BAC Information

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BAC

Clone NameB6Ng01-162K16
Chromosome16 (Build37)
Map Location 41,228,129 - 41,318,320
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162K16.bB6Ng01-162K16.g
ACCDH955449DH955450
length1,1301,068
definitionDH955449|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K16, 5' end.DH955450|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,317,170 - 41,318,320)(41,228,129 - 41,229,209)
sequence
gaattcaagtctgtctctgctgctgtctaaatatttctttagtcaaggaa
gaaacatttcctgtaaatcgtttgcataaaagccagcctctgttgccagc
tagaaatgcaggggaaagattaggggtaggacaaaagatgtgggagagaa
gccactctttaacacctgcgtccctccttaagaggtactcttcctactaa
gacaagcacacacaagcaagggctttactttctggagaaacacagaagat
taaaaccagagtaaagagattattaaaatctatcatgttgcacagaaggc
agagtggcgtgagatgacagcaatgagcctgccagtgttgtaaagtgatg
agcattggacttcagtttcaaaaatttaattttctcttgcataaataatg
tgatggctgacacggctcagtcacatttgaaaactcgagatggtgggaag
tattctacagggcttagaagtcatgtcattgttttcaataagacaaatac
taacatctgaaaatggactcttaacagtcatcatagctctagacttatag
accatatataggaattctgatgacggtattttttggacttaaaatactat
catcaacatcaataaaactatctgtctgtgtttctagacttggaaatact
aatgaaagctgttgacatgttttttttttttttttaaagaaacttatttt
cttgaagtttgtgttttttactactaagaaaatcaaaagattctaactaa
actatgcatgacaacagtgtttggaaactcagcgaggatcagacaagtgt
aagcctcttcatgtccacatccaaaattatgttgggctgaataagctaat
gtatatgaaataacttttaaaggaagattagaatagtcatggccagcaag
tacatcattagaagttaaattacagactcagttatagaactgacatcttc
cagtgagacatgatcataggatgaaagaagaaaatgtggctgtgcacaga
ctatacatcacttagatacatagtcatagttccatattgtgctgctgatg
cttctatagtgaaatgggatgccaaatgtgacttacagttggtcaaggta
ctgttataactgtgaccacaaagcaaatgc
gaattcaaatgtaggttaccctagctccagtgaactgtatcataggtctt
taatgacttttccctttgttaatagctttttttttccccatggaggggaa
aaaaaaaaacactgaaaatctcaagaggaaaatgtgcttgcctccaaagc
aatgtttgtttttgtttttggtttttgttttttgtttttttgcttttaaa
aacaatataatacactttgaaaaattattttctgctttccccctatccca
tgaatattgttaacagtatttcttgttgcagcatcttctatgctgtggcc
tgattgacaagcacacattattatatctcacagcctatggacattttatt
gtctctggtaagaatggatgattttaaatgacacagtacactttaaagta
ctcatttataataggtctcaaacaagggacaaatgactgaggtgcctatt
taacatatcaaagccacctctgagctttccctcattcctaactcacctta
gtctgcctcactatcactttctaaatatgagagctctcagctactactcc
atgcctacctgccgccctgcatgcccgcctgcctgcttgtcaggttcttc
accatgatggtcatgagctctattattctctggaaagcagagactcaaat
aagctgcattctgttatgtttccttggtcatactctttttttcatgacaa
cagaaaagtaaccaaatcacaaaactactcagagcacccttgaacaccag
tgtacttttccatagggaactctggtgtaagagagggtaaagcaaatatg
gtggaaattgtattaatcaaagccactgtcagccagtcattgttcttctg
gaaactgttgatagatctataatgtgatcatagatcccagcctttttatc
ataaaccacgagctgaactatccattaagattacagggactcacttgagc
cagtgcatgactggatttactgagagatagagggagttgtagcagaggga
catttaaactgctggaaagcttgaaaagatttagatttaatgatagcttt
tattagcacacctcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41317170_41318320
seq2: B6Ng01-162K16.b_48_1177 (reverse)

seq1  GCATTTGCTTTTTGTGGTCACAGTTTATACAGTTCCTTGACCAACCTGTA  50
      ||||||||  |||||||||||||||   ||||| |||||||||| |||||
seq2  GCATTTGC--TTTGTGGTCACAGTTATAACAGTACCTTGACCAA-CTGTA  47

seq1  ATGTCAACATTTTTGCCATTCCCATTTCACTATTAGAAGCATCAAGGCCA  100
      | ||| |||  |||| || ||||||||||||| |||||||||||    ||
seq2  A-GTC-ACA--TTTGGCA-TCCCATTTCACTA-TAGAAGCATCA---GCA  88

seq1  GCACAATATGGAACTATGAACTATTGTTATTCTAAGTGATGTATAGTCTG  150
      |||||||||||||||||| |||| |||   ||||||||||||||||||||
seq2  GCACAATATGGAACTATG-ACTA-TGT--ATCTAAGTGATGTATAGTCTG  134

seq1  TGCACAGCCACATTTTCTTCTTTTCATCCTATGATTCATTGTCCTCACTG  200
      |||||||||||||||||||| ||||||||||||| ||| ||| |||||||
seq2  TGCACAGCCACATTTTCTTC-TTTCATCCTATGA-TCA-TGT-CTCACTG  180

seq1  GAAGATGTCAGTTCTTATAACTGAGTCTGTAATTTAACTTCTAATGATGT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGATGTCAGTTC-TATAACTGAGTCTGTAATTTAACTTCTAATGATGT  229

seq1  ACTTGCTGGCCATGACTATTCTAATCTTCCTTTAAAAGTTATTTCATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGGCCATGACTATTCTAATCTTCCTTTAAAAGTTATTTCATATA  279

seq1  CATTAGCTTATTCAGCCCAACATAATTTTGGATGTGGACATGAAGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTATTCAGCCCAACATAATTTTGGATGTGGACATGAAGAGGCT  329

seq1  TACACTTGTCTGATCCTCGCTGAGTTTCCAAACACTGTTGTCATGCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGTCTGATCCTCGCTGAGTTTCCAAACACTGTTGTCATGCATAG  379

seq1  TTTAGTTAGAATCTTTTGATTTTCTTAGTAGTAAAAAACACAAACTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAGAATCTTTTGATTTTCTTAGTAGTAAAAAACACAAACTTCAA  429

seq1  GAAAATAAGTTTCTTTAAAAAAAAAAAAAAAACATGTCAACAGCTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGTTTCTTTAAAAAAAAAAAAAAAACATGTCAACAGCTTTCAT  479

seq1  TAGTATTTCCAAGTCTAGAAACACAGACAGATAGTTTTATTGATGTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTCCAAGTCTAGAAACACAGACAGATAGTTTTATTGATGTTGAT  529

seq1  GATAGTATTTTAAGTCCAAAAAATACCGTCATCAGAATTCCTATATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATTTTAAGTCCAAAAAATACCGTCATCAGAATTCCTATATATGG  579

seq1  TCTATAAGTCTAGAGCTATGATGACTGTTAAGAGTCCATTTTCAGATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGTCTAGAGCTATGATGACTGTTAAGAGTCCATTTTCAGATGTT  629

seq1  AGTATTTGTCTTATTGAAAACAATGACATGACTTCTAAGCCCTGTAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTCTTATTGAAAACAATGACATGACTTCTAAGCCCTGTAGAAT  679

seq1  ACTTCCCACCATCTCGAGTTTTCAAATGTGACTGAGCCGTGTCAGCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCACCATCTCGAGTTTTCAAATGTGACTGAGCCGTGTCAGCCATC  729

seq1  ACATTATTTATGCAAGAGAAAATTAAATTTTTGAAACTGAAGTCCAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTATGCAAGAGAAAATTAAATTTTTGAAACTGAAGTCCAATGC  779

seq1  TCATCACTTTACAACACTGGCAGGCTCATTGCTGTCATCTCACGCCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTTTACAACACTGGCAGGCTCATTGCTGTCATCTCACGCCACTC  829

seq1  TGCCTTCTGTGCAACATGATAGATTTTAATAATCTCTTTACTCTGGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGTGCAACATGATAGATTTTAATAATCTCTTTACTCTGGTTTT  879

seq1  AATCTTCTGTGTTTCTCCAGAAAGTAAAGCCCTTGCTTGTGTGTGCTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTGTGTTTCTCCAGAAAGTAAAGCCCTTGCTTGTGTGTGCTTGT  929

seq1  CTTAGTAGGAAGAGTACCTCTTAAGGAGGGACGCAGGTGTTAAAGAGTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAGGAAGAGTACCTCTTAAGGAGGGACGCAGGTGTTAAAGAGTGG  979

seq1  CTTCTCTCCCACATCTTTTGTCCTACCCCTAATCTTTCCCCTGCATTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCCACATCTTTTGTCCTACCCCTAATCTTTCCCCTGCATTTCT  1029

seq1  AGCTGGCAACAGAGGCTGGCTTTTATGCAAACGATTTACAGGAAATGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCAACAGAGGCTGGCTTTTATGCAAACGATTTACAGGAAATGTTT  1079

seq1  CTTCCTTGACTAAAGAAATATTTAGACAGCAGCAGAGACAGACTTGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGACTAAAGAAATATTTAGACAGCAGCAGAGACAGACTTGAATT  1129

seq1  C  1151
      |
seq2  C  1130

seq1: chr16_41228129_41229209
seq2: B6Ng01-162K16.g_68_1135

seq1  GAATTCAAATGTAGGTTACCCTAGCTCCAGTGAACTGTATCATAGGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTAGGTTACCCTAGCTCCAGTGAACTGTATCATAGGTCTT  50

seq1  TAATGACTTTTCCCTTTGTTAATAGCTTTTTTTTTCCCCATGGAGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTTTTCCCTTTGTTAATAGCTTTTTTTTTCCCCATGGAGGGGAA  100

seq1  AAAAAAAAACACTGAAAATCTCAAGAGGAAAATGTGCTTGCCTCCAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACACTGAAAATCTCAAGAGGAAAATGTGCTTGCCTCCAAAGC  150

seq1  AATGTTTGTTTTTGTTTTTGGTTTTTGTTTTTTGTTTTTTTGCTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGTTTTTGTTTTTGGTTTTTGTTTTTTGTTTTTTTGCTTTTAAA  200

seq1  AACAATATAATACACTTTGAAAAATTATTTTCTGCTTTCCCCCTATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATAATACACTTTGAAAAATTATTTTCTGCTTTCCCCCTATCCCA  250

seq1  TGAATATTGTTAACAGTATTTCTTGTTGCAGCATCTTCTATGCTGTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGTTAACAGTATTTCTTGTTGCAGCATCTTCTATGCTGTGGCC  300

seq1  TGATTGACAAGCACACATTATTATATCTCACAGCCTATGGACATTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAAGCACACATTATTATATCTCACAGCCTATGGACATTTTATT  350

seq1  GTCTCTGGTAAGAATGGATGATTTTAAATGACACAGTACACTTTAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGTAAGAATGGATGATTTTAAATGACACAGTACACTTTAAAGTA  400

seq1  CTCATTTATAATAGGTCTCAAACAAGGGACAAATGACTGAGGTGCCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATAATAGGTCTCAAACAAGGGACAAATGACTGAGGTGCCTATT  450

seq1  TAACATATCAAAGCCACCTCTGAGCTTTCCCTCATTCCTAACTCACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATCAAAGCCACCTCTGAGCTTTCCCTCATTCCTAACTCACCTTA  500

seq1  GTCTGCCTCACTATCACTTTCTAAATATGAGAGCTCTCAGCTACTACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTCACTATCACTTTCTAAATATGAGAGCTCTCAGCTACTACTCC  550

seq1  ATGCCTACCTGCCGCCCTGCATGCCCGCCTGCCTGCTTGTCAGGTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTACCTGCCGCCCTGCATGCCCGCCTGCCTGCTTGTCAGGTTCTTC  600

seq1  ACCATGATGGTCATGAGCTCTATTATTCTCTGGAAAGCAGAGACTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATGGTCATGAGCTCTATTATTCTCTGGAAAGCAGAGACTCAAAT  650

seq1  AAGCTGCATTCTGTTATGTTTCCTTGGTCATACTCTTTTTTTCATGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATTCTGTTATGTTTCCTTGGTCATACTCTTTTTTTCATGACAA  700

seq1  CAGAAAAGTAACCAAATCACAAAACTACTCAGAGCACCCTTGAACACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTAACCAAATCACAAAACTACTCAGAGCACCCTTGAACACCAG  750

seq1  TGTACTTTTCCATAGGGAACTCTGGTGTAAGAGAAGGTAAAGCAAATATG  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTACTTTTCCATAGGGAACTCTGGTGTAAGAGAGGGTAAAGCAAATATG  800

seq1  GTGGAAATTGTATTAATCAAAGCCACTGTCAGCCAGTCATTGTTCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTGTATTAATCAAAGCCACTGTCAGCCAGTCATTGTTCTTCTG  850

seq1  GAAACTGTTGATAGATCTATAATGTGATCATAGATCCCAGCCTTTTTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTTGATAGATCTATAATGTGATCATAGATCCCAGCCTTTTTATC  900

seq1  ATAAACCACGAGCTGAACTATCCAATTAAGATTACAGGGACTCACTTGAA  950
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  ATAAACCACGAGCTGAACTATCC-ATTAAGATTACAGGGACTCACTTG-A  948

seq1  GCCAAGTGCATGACTGGATTTACTGAGAGATAGAGGGAGTTTGTAGCAGA  1000
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCC-AGTGCATGACTGGATTTACTGAGAGATAGAGGGAG-TTGTAGCAGA  996

seq1  GGGACCAATTAAACCTGCTTGGAAAGCTGGAAAAGATTTAGATTTAAATT  1050
      |||||  ||| || |||| ||||||||| ||||||||||||||||||  |
seq2  GGGAC--ATTTAAACTGC-TGGAAAGCTTGAAAAGATTTAGATTTAA--T  1041

seq1  GAATTAGCTTTTATTAAGCACACACTCTTCC  1081
      ||  ||||||||||| ||||||| |||||||
seq2  GA--TAGCTTTTATT-AGCACAC-CTCTTCC  1068