BAC Information

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BAC

Clone NameB6Ng01-166I06
Chromosome16 (Build37)
Map Location 95,024,158 - 95,069,935
singlet/doubletdoublet
Overlap geneKcnj6
Upstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a
Downstream geneLOC666201, Kcnj15, Erg, Ets2, LOC625548, LOC100040997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I06.bB6Ng01-166I06.g
ACCDH958276DH958277
length1,1741,165
definitionDH958276|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I06, 5' end.DH958277|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,024,158 - 95,025,344)(95,068,745 - 95,069,935)
sequence
gaattcaccgagcagcctgggctgtctggccagggagctccaggaaccct
cccatctctagttccccaacactgagattacaagtgttccccaccttgcc
tggcttttaaaaaatgtgtgtgctgggaattgaactcacatccttattca
tgcaaggcagactgagccacctcctggccctctgtcaccatggcaacttc
tgtgactgcatttgtcccctcattttagggtttgtagtcacagatctttg
atgggtaaagttggtagaccaagtcctgccacctgagagcaggggtgtcc
atttggcctgacttgtgttaggtataaagtgcgtgagagacacagagacc
tttcagcctgggattagttggtggacagttgtgtctttttcttatgggga
taatctcagagctaaagtgttctaacatctttgaattttacatgtgtggc
tcccagctcttcttatcaagggtccaccaggagagagttgccagctaatg
aggagagagtaaccacttttgctaggttgacatttttagatgtttgaacc
atctgccgtttcacgggtgcctgggaactccaggcactccaggtgtgcca
gtgtgtcagatgcagcctctttggtttaattgtgtccctcagttcagatt
ccaagccaggcttcttatttcatgtcctttgagacgcctcaaggccaagc
tgagcagataccacatcagacacaggacccgaggtccagggagatcttac
agccgtgactgtgagagacacagctaataagcaggagggttgggactgtg
aagctgatcctggcccagggctttccctagtgatctcgtgattatttctc
agaccatttcaatgtggacagggccactgctagccaggctgggttctgcg
actttgatctctgatggctgcaggttgggaacgagcgtgcaggagtcagt
gagtgccagagattatttgctaataagactgtctgtcaggatacttgtct
ggatccagactttcagctggatatcgatgcatgatacactgttttattat
acccaaatataatatttggtatatcaaatataatacatatactgattatg
atataatattgattaatatgatgatggattttatatgaattgtcaccgga
caaagaataccgagtctcttcctc
gaattcaaaccacagtgggagtacagtaattctgctttactgatggagga
attcacatgattctgaagatacattcatggactcctcctatcacagagga
ggaagtgacgtttatatgttcaagccataaacacctgacgagggcacagg
acgatggcagcaggaggagtgtggttagagggtggttagagggcctggct
gggacatgacggcctcttgtaaaacgaagcacaattcacgaaaagaatcc
gaacttcctctgtgccaggctcccttgtctgggctgtcacaggcagagcc
acagaaggtgctcagtcctaggcaccattttctagaataatcaattacag
agcaactgcttggaggaactgaccgagggccttttcttccctctctgaaa
cccggttcctgtcattagcaggaggaaatgaaatccagcagaggagatga
aatccaattttccacttgttcggctcagtgactgacaggggtctgtggga
cgtgaggcctttctctgaaatggagctctggctaaccgctgttagtctct
caggagagcccatggtgtggtagaactggaacaagcctaaagcagtctgt
ccaggaagaaccatatacctccctcagccatgcagatacaaggcgctctg
aaatccctctgttccccagcccctgtccctacttaaacagtaggtgttcc
cctgattttagaacctgggagtagtggcctgcaggaaagacatctccact
tttgtcaccctcttaaagctgggcacagcctgcttttcttaaggtcaagt
ccaaagtgctgagacataatggcttaaaggaggaagaattactgtggctc
acagtcagagggatacagtccatcacagaaggaaggcaggacagcagagg
gttagagagctgcttgcatctcataaaatagtcagagcagagtgacaggg
aggaaggccagactctaactcaagcctgttcagtgagtcactttctctgt
gagctctacctctaaaggtccatgacatccagatgtcactatcaacagga
tccagtgtcaatcatgtggccctggtgaaagaggctacattcagctaagg
ccatccactaccctgtgtctgtcaataaggtccaacctcaaatggaaaca
tggagggtggtaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_95024158_95025344
seq2: B6Ng01-166I06.b_46_1219

seq1  GAATTCACCGAGCAGCCTGGGCTGTCTGGCCAGGGAGCTCCAGGAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGAGCAGCCTGGGCTGTCTGGCCAGGGAGCTCCAGGAACCCT  50

seq1  CCCATCTCTAGTTCCCCAACACTGAGATTACAAGTGTTCCCCACCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTAGTTCCCCAACACTGAGATTACAAGTGTTCCCCACCTTGCC  100

seq1  TGGCTTTTAAAAAATGTGTGTGCTGGGAATTGAACTCACATCCTTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTAAAAAATGTGTGTGCTGGGAATTGAACTCACATCCTTATTCA  150

seq1  TGCAAGGCAGACTGAGCCACCTCCTGGCCCTCTGTCACCATGGCAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAGACTGAGCCACCTCCTGGCCCTCTGTCACCATGGCAACTTC  200

seq1  TGTGACTGCATTTGTCCCCTCATTTTAGGGTTTGTAGTCACAGATCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGCATTTGTCCCCTCATTTTAGGGTTTGTAGTCACAGATCTTTG  250

seq1  ATGGGTAAAGTTGGTAGACCAAGTCCTGCCACCTGAGAGCAGGGGTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAAAGTTGGTAGACCAAGTCCTGCCACCTGAGAGCAGGGGTGTCC  300

seq1  ATTTGGCCTGACTTGTGTTAGGTATAAAGTGCGTGAGAGACACAGAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCCTGACTTGTGTTAGGTATAAAGTGCGTGAGAGACACAGAGACC  350

seq1  TTTCAGCCTGGGATTAGTTGGTGGACAGTTGTGTCTTTTTCTTATGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCTGGGATTAGTTGGTGGACAGTTGTGTCTTTTTCTTATGGGGA  400

seq1  TAATCTCAGAGCTAAAGTGTTCTAACATCTTTGAATTTTACATGTGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGAGCTAAAGTGTTCTAACATCTTTGAATTTTACATGTGTGGC  450

seq1  TCCCAGCTCTTCTTATCAAGGGTCCACCAGGAGAGAGTTGCCAGCTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCTTCTTATCAAGGGTCCACCAGGAGAGAGTTGCCAGCTAATG  500

seq1  AGGAGAGAGTAACCACTTTTGCTAGGTTGACATTTTTAGATGTTTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGTAACCACTTTTGCTAGGTTGACATTTTTAGATGTTTGAACC  550

seq1  ATCTGCCGTTTCACGGGTGCCTGGGAACTCCAGGCACTCCAGGTGTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCGTTTCACGGGTGCCTGGGAACTCCAGGCACTCCAGGTGTGCCA  600

seq1  GTGTGTCAGATGCAGCCTCTTTGGTTTAATTGTGTCCCTCAGTTCAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAGATGCAGCCTCTTTGGTTTAATTGTGTCCCTCAGTTCAGATT  650

seq1  CCAAGCCAGGCTTCTTATTTCATGTCCTTTGAGACGCCTCAAGGCCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAGGCTTCTTATTTCATGTCCTTTGAGACGCCTCAAGGCCAAGC  700

seq1  TGAGCAGATACCACATCAGACACAGGACCCGAGGTCCAGGGAGATCTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGATACCACATCAGACACAGGACCCGAGGTCCAGGGAGATCTTAC  750

seq1  AGCCGTGACTGTGAGAGACACAGCTAATAAGCAGGAGGGTTGGGACTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGACTGTGAGAGACACAGCTAATAAGCAGGAGGGTTGGGACTGTG  800

seq1  AAGCTGATCCTGGCCCAGGGCTTTCCCTAGTGATCTCGTGATTATTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATCCTGGCCCAGGGCTTTCCCTAGTGATCTCGTGATTATTTCTC  850

seq1  AGACCATTTCAATGTGGACAGGGCCACTGCTAGCCAGGCT-GGTTCTGCG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGACCATTTCAATGTGGACAGGGCCACTGCTAGCCAGGCTGGGTTCTGCG  900

seq1  ACTTTGATCTCTGATGGCTGCAGGGTTGGGAACGAGCGTGCAGGAGTCAG  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTTGATCTCTGATGGCTGCA-GGTTGGGAACGAGCGTGCAGGAGTCAG  949

seq1  TGAGGTGCCAGAGATTATTTGCTAATAAGACTTGTCTGTCAGGATACTTG  999
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGA-GTGCCAGAGATTATTTGCTAATAAGAC-TGTCTGTCAGGATACTTG  997

seq1  TCTGGAATCCAGACTTTCAAGCTTGGATTAATCGATGCATGATACAACTG  1049
      ||||| |||||||||||| ||| |||||  ||||||||||||||| ||||
seq2  TCTGG-ATCCAGACTTTC-AGC-TGGAT--ATCGATGCATGATAC-ACTG  1041

seq1  TTTTATTATACCCAAATATAATATTTGGTATATCAAATATAATACAATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTATTATACCCAAATATAATATTTGGTATATCAAATATAATAC-ATAT  1090

seq1  ACTTGATATATGATATAATA-TGATATAATATGATGATGATTTCTATTAT  1148
      || |||| |||||||||||| |||| |||||||||||||  || || |||
seq2  AC-TGAT-TATGATATAATATTGAT-TAATATGATGATGGATTTTA-TAT  1136

seq1  G-ATTGTCACCGTGAACAAAG-ATCACGAGTTCTCTTCCTC  1187
      | |||||||||  | |||||| ||  |||| ||||||||||
seq2  GAATTGTCACC--GGACAAAGAATACCGAG-TCTCTTCCTC  1174

seq1: chr16_95068745_95069935
seq2: B6Ng01-166I06.g_66_1230 (reverse)

seq1  CATT-CCACCCTCCATGTGTCCATTGGTGGGCTGAGACCATCTACTCTGA  49
      |||| ||||||||||||| ||||||  || | |  |||| | |    |||
seq2  CATTACCACCCTCCATGTTTCCATT--TGAGGTTGGACCTTAT----TGA  44

seq1  CAGACACAGGGGTGATGGGATGCCCTAGACTGAATGTAGCCCTCTTTCAC  99
      |||||||||||   |  ||||| |||   |||||||||| ||||||||||
seq2  CAGACACAGGG--TAGTGGATGGCCTTAGCTGAATGTAG-CCTCTTTCAC  91

seq1  CACAGGCTCACATGATTGAACACTTGGATCCCTGTTGATAGTGCCATCCT  149
        ||||  |||||||||| |||| ||||| ||||||||||||| ||| ||
seq2  --CAGGGCCACATGATTG-ACAC-TGGAT-CCTGTTGATAGTGACAT-CT  135

seq1  GGATGGTCATGGACCCTTTAGGAGGTAGAGCCTCACAGGAGAAAGTGACT  199
      |||| |||||||| |||||| ||||||||| |||||| ||||||||||||
seq2  GGAT-GTCATGGA-CCTTTA-GAGGTAGAG-CTCACA-GAGAAAGTGACT  180

seq1  CACTGGAAACAGGCCTTGGAGTTAGAGTCTGGCCTTCCTCCCTGTCCACT  249
      |||||  |||||||  | ||||||||||||||||||||||||||| ||||
seq2  CACTG--AACAGGC--TTGAGTTAGAGTCTGGCCTTCCTCCCTGT-CACT  225

seq1  CTGCTTCCTGACTA-TTTATGAGATGCAAGCAGCTCTCTAACCCTCTGCT  298
      |||||  ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGCT--CTGACTATTTTATGAGATGCAAGCAGCTCTCTAACCCTCTGCT  273

seq1  GTCCTGCCTTCCTTCTGTGATGGACTGTATCCCCTCTGACTGTGAGCCAC  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCCTGCCTTCCTTCTGTGATGGACTGTAT-CCCTCTGACTGTGAGCCAC  322

seq1  AGTAATTCTTCCTCCTTTAAGCCATTATGTCTCAGCACTTTGGACTTGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCTTCCTCCTTTAAGCCATTATGTCTCAGCACTTTGGACTTGAC  372

seq1  CTTAAGAAAAGCAGGCTGTGCCCAGCTTTAAGAGGGTGACAAAAGTGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAAAGCAGGCTGTGCCCAGCTTTAAGAGGGTGACAAAAGTGGAG  422

seq1  ATGTCTTTCCTGCAGGCCACTACTCCCAGGTTCTAAAATCAGGGGAACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCCTGCAGGCCACTACTCCCAGGTTCTAAAATCAGGGGAACAC  472

seq1  CTACTGTTTAAGTAGGGACAGGGGCTGGGGAACAGAGGGATTTCAGAGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTAAGTAGGGACAGGGGCTGGGGAACAGAGGGATTTCAGAGCG  522

seq1  CCTTGTATCTGCATGGCTGAGGGAGGTATATGGTTCTTCCTGGACAGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATCTGCATGGCTGAGGGAGGTATATGGTTCTTCCTGGACAGACT  572

seq1  GCTTTAGGCTTGTTCCAGTTCTACCACACCATGGGCTCTCCTGAGAGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGCTTGTTCCAGTTCTACCACACCATGGGCTCTCCTGAGAGACT  622

seq1  AACAGCGGTTAGCCAGAGCTCCATTTCAGAGAAAGGCCTCACGTCCCACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGGTTAGCCAGAGCTCCATTTCAGAGAAAGGCCTCACGTCCCACA  672

seq1  GACCCCTGTCAGTCACTGAGCCGAACAAGTGGAAAATTGGATTTCATCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGTCAGTCACTGAGCCGAACAAGTGGAAAATTGGATTTCATCTC  722

seq1  CTCTGCTGGATTTCATTTCCTCCTGCTAATGACAGGAACCGGGTTTCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGGATTTCATTTCCTCCTGCTAATGACAGGAACCGGGTTTCAGA  772

seq1  GAGGGAAGAAAAGGCCCTCGGTCAGTTCCTCCAAGCAGTTGCTCTGTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGAAAAGGCCCTCGGTCAGTTCCTCCAAGCAGTTGCTCTGTAAT  822

seq1  TGATTATTCTAGAAAATGGTGCCTAGGACTGAGCACCTTCTGTGGCTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTCTAGAAAATGGTGCCTAGGACTGAGCACCTTCTGTGGCTCTG  872

seq1  CCTGTGACAGCCCAGACAAGGGAGCCTGGCACAGAGGAAGTTCGGATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACAGCCCAGACAAGGGAGCCTGGCACAGAGGAAGTTCGGATTCT  922

seq1  TTTCGTGAATTGTGCTTCGTTTTACAAGAGGCCGTCATGTCCCAGCCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTGAATTGTGCTTCGTTTTACAAGAGGCCGTCATGTCCCAGCCAGG  972

seq1  CCCTCTAACCACCCTCTAACCACACTCCTCCTGCTGCCATCGTCCTGTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAACCACCCTCTAACCACACTCCTCCTGCTGCCATCGTCCTGTGC  1022

seq1  CCTCGTCAGGTGTTTATGGCTTGAACATATAAACGTCACTTCCTCCTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCAGGTGTTTATGGCTTGAACATATAAACGTCACTTCCTCCTCTG  1072

seq1  TGATAGGAGGAGTCCATGAATGTATCTTCAGAATCATGTGAATTCCTCCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAGGAGTCCATGAATGTATCTTCAGAATCATGTGAATTCCTCCA  1122

seq1  TCAGTAAAGCAGAATTACTGTACTCCCACTGTGGTTTGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAGCAGAATTACTGTACTCCCACTGTGGTTTGAATTC  1165