BAC Information

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BAC

Clone NameB6Ng01-159F11
Chromosome16 (Build37)
Map Location 49,209,875 - 49,332,935
singlet/doubletdoublet
Overlap gene1700026J12Rik, LOC386061
Upstream geneEG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15
Downstream geneEG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159F11.bB6Ng01-159F11.g
ACCDH953031DH953032
length1,1241,061
definitionDH953031|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F11, 5' end.DH953032|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,209,875 - 49,211,012)(49,331,843 - 49,332,935)
sequence
gaattctgcacctttaagcagcaccaaacagactaagcttggagacatac
ctgtgccagagggtcttatagcagttgtttcaagactctcttctctccac
atagttgtcagtgtcgggtggaaggagcctcatgctacttgttatgatgc
ctaatacatttttttgtggttaaaagcacatgtgatgctttaacatgaat
cagttactgtttgttatttagtggctacaataggaaaactaaaaatggtt
gcttgtgcttaatacactgtacttgtacatagcttagaaaatctgaccat
gcagtcatgatcagtttttaaaagtaggttatgtagaaatgtaggacatt
tgaaaagatttgatcaaaatttgcagatgacttttcaggagatctgtgta
cccagcagcttcatgtgtgttgtcaagatgtcatctttagtactaaggac
atgatgtacctctggataaagtctaagctcggtgttaatgtgaacttcag
tgtatcatctcgatataaaggaaaagtttatcattaaaatcagaaaagtc
aaatggtcaaagccaccaaagctagaaacaaaagaatatggaagtagtgt
gttgcctcagttctgtgtagaataggatcaatgaattggaagaaaacata
agcagtagttctcggggaggggttcagatatcacatttttagttattttt
gtggaaggcagaactcaacaaaacaaaataaaacataatagaaataacct
tccttctaagataaagccaagagtccagactagacaggagtgcttgttgt
ggacaccaaagtctcccagtttcagtgtcttggttaaggtgaaggtcaag
agggaggagagattcagtgaggctattgtggatttttaatgtttttattg
ttttctgttacatcaaggagttgacacttttacaaagtaatacgtctaca
aactagcctctagtcaatatctagtgaaacttgaagaatgtcaaagtcca
cactgcttgggcaaacagtatctttggagagcatcagctgcttcagcgat
gagaaaagcaaggtgactcagtggcactggaacgtctggcatttggctct
ggaactagagtgtgattagtattc
gaattcaggtactacttggcctacattcatgacaggtccagaggacaaaa
acattttgtaaaagtaggagtagtaaagacctgagcatcatagctagaaa
gcagccagccctggggtcagttcctaggaaacattagctgcatatccctg
ttacttcccacccttcatcgcaggaggccaaatccaccattgactcacgt
aatccataaatcaactacagtgttaacactgggctgctggtaggtctgag
actccagacatgatttgcttggttaggaaatacacacagaaggaagccaa
ggcggctgtcagcggcacatcaagcatttggcacattctccttttcctct
cattgcccagaacttgctccctaaaacattttctgagctggttttctctt
tgtgctgatcactgaatgaagtggagatctgttctctggaaccataaaag
taataaacaaagtaatcaggctatggggttatgcatggcatagcaactgt
caggaaacaagccagacatctatcaggagttaaataggttaataaaccct
gccccccccccccgccccacacacacacacagtgtgtgttccaaaatata
ggaaaacagcacaataagcctgactttcaaaataatcaggcttactaaaa
ttagacacacaaacccagtggattgctctgaatttcaaagttctagaaaa
ttccacccagtgcatatctgacaggaagcatattagtggttgacagaaac
ttgggctgagacagaaaggcttctagttcatgggaaagggcagtggatat
gtccgtagaaatagttttactggtaacacatttgccaacatttatgaatt
ttatatttcaacacattcactatttaggtcaatacactcaaaagctactg
tatgaacactatagaaacagctacttagagggaattcacagagaaatggt
tcagtgtatagaatatacacaaatatgagtactagcccttcatattttta
attcttgtttaaattgacaaaaatgtaccatatgtattttttaaatgatg
ccttggacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_49209875_49211012
seq2: B6Ng01-159F11.b_47_1170

seq1  GAATTCTGCACCTTTAAGCAGCACCAAACAGACTAAGCTTGGAGACATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACCTTTAAGCAGCACCAAACAGACTAAGCTTGGAGACATAC  50

seq1  CTGTGCCAGAGGGTCTTATAGCAGTTGTTTCAAGACTCTCTTCTCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAGAGGGTCTTATAGCAGTTGTTTCAAGACTCTCTTCTCTCCAC  100

seq1  ATAGTTGTCAGTGTCGGGTGGAAGGAGCCTCATGCTACTTGTTATGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTCAGTGTCGGGTGGAAGGAGCCTCATGCTACTTGTTATGATGC  150

seq1  CTAATACATTTTTTTGTGGTTAAAAGCACATGTGATGCTTTAACATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACATTTTTTTGTGGTTAAAAGCACATGTGATGCTTTAACATGAAT  200

seq1  CAGTTACTGTTTGTTATTTAGTGGCTACAATAGGAAAACTAAAAATGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTGTTTGTTATTTAGTGGCTACAATAGGAAAACTAAAAATGGTT  250

seq1  GCTTGTGCTTAATACACTGTACTTGTACATAGCTTAGAAAATCTGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTTAATACACTGTACTTGTACATAGCTTAGAAAATCTGACCAT  300

seq1  GCAGTCATGATCAGTTTTTAAAAGTAGGTTATGTAGAAATGTAGGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATGATCAGTTTTTAAAAGTAGGTTATGTAGAAATGTAGGACATT  350

seq1  TGAAAAGATTTGATCAAAATTTGCAGATGACTTTTCAGGAGATCTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGATTTGATCAAAATTTGCAGATGACTTTTCAGGAGATCTGTGTA  400

seq1  CCCAGCAGCTTCATGTGTGTTGTCAAGATGTCATCTTTAGTACTAAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGCTTCATGTGTGTTGTCAAGATGTCATCTTTAGTACTAAGGAC  450

seq1  ATGATGTACCTCTGGATAAAGTCTAAGCTCGGTGTTAATGTGAACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTACCTCTGGATAAAGTCTAAGCTCGGTGTTAATGTGAACTTCAG  500

seq1  TGTATCATCTCGATATAAAGGAAAAGTTTATCATTAAAATCAGAAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATCTCGATATAAAGGAAAAGTTTATCATTAAAATCAGAAAAGTC  550

seq1  AAATGGTCAAAGCCACCAAAGCTAGAAACAAAAGAATATGGAAGTAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCAAAGCCACCAAAGCTAGAAACAAAAGAATATGGAAGTAGTGT  600

seq1  GTTGCCTCAGTTCTGTGTAGAATAGGATCAATGAATTGGAAGAAAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCAGTTCTGTGTAGAATAGGATCAATGAATTGGAAGAAAACATA  650

seq1  AGCAGTAGTTCTCGGGGAGGGGTTCAGATATCACATTTTTAGTTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGTTCTCGGGGAGGGGTTCAGATATCACATTTTTAGTTATTTTT  700

seq1  GTGGAAGGCAGAACTCAACAAAACAAAATAAAACATAATAGAAATAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGCAGAACTCAACAAAACAAAATAAAACATAATAGAAATAACCT  750

seq1  TCCTTCTAAGATAAAGCCAAGAGTCCAGACTAGACAGGAGTGCTTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAAGATAAAGCCAAGAGTCCAGACTAGACAGGAGTGCTTGTTGT  800

seq1  GGACACCAAAGTCTCCCAGTTTCAGTGTCTTGGTTAAGGTGAAGGTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAAAGTCTCCCAGTTTCAGTGTCTTGGTTAAGGTGAAGGTCAAG  850

seq1  AGGGAGGAGAGATTCAGTGAGGCTATTGTGGATTTTTAATGTTTTTATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGAGATTCAGTGAGGCTATTGTGGATTTTTAATGTTTTTATTG  900

seq1  TTTTCTGTTACAATCAAGGAGTTGACACTTTTTACAAAGTAATACGTCTA  950
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TTTTCTGTTAC-ATCAAGGAGTTGACAC-TTTTACAAAGTAATACGTCTA  948

seq1  CAAACTAGCCTCTAGTCAATATTCTAGTTGAAACTTGAAGGAATGTCAAA  1000
      ||||||||||||||||||||| ||||| ||||||||||| ||||||||||
seq2  CAAACTAGCCTCTAGTCAATA-TCTAG-TGAAACTTGAA-GAATGTCAAA  995

seq1  GTCCACACTGCCTTGGGCAAAACAGTATCCTTGGAGAGCAATCAGCTGGC  1050
      |||||||||| ||||||| |||||||||| ||||||||| ||||||| ||
seq2  GTCCACACTG-CTTGGGC-AAACAGTATCTTTGGAGAGC-ATCAGCT-GC  1041

seq1  TTCAGCGATGAGAAAAGCAAGGTGACCCAGTGGCACTTGGAACGTCTGGC  1100
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TTCAGCGATGAGAAAAGCAAGGTGACTCAGTGGCAC-TGGAACGTCTGGC  1090

seq1  ATCTTGCTCTGG-ACTAGAGATGGTTGGATTTAGTATTC  1138
      || | ||||||| |||||||     ||   |||||||||
seq2  ATTTGGCTCTGGAACTAGAG-----TGTGATTAGTATTC  1124

seq1: chr16_49331843_49332935
seq2: B6Ng01-159F11.g_70_1130 (reverse)

seq1  TATGT-CAAAGCATCATTTTATAAAATACATAT-GTACATATTTTGTCAA  48
      ||||| ||| |||||| |||| ||||||||||| |||||| |||||||||
seq2  TATGTCCAAGGCATCA-TTTAAAAAATACATATGGTACAT-TTTTGTCAA  48

seq1  TTTTTAAAACAAGATTTAAAAATATTGAAAAGGTGGCTATGTACTTCATA  98
      |||   |||||||| ||||||||| ||||     ||||| |||| |||||
seq2  TTT---AAACAAGAATTAAAAATA-TGAA----GGGCTA-GTAC-TCATA  88

seq1  ATTTTGTGTTATAATTCTATAACAACTGAAACCATTTCCCTTCTGTGAAT  148
        |||||| ||| ||||||||   |||| |||||||||   |||||||| 
seq2  --TTTGTG-TAT-ATTCTATA--CACTG-AACCATTTC---TCTGTGAA-  127

seq1  TTCCCTCTAAGTTAGCTTGGTTTCCTTATTAGTGTTTCATACAGTAGCTT  198
      ||||||||||| |||||  |||||  || ||||| ||||||||||||| |
seq2  TTCCCTCTAAG-TAGCT--GTTTC--TA-TAGTG-TTCATACAGTAGC-T  169

seq1  TTTGAGTGTTATTGACCTAAATAGTTGAATGTGTTTGAAATATAAAATTC  248
      |||||||| ||||||||||||||| |||||||| ||||||||||||||||
seq2  TTTGAGTG-TATTGACCTAAATAG-TGAATGTG-TTGAAATATAAAATTC  216

seq1  ATAAATGTTGGCAAATGTGTTACCAGTAAAACTATTTCTACGGACATATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTGGCAAATGTGTTACCAGTAAAACTATTTCTACGGACATATC  266

seq1  CACTGCCCCTTCCCATGAACTAGAAGCC-TTCTGTCTCAGCCCAAGTTTC  347
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  CACTGCCCTTTCCCATGAACTAGAAGCCTTTCTGTCTCAGCCCAAGTTTC  316

seq1  TGTCAACCACTAATATGCTTCCTGTCAGATATGCACTGGGTGGAATTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCACTAATATGCTTCCTGTCAGATATGCACTGGGTGGAATTTTC  366

seq1  TAGAACTTTGAAATTCAGAGCAATCCACTGGGTTTGTGTGTCTAATTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTTGAAATTCAGAGCAATCCACTGGGTTTGTGTGTCTAATTTTA  416

seq1  GTAAGCCTGATTATTTTGAAAGTCAGGCTTATTGTGCTGTTTTCCTATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCTGATTATTTTGAAAGTCAGGCTTATTGTGCTGTTTTCCTATAT  466

seq1  TTTGGAACACACACTGTGTGTGTGTGTGGGGCGGGGGGGGGGGGGCAGGG  547
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGGAACACACACTGTGTGTGTGTGTGGGGC-GGGGGGGGGGGGCAGGG  515

seq1  TTTATTAACCTATTTAACTCCTGATAGATGTCTGGCTTGTTTCCTGACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAACCTATTTAACTCCTGATAGATGTCTGGCTTGTTTCCTGACAG  565

seq1  TTGCTATGCCATGCATAACCCCATAGCCTGATTACTTTGTTTATTACTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGCCATGCATAACCCCATAGCCTGATTACTTTGTTTATTACTTT  615

seq1  TATGGTTCCAGAGAACAGATCTCCACTTCATTCAGTGATCAGCACAAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCCAGAGAACAGATCTCCACTTCATTCAGTGATCAGCACAAAGA  665

seq1  GAAAACCAGCTCAGAAAATGTTTTAGGGAGCAAGTTCTGGGCAATGAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAGCTCAGAAAATGTTTTAGGGAGCAAGTTCTGGGCAATGAGAG  715

seq1  GAAAAGGAGAATGTGCCAAATGCTTGATGTGCCGCTGACAGCCGCCTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGAATGTGCCAAATGCTTGATGTGCCGCTGACAGCCGCCTTGG  765

seq1  CTTCCTTCTGTGTGTATTTCCTAACCAAGCAAATCATGTCTGGAGTCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTGTGTGTATTTCCTAACCAAGCAAATCATGTCTGGAGTCTCA  815

seq1  GACCTACCAGCAGCCCAGTGTTAACACTGTAGTTGATTTATGGATTACGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACCAGCAGCCCAGTGTTAACACTGTAGTTGATTTATGGATTACGT  865

seq1  GAGTCAATGGTGGATTTGGCCTCCTGCGATGAAGGGTGGGAAGTAACAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATGGTGGATTTGGCCTCCTGCGATGAAGGGTGGGAAGTAACAGG  915

seq1  GATATGCAGCTAATGTTTCCTAGGAACTGACCCCAGGGCTGGCTGCTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGCTAATGTTTCCTAGGAACTGACCCCAGGGCTGGCTGCTTTC  965

seq1  TAGCTATGATGCTCAGGTCTTTACTACTCCTACTTTTACAAAATGTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGATGCTCAGGTCTTTACTACTCCTACTTTTACAAAATGTTTTT  1015

seq1  GTCCTCTGGACCTGTCATGAATGTAGGCCAAGTAGTACCTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGACCTGTCATGAATGTAGGCCAAGTAGTACCTGAATTC  1061