BAC Information

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BAC

Clone NameB6Ng01-163C07
Chromosome16 (Build37)
Map Location 32,949,755 - 33,116,645
singlet/doubletdoublet
Overlap geneLrch3, Iqcg, Rpl35a, Lmln
Upstream geneNcbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, EG625660
Downstream geneLOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C07.bB6Ng01-163C07.g
ACCDH955803DH955804
length1,1701,143
definitionDH955803|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C07, 5' end.DH955804|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,115,474 - 33,116,645)(32,949,755 - 32,950,890)
sequence
gaattccaattggtggtagtaggtcttttccttttttctccctcaagatt
tatttctgtgtctctgtgtgtatgtctgcatgccacatgtgtagggttgc
ctacaggggccagagggaggtttggggtcctgtagaattggagttacagg
cagttgtgagccacctgacatgggtgctgggcacgaaactcaggtctgct
gggagagtagaaggcacagtttgagaggagccacatcctctcaaactgtg
agctcggataaaactctactgcattaggttgcttcttatgagggattcag
tcatgacggcaagcaaagtaactaacctttctatgttaaacttctatgct
gaggaccaagtccagggcctcacagccctctaagactgagctatttcccc
tgtgccctggagttactcttaaccaaccactgcagctgtgctgggctgag
gtctacaatacaggcgctgtcctccagcagcttctaagaaaagaatattt
tattaaatctttgagaatttcatacagggcactgtgatcatattcacctc
ctcacccatctcctcttggatcccctatctcttctagtatctctaactga
ggaataagagtgggatacaaatgttttagttgtgtcattcgggaggtgga
gacatgaggtcaggagttcaagaccagcctcagctacatgtcgagtttga
agctgcctgggctgcatgagatcctgtaaaaataaagaaatgtaaccaac
aaactgtttgtgattgagacatgaaaaatcgagaaaataagcttaggata
aacatcaaaaagtttcatagaagaagtgtaattatgtcctggagatagga
caggctttgggtgacaatgaggtagacattataatctgggaaagagaatg
cacaaagaaatgagaaaatgatgtaagagtggtgttcataggaacgaaca
ttcttgggtaaactttgtctttactatatggacttctcagaagcaagaag
aggacagatggtcgatacacaagtagaagctgactagtagtcttcagtga
gctggagagaatggctctaaggtacaagcacctgactgctcttccaaagg
tcctggagtcaattccagcaactacctggtagcttccaagacacctgtaa
tgggactctgatgtccctct
gaattcttaactagtgagccatttctctagccccttaactactattttta
ttgaggctcacattgtgtcattgggaccaaaaaaggctcctgggtgtgtt
ttaacaaagaacggtaactttctttagtagagagttgggcatggttcagt
tggtaaaaagttacttgctggccagccctgacatcctgatctctggctcc
ttcagtggacggagagctgttctctcacccctatgaacacatcatggcct
tctctctccccgtccccccttctctctcatacatgcataggaagatgggt
atctttgtatctgatgacatttggaacttagtgatgcagctttgataaaa
tgagtggccagtgtcttagaatgtgtattactcacaaagaataacaattt
tattttttgtatgtgtggaaagtgaaaaggaaacattttctagcagctgt
ttaaaggtatgtgtttaatgggttactctgccagttaataaatgtttcaa
tgcttatattgaaccagtttccactaggaattctggagaaatcaagtaat
tatgaagcatactaactaatttcagtaaaacaagtttcaaaggatggttt
taagcttttatattttctttcagacctgtcacgaaatcgcctctcagaaa
tccctatggaagcatgtcactttgtttccctggaaagtcttaacctatac
cagaattgtattcggtatatcccagaggctgttctaaacttacaagctct
gacattcctaaatattaggtaagaatgctattcttttgggaaaactggtt
ttatatgacctttaattttctcctctcagtcactaaaatatttgcagata
cttctctgttcacatcagcagtttctgatatgtttcttaggatatagtaa
cttttctccaagtctctcttgtttctctgtttatttttagctttgcataa
ttaataggctctactagctgtaagttatttactttaatcaagtaaatact
aggtctgatggcctgggaaacagcttagctgggggagcattagcctggta
tgacaagaaactggtttcagccaggctatggcggggtcatccctttaatc
tcgcgacttgggggagggagaggcagggagaaatttctgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33115474_33116645
seq2: B6Ng01-163C07.b_45_1214 (reverse)

seq1  AGAGGG-CATCAGA-TCCCATTACAGGTG-CTTGTGAGCTACCATGTCGT  47
      |||||| ||||||| |||||||||||||| ||||  |||||||| || ||
seq2  AGAGGGACATCAGAGTCCCATTACAGGTGTCTTGGAAGCTACCAGGTAGT  50

seq1  TGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCA-GTGCTTGTAA  96
      |||| ||||||||   |||||||| |||||||||||||| |||||||| |
seq2  TGCT-GGAATTGACTCCAGGACCTTTGGAAGAGCAGTCAGGTGCTTGT-A  98

seq1  CCTCTGAGCCA-TCTCTCCAGCCTCACTTGAGACTACTAAGTCAGCTTCT  145
      |||  |||||| ||||||||| ||||||  |||||||| |||||||||||
seq2  CCTTAGAGCCATTCTCTCCAG-CTCACTGAAGACTACT-AGTCAGCTTCT  146

seq1  ACTTGTGTATCGACCAATCTGTCCTC-TCTTGCTTCTGAGAAGTCCATAT  194
      ||||||||||||||| |||||||||| |||||||||||||||||||||| 
seq2  ACTTGTGTATCGACC-ATCTGTCCTCTTCTTGCTTCTGAGAAGTCCATA-  194

seq1  TAGTAAAGACAAAGTTTACCCAAGAATGTTCGTTCCTATGAACACCACTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGACAAAGTTTACCCAAGAATGTTCGTTCCTATGAACACCACTC  244

seq1  TTACATCATTTTTCTCATTTCTTTGTGCATTCTCTTTCCCAGATTATAAA  294
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TTACATCA-TTTTCTCATTTCTTTGTGCATTCTCTTTCCCAGATTAT-AA  292

seq1  TGTCTACCTCATTGTCACCCAAAGCCTGTCCTATCTCCAGGACATAATTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCTCATTGTCACCCAAAGCCTGTCCTATCTCCAGGACATAATTA  342

seq1  CACTTCTTCTATGAAACTTTTTGATGTTTATCCTAAGCTTATTTTCTCGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTCTATGAAACTTTTTGATGTTTATCCTAAGCTTATTTTCTCGA  392

seq1  TTTTTCATGTCTCAATCACAAACAGTTTGTTGGTTACATTTCTTTATTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATGTCTCAATCACAAACAGTTTGTTGGTTACATTTCTTTATTTT  442

seq1  TACAGGATCTCATGCAGCCCAGGCAGCTTCAAACTCGACATGTAGCTGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATCTCATGCAGCCCAGGCAGCTTCAAACTCGACATGTAGCTGAG  492

seq1  GCTGGTCTTGAACTCCTGACCTCATGTCTCCACCTCCCGAATGACACAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTTGAACTCCTGACCTCATGTCTCCACCTCCCGAATGACACAAC  542

seq1  TAAAACATTTGTATCCCACTCTTATTCCTCAGTTAGAGATACTAGAAGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTGTATCCCACTCTTATTCCTCAGTTAGAGATACTAGAAGAG  592

seq1  ATAGGGGATCCAAGAGGAGATGGGTGAGGAGGTGAATATGATCACAGTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGATCCAAGAGGAGATGGGTGAGGAGGTGAATATGATCACAGTGC  642

seq1  CCTGTATGAAATTCTCAAAGATTTAATAAAATATTCTTTTCTTAGAAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGAAATTCTCAAAGATTTAATAAAATATTCTTTTCTTAGAAGCT  692

seq1  GCTGGAGGACAGCGCCTGTATTGTAGACCTCAGCCCAGCACAGCTGCAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGACAGCGCCTGTATTGTAGACCTCAGCCCAGCACAGCTGCAGT  742

seq1  GGTTGGTTAAGAGTAACTCCAGGGCACAGGGGAAATAGCTCAGTCTTAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTAAGAGTAACTCCAGGGCACAGGGGAAATAGCTCAGTCTTAGA  792

seq1  GGGCTGTGAGGCCCTGGACTTGGTCCTCAGCATAGAAGTTTAACATAGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGAGGCCCTGGACTTGGTCCTCAGCATAGAAGTTTAACATAGAA  842

seq1  AGGTTAGTTACTTTGCTTGCCGTCATGACTGAATCCCTCATAAGAAGCAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTTACTTTGCTTGCCGTCATGACTGAATCCCTCATAAGAAGCAA  892

seq1  CCTAATGCAGTAGAGTTTTATCCGAGCTCACAGTTTGAGAGGATGTGGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCAGTAGAGTTTTATCCGAGCTCACAGTTTGAGAGGATGTGGCT  942

seq1  CCTCTCAAACTGTGCCTTCTACTCTCCCAGCAGACCTGAGTTTCGTGCCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAACTGTGCCTTCTACTCTCCCAGCAGACCTGAGTTTCGTGCCC  992

seq1  AGCACCCATGTCAGGTGGCTCACAACTGCCTGTAACTCCAATTCTACAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCATGTCAGGTGGCTCACAACTGCCTGTAACTCCAATTCTACAGG  1042

seq1  ACCCCAAACCTCCCTCTGGCCCCTGTAGGCAACCCTACACATGTGGCATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCTCCCTCTGGCCCCTGTAGGCAACCCTACACATGTGGCATG  1092

seq1  CAGACATACACACAGAGACACAGAAATAAATCTTGAGGGAGAAAAAAGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATACACACAGAGACACAGAAATAAATCTTGAGGGAGAAAAAAGGA  1142

seq1  AAAGACCTACTACCACCAATTGGAATTC  1172
      ||||||||||||||||||||||||||||
seq2  AAAGACCTACTACCACCAATTGGAATTC  1170

seq1: chr16_32949755_32950890
seq2: B6Ng01-163C07.g_67_1209

seq1  GAATTCTTAACTAGTGAGCCATTTCTCTAGCCCCTTAACTACTATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTAGTGAGCCATTTCTCTAGCCCCTTAACTACTATTTTTA  50

seq1  TTGAGGCTCACATTGTGTCATTGGGACCAAAAAAGGCTCCTGGGTGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTCACATTGTGTCATTGGGACCAAAAAAGGCTCCTGGGTGTGTT  100

seq1  TTAACAAAGAACGGTAACTTTCTTTAGTAGAGAGTTGGGCATGGTTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGAACGGTAACTTTCTTTAGTAGAGAGTTGGGCATGGTTCAGT  150

seq1  TGGTAAAAAGTTACTTGCTGGCCAGCCCTGACATCCTGATCTCTGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAAGTTACTTGCTGGCCAGCCCTGACATCCTGATCTCTGGCTCC  200

seq1  TTCAGTGGACGGAGAGCTGTTCTCTCACCCCTATGAACACATCATGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGACGGAGAGCTGTTCTCTCACCCCTATGAACACATCATGGCCT  250

seq1  TCTCTCTCCCCGTCCCCCCTTCTCTCTCATACATGCATAGGAAGATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCCGTCCCCCCTTCTCTCTCATACATGCATAGGAAGATGGGT  300

seq1  ATCTTTGTATCTGATGACATTTGGAACTTAGTGATGCAGCTTTGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTATCTGATGACATTTGGAACTTAGTGATGCAGCTTTGATAAAA  350

seq1  TGAGTGGCCAGTGTCTTAGAATGTGTATTACTCACAAAGAATAACAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCCAGTGTCTTAGAATGTGTATTACTCACAAAGAATAACAATTT  400

seq1  TATTTTTTGTATGTGTGGAAAGTGAAAAGGAAACATTTTCTAGCAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGTATGTGTGGAAAGTGAAAAGGAAACATTTTCTAGCAGCTGT  450

seq1  TTAAAGGTATGTGTTTAATGGGTTACTCTGCCAGTTAATAAATGTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTATGTGTTTAATGGGTTACTCTGCCAGTTAATAAATGTTTCAA  500

seq1  TGCTTATATTGAACCAGTTTCCACTAGGAATTCTGGAGAAATCAAGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATATTGAACCAGTTTCCACTAGGAATTCTGGAGAAATCAAGTAAT  550

seq1  TATGAAGCATACTAACTAATTTCAGTAAAACAAGTTTCAAAGGATGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCATACTAACTAATTTCAGTAAAACAAGTTTCAAAGGATGGTTT  600

seq1  TAAGCTTTTATATTTTCTTTCAGACCTGTCACGAAATCGCCTCTCAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTTATATTTTCTTTCAGACCTGTCACGAAATCGCCTCTCAGAAA  650

seq1  TCCCTATGGAAGCATGTCACTTTGTTTCCCTGGAAAGTCTTAACCTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGGAAGCATGTCACTTTGTTTCCCTGGAAAGTCTTAACCTATAC  700

seq1  CAGAATTGTATTCGGTATATCCCAGAGGCTGTTCTAAACTTACAAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGTATTCGGTATATCCCAGAGGCTGTTCTAAACTTACAAGCTCT  750

seq1  GACATTCCTAAATATTAGGTAAGAATGCTATTCTTTTGGGAAAACTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCTAAATATTAGGTAAGAATGCTATTCTTTTGGGAAAACTGGTT  800

seq1  TTATATGACCTTTAATTTTCTCCTCTCAGTCACTAAAATATTTGCAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGACCTTTAATTTTCTCCTCTCAGTCACTAAAATATTTGCAGATA  850

seq1  CTTCTCTGTTCACATCAGCAGTTTCTGATATG-TTCTTAGGATATAGTAA  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTCTCTGTTCACATCAGCAGTTTCTGATATGTTTCTTAGGATATAGTAA  900

seq1  CTTTTCTCCCAAGTCTCTCTTGTTTCTCTGTTTATTTTTAGCTTTGCATA  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCT-CCAAGTCTCTCTTGTTTCTCTGTTTATTTTTAGCTTTGCATA  949

seq1  ATTAATAGGCTCTACTAGCTGTAAGTTATTTACTTT-ATCAAGTAAATAC  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTAATAGGCTCTACTAGCTGTAAGTTATTTACTTTAATCAAGTAAATAC  999

seq1  TAGGTCTGATGGCCTGGGATACAGCTTAGCTGGTGGAGCATTAGCCTGGT  1048
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TAGGTCTGATGGCCTGGGAAACAGCTTAGCTGGGGGAGCATTAGCCTGGT  1049

seq1  ATGCACAAGACACTGG-TTCAGCCAGGC-ATGGCGGTG-CACGCCTTTAA  1095
      ||| |||||| ||||| ||||||||||| ||||||| | ||  |||||||
seq2  ATG-ACAAGAAACTGGTTTCAGCCAGGCTATGGCGGGGTCATCCCTTTAA  1098

seq1  TCCCAGCACTT--GGGAGGCAGAGGCAGGCAG--ATTTCTGAGAT  1136
      || |   ||||  |||||| ||||||||| ||  |||||||||||
seq2  TCTCGCGACTTGGGGGAGGGAGAGGCAGGGAGAAATTTCTGAGAT  1143