BAC Information

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BAC

Clone NameB6Ng01-160A22
Chromosome16 (Build37)
Map Location 44,104,587 - 44,223,022
singlet/doubletdoublet
Overlap geneAtp6v1a, Nat13, Gm608
Upstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c
Downstream geneSidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160A22.bB6Ng01-160A22.g
ACCDH953538DH953539
length1,1701,065
definitionDH953538|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A22, 5' end.DH953539|Mus musculus domesticus DNA, BAC clone: B6Ng01-160A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,221,835 - 44,223,022)(44,104,587 - 44,105,669)
sequence
gaattcattttcttattataactgttatgaaggacaataatgtaatttac
aatgtcatatttaatataaataatcagcaaatgaaaagactgagacagct
taaaactctactctgaagtatctgaaaggctcaaatgtatcatctaaaca
caacatttactgagcagttctaacatttaagtgattgtaaattaatgtat
ttgaagaccaaataaatagaatgaagagagaatactaaatcaacttaact
gatgaagcactggtcactaactgacaccaggaaaacccacaatacaactg
ctgttattctttggcctaaggcaaaacccaagtactaagtggaaaacatt
tctgtattttgtcttagcttcatatttttaaggctcattgtctaaggaag
acttttgctttacagaatcttggcacattaaaggagaatgtggctcccta
ctttgaagaacatgaaatttaggtagtttattaaaaattataattaagaa
agaagtctctatatcaaagctctggaatgaaggctgaccaaacatttcat
ttattttctatctgtctgatatttttacttatgggatttcaactcattat
caattcattacttgccatggcttagaactgttacgtgttgacatcagcaa
gcacctatgatgaatcaccatttctttcaagttgcttttacttttggatt
tgcaacttagccatctcaactgtctattttataacttctcagcaactgag
tttaagatctcagctcccacctaccacccagcatgtgccaagatctcaac
ttctggctgattagtacttagggaataacgatcacaaatcaagcttggaa
aggcaaatcacttagaagattaaagaaagcacatcactcaggaatgaaag
atgattgctttgacaccccagtgtatgcatcctctctgacacggcttcct
tgtagtcagagctactgaaaatggtatctgatacaaagacacacacccac
attagctctctcagtgcacatgtgtgtacagaagaacagtatcatttcac
ccaaacttcacagtaagttctctggcttaaacagctgactgcagtcatga
cctaaatatgctttggtgggcaggtctgtttgaaggctgcctggaagagt
caaagcgaggaattgctatg
gaattcctgctctcctgcaccagccaccgccagttccacccatcttacaa
agatgaataatggtcccaggtgggtaaatgaaaacaatgcagaaggaagt
acacggtggcgaaagagcctgccaaggaacagacgaaagtgtggtcacag
gcaagtacccagaagaaaagtcaaaccagtgtggaagtgtaggcttcagt
agaggcaatactaggaacggacacatgaaagtctaaataaaacacagcat
aggaaatggtgatcagaagggctctagtatgtctaatggaagaaaaggtt
gcagataaaattctcaagtctttcaaaataaaaaacaaattcagagactg
acacggttcatgtctgagaaagacgtatctaagctatcaacaatgccaaa
tatcctaagaaagctatgagacttaaatttaaagagaaattctccggacc
aagaaaagttacttctacaagggggaaaatcattctcagatttgtgctcc
caatgttgcctgcttgaataagtgttctcaggaaaatatcactgatccaa
gaaatttgttctcagccaaaccactcttgcggtttgggtaggcattcctt
ctgcttcaaaaatgaaaaaagtaagtattactatattaccccagtagatc
ataaatcatgaagtctatgaaagtcaacacatgttagtaaaaactaccag
gctacaaaaactaccaataattttagttcagaaacacaactgttaaaggc
aaagggggaaaaaaaacttggaaacttatgaagaaagcaagagttcaagg
aaatgaagattttgtgagtcttttcttgcagaaacttccaaaggacatag
aataaaccagaaatcagaagctagccacagggaacactggctcatttagg
gaaggccaaagtctaatatactggctctctatttctagataaagtagaga
gtatatttcctaaaaggcaaacgaagtcctagccctgagctgagggagca
agatgaaagtgtgcacacagcacatttcttatctttttatagccctaaaa
tagtacgtcataggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44221835_44223022
seq2: B6Ng01-160A22.b_45_1214 (reverse)

seq1  CATAGCAAACTCCTCTGCCTCTGACTCTTCCAAGCAGCCCTCAAACAGAC  50
      |||||| || |||||   || ||||||||||| |||||| ||||||||||
seq2  CATAGC-AATTCCTC--GCTTTGACTCTTCCAGGCAGCCTTCAAACAGAC  47

seq1  CTGCTCACAACATAAGCCATATTTTAGGTCATGACTGCAGTTCAGCTGTT  100
      |||| ||| |   ||| |||| |||||||||||||||||| |||||||||
seq2  CTGCCCACCA---AAG-CATA-TTTAGGTCATGACTGCAG-TCAGCTGTT  91

seq1  TAAAGCCAGAGAAACTAACTGTGAAGGTTTGGGTTGAAATGATAACTGTT  150
      | ||||||||| |||| |||||||| ||||||| ||||||||| ||||||
seq2  T-AAGCCAGAG-AACTTACTGTGAA-GTTTGGG-TGAAATGAT-ACTGTT  136

seq1  CTTCTGTACACACATGTGCACTGAGAGAGCTTATGTGGGTGTGTGTCTTT  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCTGTACACACATGTGCACTGAGAGAGCTAATGTGGGTGTGTGTCTTT  186

seq1  GTATCAGATAACCATTTTTCAGTAGCTTCTGACTACAAGGAAGCCGTGTC  250
      ||||||||| |||| ||||||||||| |||||||||||||||||||||||
seq2  GTATCAGAT-ACCA-TTTTCAGTAGC-TCTGACTACAAGGAAGCCGTGTC  233

seq1  AGAGAGGATGCATACACTGGGGTTGTCAAAGCAATCATCTTTCATTCCTG  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAGAGGATGCATACACTGGGG-TGTCAAAGCAATCATCTTTCATTCCTG  282

seq1  AGTGATGTGCTTTCTTTAATCTTCTAAGTGATTTGCCTTTCCAAGCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGCTTTCTTTAATCTTCTAAGTGATTTGCCTTTCCAAGCTTGA  332

seq1  TTTGTGATCGTTATTCCCTAAGTACTAATCAGCCAGAAGTTGAGATCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATCGTTATTCCCTAAGTACTAATCAGCCAGAAGTTGAGATCTTG  382

seq1  GCACATGCTGGGTGGTAGGTGGGAGCTGAGATCTTAAACTCAGTTGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTGGGTGGTAGGTGGGAGCTGAGATCTTAAACTCAGTTGCTGA  432

seq1  GAAGTTATAAAATAGACAGTTGAGATGGCTAAGTTGCAAATCCAAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATAAAATAGACAGTTGAGATGGCTAAGTTGCAAATCCAAAAGTA  482

seq1  AAAGCAACTTGAAAGAAATGGTGATTCATCATAGGTGCTTGCTGATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTTGAAAGAAATGGTGATTCATCATAGGTGCTTGCTGATGTCA  532

seq1  ACACGTAACAGTTCTAAGCCATGGCAAGTAATGAATTGATAATGAGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTAACAGTTCTAAGCCATGGCAAGTAATGAATTGATAATGAGTTGA  582

seq1  AATCCCATAAGTAAAAATATCAGACAGATAGAAAATAAATGAAATGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATAAGTAAAAATATCAGACAGATAGAAAATAAATGAAATGTTTG  632

seq1  GTCAGCCTTCATTCCAGAGCTTTGATATAGAGACTTCTTTCTTAATTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTCATTCCAGAGCTTTGATATAGAGACTTCTTTCTTAATTATA  682

seq1  ATTTTTAATAAACTACCTAAATTTCATGTTCTTCAAAGTAGGGAGCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATAAACTACCTAAATTTCATGTTCTTCAAAGTAGGGAGCCACA  732

seq1  TTCTCCTTTAATGTGCCAAGATTCTGTAAAGCAAAAGTCTTCCTTAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTAATGTGCCAAGATTCTGTAAAGCAAAAGTCTTCCTTAGACA  782

seq1  ATGAGCCTTAAAAATATGAAGCTAAGACAAAATACAGAAATGTTTTCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTTAAAAATATGAAGCTAAGACAAAATACAGAAATGTTTTCCAC  832

seq1  TTAGTACTTGGGTTTTGCCTTAGGCCAAAGAATAACAGCAGTTGTATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTTGGGTTTTGCCTTAGGCCAAAGAATAACAGCAGTTGTATTGT  882

seq1  GGGTTTTCCTGGTGTCAGTTAGTGACCAGTGCTTCATCAGTTAAGTTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCCTGGTGTCAGTTAGTGACCAGTGCTTCATCAGTTAAGTTGAT  932

seq1  TTAGTATTCTCTCTTCATTCTATTTATTTGGTCTTCAAATACATTAATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTCTCTCTTCATTCTATTTATTTGGTCTTCAAATACATTAATTT  982

seq1  ACAATCACTTAAATGTTAGAACTGCTCAGTAAATGTTGTGTTTAGATGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACTTAAATGTTAGAACTGCTCAGTAAATGTTGTGTTTAGATGAT  1032

seq1  ACATTTGAGCCTTTCAGATACTTCAGAGTAGAGTTTTAAGCTGTCTCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAGCCTTTCAGATACTTCAGAGTAGAGTTTTAAGCTGTCTCAGT  1082

seq1  CTTTTCATTTGCTGATTATTTATATTAAATATGACATTGTAAATTACATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTTGCTGATTATTTATATTAAATATGACATTGTAAATTACATT  1132

seq1  ATTGTCCTTCATAACAGTTATAATAAGAAAATGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTTCATAACAGTTATAATAAGAAAATGAATTC  1170

seq1: chr16_44104587_44105669
seq2: B6Ng01-160A22.g_68_1132

seq1  GAATTCCTGCTCTCCTGCACCAGCCACCGCCAGTTCCACCCATCTTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCTCCTGCACCAGCCACCGCCAGTTCCACCCATCTTACAA  50

seq1  AGATGAATAATGGTCCCAGGTGGGTAAATGAAAACAATGCAGAAGGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATAATGGTCCCAGGTGGGTAAATGAAAACAATGCAGAAGGAAGT  100

seq1  ACACGGTGGCGAAAGAGCCTGCCAAGGAACAGACGAAAGTGTGGTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTGGCGAAAGAGCCTGCCAAGGAACAGACGAAAGTGTGGTCACAG  150

seq1  GCAAGTACCCAGAAGAAAAGTCAAACCAGTGTGGAAGTGTAGGCTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTACCCAGAAGAAAAGTCAAACCAGTGTGGAAGTGTAGGCTTCAGT  200

seq1  AGAGGCAATACTAGGAACGGACACATGAAAGTCTAAATAAAACACAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAATACTAGGAACGGACACATGAAAGTCTAAATAAAACACAGCAT  250

seq1  AGGAAATGGTGATCAGAAGGGCTCTAGTATGTCTAATGGAAGAAAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGTGATCAGAAGGGCTCTAGTATGTCTAATGGAAGAAAAGGTT  300

seq1  GCAGATAAAATTCTCAAGTCTTTCAAAATAAAAAACAAATTCAGAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAAAATTCTCAAGTCTTTCAAAATAAAAAACAAATTCAGAGACTG  350

seq1  ACACGGTTCATGTCTGAGAAAGACGTATCTAAGCTATCAACAATGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTTCATGTCTGAGAAAGACGTATCTAAGCTATCAACAATGCCAAA  400

seq1  TATCCTAAGAAAGCTATGAGACTTAAATTTAAAGAGAAATTCTCCGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAGAAAGCTATGAGACTTAAATTTAAAGAGAAATTCTCCGGACC  450

seq1  AAGAAAAGTTACTTCTACAAGGGGGAAAATCATTCTCAGATTTGTGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTTACTTCTACAAGGGGGAAAATCATTCTCAGATTTGTGCTCC  500

seq1  CAATGTTGCCTGCTTGAATAAGTGTTCTCAGGAAAATATCACTGATCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGCCTGCTTGAATAAGTGTTCTCAGGAAAATATCACTGATCCAA  550

seq1  GAAATTTGTTCTCAGCCAAACCACTCTTGCGGTTTGGGTAGGCATTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTTCTCAGCCAAACCACTCTTGCGGTTTGGGTAGGCATTCCTT  600

seq1  CTGCTTCAAAAATGAAAAAAGTAAGTATTACTATATTACCCCAGTAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAAAAATGAAAAAAGTAAGTATTACTATATTACCCCAGTAGATC  650

seq1  ATAAATCATGAAGTCTATGAAAGTCAACACATGTTAGTAAAAACTACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATGAAGTCTATGAAAGTCAACACATGTTAGTAAAAACTACCAG  700

seq1  GCTACAAAAACTACCAATAATTTTAGTTCAGAAACACAACTGTTAAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAAAACTACCAATAATTTTAGTTCAGAAACACAACTGTTAAAGGC  750

seq1  AAAGGGGGAAAAAAAACTTGGAAACTTATGAAGAAAGCAAGAGTTCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGAAAAAAAACTTGGAAACTTATGAAGAAAGCAAGAGTTCAAGG  800

seq1  AAAATGAAGATTTTGTGAGTC-TTTCTTGCAGAAACTTCCAAAGGACATA  849
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -AAATGAAGATTTTGTGAGTCTTTTCTTGCAGAAACTTCCAAAGGACATA  849

seq1  GAATAAAACCAGAAATCAAGAAGCTAGCCACAGGGAACACTGGCTCCATT  899
      |||| |||||||||||| ||||||||||||||||||||||||||| ||||
seq2  GAAT-AAACCAGAAATC-AGAAGCTAGCCACAGGGAACACTGGCT-CATT  896

seq1  TAGGGAAGGCCAAAGTCTAAATAATACTGGCTCTCTATTTCTAGAATAAA  949
      ||||||||||||||||||||   ||||||||||||||||||||| |||||
seq2  TAGGGAAGGCCAAAGTCTAA--TATACTGGCTCTCTATTTCTAG-ATAAA  943

seq1  GTAGAGAGTTAATAATTCCTAAAAAAGGCAAAACGAAGGTCCTAAGCACT  999
      |||||||||  ||| |||||  ||||||| ||||||| ||||| ||| ||
seq2  GTAGAGAGT--ATATTTCCT--AAAAGGC-AAACGAA-GTCCT-AGCCCT  986

seq1  GAGGCTGAGGGAGCAAAGATGAAAAGTGTGCAACACAGCACATTTCTTAT  1049
      || ||||||||||| |||||| ||||||||| ||||||||||||||||||
seq2  GA-GCTGAGGGAGC-AAGATG-AAAGTGTGC-ACACAGCACATTTCTTAT  1032

seq1  C-TTTTATAGCCCCTAAAAATAGTACGTCATAGGC  1083
      | |||||||||||   |||||||||||||||||||
seq2  CTTTTTATAGCCC--TAAAATAGTACGTCATAGGC  1065