaggaagtaaacatcttaatcgc
ttcaggaagtacctgaaacagaccagatttactagggctcttcctatgtt
ggacttgggtgacttccttagactaatcagttgcctaactgaggtgacta
gtcatttctccctttctctccaggaagagtcacacaccacagagggctat
attaaaaactgtaataacaacaataacagaaatgtaaagaaaatataaga
aatataaagaaaatattttcttgtagttgaaatttgctaagcctttaaaa
aaattagtaaaatagggctattgggatggcccagaggacttggtatgtat
taaagcctggcctgacgtgaggtcaataatcacagtggaaggtaaaaaat
agacttctgaaaattgtcctccaatttttacatctgtgttgtggaaaatg
cttgctcaaccctcatatacaaaataaataaatgtaaaaaaaatgcaaaa
tgtacataattaaaatagacaaactcaccattattgccattagagtgaca
aaaatggttagattatgatatggattcaccaatgagtcatccctagagct
gctgggtgcatatttaggaaagactttttaaaaacaagtgacagagttca
tgtctcaggatgtcccagctgcactcataacgcctcaccacatgactgct
aataggagtaacaagagagaacagagactgcaaagacagaaccccatgct
agtctatacaagaaccagcaactaagagcttgaaggcgagaaccgtctct
tcagggagaaccttgacgtacctaggtcatgtcagttctgaaa
gaattctttctttctttcttttttaatatttttattattatgtattttcc
tcaattacatttagaatgctatcccaaaagtcccccataccctccccccc
cacttccctacccacccattcccattttttggccctggcattcccctgta
ctggggcatataaagtttgcgtgtccaatgggcctctctttccagtgatg
gccgactaggccatcttttgatacatatgcagctagagtcaagagatcca
gtgtactggttagttcataatgttgtttcacatatagggttgcagttccc
tttagctccttgggtgctttctctagctcctccattgggagccctgtgat
ccatccattagctgactgtgagcatccacttctgtgtttgctaggccccg
gcatcatctcacaagagacagctatatctgggacctttcagcaaaatctt
gctagtgtatgcagtggtgtcagcgtttggaagctgattatggggtggat
ccctggatatggcagtctctagatggtccattctttcatcacagctccaa
actttgtctctgtaactccttccatgggtgttttgttcccaattctaaga
aggggcacagtgttcccactttggtcttcattcttcttgagtttcatgcg
tttagcaattgtatcttatatcttgggtatcctaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72442401_72443640
seq2: B6Ng01-155N14.b_47_1239 (reverse)

seq1  TTTCAGAACTGACCATTTGGCACTAGATGAACTGTCAGAGTGCTCCTCCC  50
      |||||||||||| |||   |  ||||  | || ||||    | | |||||
seq2  TTTCAGAACTGA-CAT---GACCTAG--GTAC-GTCA---AGGTTCTCCC  40

seq1  TGGGGAGGACTGTTTCCTCCGCTCTCAGGCTTCCTTAGTTGCCTGTGGTT  100
      ||  || ||| |||  || |||  ||| |||  |||||||||   |||||
seq2  TGAAGA-GACGGTT--CT-CGCCTTCAAGCT--CTTAGTTGC---TGGTT  81

seq1  CTTTGTATAGGACTAAGGCATTGTGGGTTTCCTTGTTCCCTTTGGCAAGT  150
      | ||||||| |||||  |||   |||| |||  |||   |||||   |||
seq2  C-TTGTATA-GACTA--GCA---TGGGGTTC--TGT---CTTTG--CAGT  117

seq1  CTCTTGTTTCTCTCTTTGTTTACCTCCTATTTAAGCAGTCATGTTGGTGA  200
      ||||   ||||||| |||||   ||||||||  |||||||||| ||||||
seq2  CTCT--GTTCTCTC-TTGTT--ACTCCTATT--AGCAGTCATG-TGGTGA  159

seq1  GGCGTTATGAGTGCAGCTTGGGACATTCCTGGAGACATGAACTCTGTCAC  250
      ||||||||||||||||| ||||||| |||| |||||||||||||||||||
seq2  GGCGTTATGAGTGCAGC-TGGGACA-TCCT-GAGACATGAACTCTGTCAC  206

seq1  TTGTTTTTTAAAAAGTCCTTTCCTAAATATGCACCCAGCAGCTCTAGGGA  300
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTG-TTTTTAAAAAGT-CTTTCCTAAATATGCACCCAGCAGCTCTAGGGA  254

seq1  TGACTCATTGGTGAAATCCATATCATAATCTAACCATTTTTGTCACTCTA  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACTCATTGGTG-AATCCATATCATAATCTAACCATTTTTGTCACTCTA  303

seq1  ATGGCAATAATGGTGAGTTTGTCTATTTTAATTATGTACATTTTGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATAATGGTGAGTTTGTCTATTTTAATTATGTACATTTTGCATTT  353

seq1  TTTTTACATTTATTTATTTTGTATATGAGGGTTGAGCAAGCATTTTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATTTATTTATTTTGTATATGAGGGTTGAGCAAGCATTTTCCAC  403

seq1  AACACAGATGTAAAAATTGGAGGACAATTTTCAGAAGTCTATTTTTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATGTAAAAATTGGAGGACAATTTTCAGAAGTCTATTTTTTACC  453

seq1  TTCCACTGTGATTATTGACCTCACGTCAGGCCAGGCTTTAATACATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTGATTATTGACCTCACGTCAGGCCAGGCTTTAATACATACCA  503

seq1  AGTCCTCTGGGCCATCCCAATAGCCCTATTTTACTAATTTTTTTAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGGGCCATCCCAATAGCCCTATTTTACTAATTTTTTTAAAGGC  553

seq1  TTAGCAAATTTCAACTACAAGAAAATATTTTCTTTATATTTCTTATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAATTTCAACTACAAGAAAATATTTTCTTTATATTTCTTATATTT  603

seq1  TCTTTACATTTCTGTTATTGTTGTTATTACAGTTTTTAATATAGCCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACATTTCTGTTATTGTTGTTATTACAGTTTTTAATATAGCCCTCT  653

seq1  GTGGTGTGTGACTCTTCCTGGAGAGAAAGGGAGAAATGACTAGTCACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGTGACTCTTCCTGGAGAGAAAGGGAGAAATGACTAGTCACCTC  703

seq1  AGTTAGGCAACTGATTAGTCTAAGGAAGTCACCCAAGTCCAACATAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGCAACTGATTAGTCTAAGGAAGTCACCCAAGTCCAACATAGGAA  753

seq1  GAGCCCTAGTAAATCTGGTCTGTTTCAGGTACTTCCTGAAGCGATTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGTAAATCTGGTCTGTTTCAGGTACTTCCTGAAGCGATTAAGA  803

seq1  TGTTTACTTCCTGAGTTTAAAGAGTTTCCTTACAGCATGTGTTTCAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTCCTGAGTTTAAAGAGTTTCCTTACAGCATGTGTTTCAGGAT  853

seq1  GTCACCTGTTTTGACATCTTGTATCTTAAGGATCTTCCTTCAAGATGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGTTTTGACATCTTGTATCTTAAGGATCTTCCTTCAAGATGGAA  903

seq1  GTGTGTATTTCAGAGGGAATTAGCACACTCATCCAGATTGGACTCTGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTTCAGAGGGAATTAGCACACTCATCCAGATTGGACTCTGAAT  953

seq1  CCCTGAAGAGGCTGCAGGCTACTGAGCTTCTGCTTATTTCTGCCACGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGAGGCTGCAGGCTACTGAGCTTCTGCTTATTTCTGCCACGCTG  1003

seq1  ACCACTACACACGATGCCGTGAAACAAACCTAAGGCTTTAGGCATGTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTACACACGATGCCGTGAAACAAACCTAAGGCTTTAGGCATGTTCA  1053

seq1  GCAAACACTTACCAAATGTGCTATATCTCCAGCCCCCAAATAAGTTCTGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTTACCAAATGTGCTATATCTCCAGCCCCCAAATAAGTTCTGC  1103

seq1  CACCTTGGTGGTCCTATGGATTGAACTCAAGTCAGTAGGCAGTGCAGCAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGGTGGTCCTATGGATTGAACTCAAGTCAGTAGGCAGTGCAGCAG  1153

seq1  GCCTATTTATGGACTTTCTTGCTGGTCTCCAAATGAATTC  1240
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTATGGACTTTCTTGCTGGTCTCCAAATGAATTC  1193

seq1: chrY_1120578_1121068
seq2: B6Ng01-155N14.g_86_567

seq1  TTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACAT  50
      ||||||||| ||        ||| |||||| ||||||  |||| ||||||
seq2  TTTTTTAATATT--------TTTATTATTATGTATTTTCCTCAATTACAT  42

seq1  TTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCT  100
      ||  |||||||| |||||||||||||||| || ||| |||||||| ||||
seq2  TTAGAATGCTATCCCAAAAGTCCCCCATACCCTCCC-CCCCCACTTCCCT  91

seq1  GCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCAT  150
       |||||||| ||||  ||||||||||||| ||||||||||||||||||||
seq2  ACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCAT  141

seq1  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  200
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAG  191

seq1  GCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGG  250
      |||||||||||||| ||||||||||||||||||||| ||| | |||||||
seq2  GCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGATCCAGTGTACTGG  241

seq1  TTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCC  300
      |||| |||||| |||||| ||| |||||||||| || |||||||||||||
seq2  TTAGTTCATAATGTTGTTTCACATATAGGGTTGCAGTTCCCTTTAGCTCC  291

seq1  TTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATT  350
      |||| | ||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGGGTGCTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATT  341

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCT  400
      ||||||||||||||||||||||||||||||||| |||||||||||  |||
seq2  AGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATCATCT  391

seq1  CACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTA  450
      ||||||||||||||| |||||   |||||||  |||||||||||||||||
seq2  CACAAGAGACAGCTATATCTGGGACCTTTCAGCAAAATCTTGCTAGTGTA  441

seq1  TGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGAT  491
      |||| ||||||||||||||||| ||||||||||||||||||
seq2  TGCAGTGGTGTCAGCGTTTGGAAGCTGATTATGGGGTGGAT  482