BAC Information

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BAC

Clone NameB6Ng01-166B18
Chromosome16 (Build37)
Map Location 4,517,737 - 4,518,711
singlet/doubletsinglet
Overlap geneSrl
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneTcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166B18.bB6Ng01-166B18.g
ACCDH957975DH957976
length1,0141,192
definitionDH957975|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B18, 5' end.DH957976|Mus musculus domesticus DNA, BAC clone: B6Ng01-166B18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgacatctcagacatcccatttgccatcttgttcttgtcctttt
tttttttttttttttttaaatcagggtctcgtgtaatccagcctctctct
gactcactctgtagcccagagtgaccctgaactcctgtcctggttctcct
ctctttgctggccaagtgctgggattaccagagcatgtcaccatcctcag
ttttatgtgatgcagggaattgaacccaaggccttatgcatgctatgtaa
tcactctgctaactgagccacagccacaacccttccctgtgctcttcaac
ctcttcctttccacaggagccttccctattggctcaaaaatatacccagt
gttaaagtttctctctgtctgcaatgccttctggcttttatccaccctgc
ttaatctttaactccccacatctaaatatgttgcctctatgtgatcacta
aatactcctaaatcccttataatctgccagtgacctctgggttgtcaaaa
tcaacacctcatcgtcttccaggtctctgtgacatttaatccctttgacg
gccccttcctctatgagacatcccttcccttggccaccaggccactctct
ctcctggtattcctttccatctttctgaaactcatttatttattatcttc
ttcctcttcctaatcttcagttccagtgtccttcaaagacgagttcttga
tcttatttttctccctctgcaatggctccctccgtcccagcttgctggtc
tctgtataagtgaactgtgcctctgcatttctaggcctggttttcatcta
gtcctaggctacaatctcatctttcctctagttttgtttatttgtttaaa
acagagaccctctatatagatagcccaggatgaccttgaactcggactcc
ttttccctatgtgttagaattatgagcatgtgccaccatgctcagtctga
tctcagctttctactactctaatcccatccagatgtcccatagtctaagt
actcaaatgactaa
gaattccaggacaatcagggctaatatagagagaccttgtctttaaaaac
tgaaaagaaagaagttattttgtgcttgtgccatagtacacaagttgggt
aggtcagaggatgactttatggagtcagtcagtttcctcctcccacctgt
actatggttccaggattcaaactcagatcttcagacttacacagtatctt
agttagggttgctattgctgtgataaaatactgccttcaaaaacgacctg
ggaggacactcattacatctcacttgtaggtcacatgcatcactaagggg
agtcaggagtgactcagggcagggactatcacagaagccatggagggtgc
tgcttgcttcctggcttgctcttcatggcttgttcagactgctttcttac
accatccaggatgatgtacccagaggaggcaccacccccagttgagttgg
gtcctcccataagaatcactagtcaagagaattacctacaggaaatctga
tgggagacttttctcaaatgaggtagttcttcctatgtaactcttgcttg
tgttgagttgactaaaaacccaaccaggatccatagcaagtacctttatc
tgctgagccatctcaccagcccctctaccctatttcatttatttaagtgg
ggtctcactgtgtagcattggctggtgtcttagttagggttttactgatg
tgaacagacactatgaccaaggcaagtcttataaaggactacatttaatt
ggggctggcttacaggctcagagatttagtccattatcatcaggtgggaa
catggtggcatctaggcaggcatggtgcaagaggagctgagagttctaca
tcttcatctaaaggctgctagcaacagactgactactagcagctaggaca
agggtgttaaagcccagtcccacagtgacacacctactccaataaggcca
cacctccaaatagtgccactcccttgagccaagcatatgcaaaccatcac
agctggtctggggctcactgtgtagaaccactgtacccagcccatccatc
actggctgttctcagtgaacctaaagcttaccaattgcctaaacttggaa
tcttttctggcctccaattcttctggtgccttgaatatcagatgtggccc
tgctgtgcctgggttttcttatgggggcataatggagactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4517737_4518711
seq2: B6Ng01-166B18.b_47_1019

seq1  GAATTCTGACATCTCAGACATCCCATTTGCCATCTTGTTCTTGTCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACATCTCAGACATCCCATTTGCCATCTTGTTCTTGTCCTTTT  50

seq1  TTTTTTTTTTTTTTTTTAAATCAGGGTCTCGTGTAATCCAGCCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTAAATCAGGGTCTCGTGTAATCCAGCCTCTCTCT  100

seq1  GACTCACTCTGTAGCCCAGAGTGACCCTGAACTCCTGTCCTGGTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTCTGTAGCCCAGAGTGACCCTGAACTCCTGTCCTGGTTCTCCT  150

seq1  CTCTTTGCTGGCCAAGTGCTGGGATTACCAGAGCATGTCACCATCCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTGGCCAAGTGCTGGGATTACCAGAGCATGTCACCATCCTCAG  200

seq1  TTTTATGTGATGCAGGGAATTGAACCCAAGGCCTTATGCATGCTATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGATGCAGGGAATTGAACCCAAGGCCTTATGCATGCTATGTAA  250

seq1  TCACTCTGCTAACTGAGCCACAGCCACAACCCTTCCCTGTGCTCTTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGCTAACTGAGCCACAGCCACAACCCTTCCCTGTGCTCTTCAAC  300

seq1  CTCTTCCTTTCCACAGGAGCCTTCCCTATTGGCTCAAAAATATACCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTTCCACAGGAGCCTTCCCTATTGGCTCAAAAATATACCCAGT  350

seq1  GTTAAAGTTTCTCTCTGTCTGCAATGCCTTCTGGCTTTTATCCACCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTTCTCTCTGTCTGCAATGCCTTCTGGCTTTTATCCACCCTGC  400

seq1  TTAATCTTTAACTCCCCACATCTAAATATGTTGCCTCTATGTGATCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTAACTCCCCACATCTAAATATGTTGCCTCTATGTGATCACTA  450

seq1  AATACTCCTAAATCCCTTATAATCTGCCAGTGACCTCTGGGTTGTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCTAAATCCCTTATAATCTGCCAGTGACCTCTGGGTTGTCAAAA  500

seq1  TCAACACCTCATCGTCTTCCAGGTCTCTGTGACATTTAATCCCTTTGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACCTCATCGTCTTCCAGGTCTCTGTGACATTTAATCCCTTTGACG  550

seq1  GCCCCTTCCTCTATGAGACATCCCTTCCCTTGGCCACCAGGCCACTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCCTCTATGAGACATCCCTTCCCTTGGCCACCAGGCCACTCTCT  600

seq1  CTCCTGGTATTCCTTTCCATCTTTCTGAAACTCATTTATTTATTATCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTATTCCTTTCCATCTTTCTGAAACTCATTTATTTATTATCTTC  650

seq1  TTCCTCTTCCTAATCTTCAGTTCCAGTGTCCTTCAAAGACGAGTTCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCCTAATCTTCAGTTCCAGTGTCCTTCAAAGACGAGTTCTTGA  700

seq1  TCTTATTTTTCTCCCTCTGCAATGGCTCCCTCCGTCCCAGCTTGCTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTTCTCCCTCTGCAATGGCTCCCTCCGTCCCAGCTTGCTGGTC  750

seq1  TCTGTATAAGTGAACTGTGCCTCTGCATTTCTAGGCCTGGTTTTCATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAAGTGAACTGTGCCTCTGCATTTCTAGGCCTGGTTTTCATCTA  800

seq1  GTCCTAGGCTACAATCTCATCTTTCCTCTAGTTTTGTTTATTTGTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGGCTACAATCTCATCTTTCCTCTAGTTTTGTTTATTTGTTTAAA  850

seq1  ACAGAGACCCTCTATATAGATAGCCCAGGATGACCTTGAACTCGGACTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCCTCTATATAGATAGCCCAGGATGACCTTGAACTCGGACTCC  900

seq1  TTTTCCCTATGTGTTAGAATTATGAGCATGTGCCACCATGCTCAGTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTATGTGTTAGAATTATGAGCATGTGCCACCATGCTCAGTCTGA  950

seq1  TCTCAGCTTTCTAACTACTTCTAAT  975
      |||||||||||| ||||| ||||||
seq2  TCTCAGCTTTCT-ACTAC-TCTAAT  973