BAC Information

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BAC

Clone NameB6Ng01-166L01
Chromosome16 (Build37)
Map Location 93,498,089 - 93,607,330
singlet/doubletdoublet
Overlap geneSetd4, LOC670912
Upstream geneClic6, Runx1, EG666023, LOC100040747
Downstream geneCbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L01.bB6Ng01-166L01.g
ACCDH958394DH958395
length1,1501,152
definitionDH958394|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L01, 5' end.DH958395|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,606,172 - 93,607,330)(93,498,089 - 93,499,460)
sequence
gaattcacctcttaggacaccaaagcaaagctattggggtaatctttggg
caggaaacattccttactagcctgtggtatccctttagatacttctaatt
gctttgtcttacctggatgtttgtattgagtgtacagatgtgtacagggc
cttcaggggatgctgctcttctgtgcaccacaatgcacccttttagtccc
tttttaagatgacatgatgccatatgctcgcaaaatgacatttggttcag
tcgtgggaaacagatttcgtcactggttcctaacaccctggctataggga
tctccaggtcaagtttcgtttcctctccattcagtaggttgctattagaa
acaagtggccatttagattaaaataagacattttagttatactgacccca
caggaagacctctctgtgtgtatgaaggtcattgtattaggaatacagta
aaataaaggagacaggtataagatttccatttcaaaatattctactgcct
catatacattgcttgtaaattgccgttcaaagtaagctcctagtcaattg
cttaagaaacctgaataatccaaaaaaaaaaatgctgcccagggtgggat
ggctcagcaagtgagggcaaggaccttggtcacccagcagcctgagttca
atccttggaacccatgtaaccacaggaagcaagaacggtgtatgcgtgtt
ctgattgaacccatgtctgcgtaccatgtgccatgcccagagggcagaag
agggcaccgggcatcagatcccacagactggagtcacacgaggttgtgag
ctgccgaaagtatagtaaaacaccacgtatccacagcaagacaagcttcc
agttctgttcagactcctcttttgtgacctcaggtaaatttattcattct
gtatgatttcctttggcattttaggttttgtgtccatcacagtcaaggca
taaaggatcttgttggtcttgcttgagcaacacccctcagtgtcctcggc
gctcagcagtgtcacatagatgtggtcacaaccttgcatggtctgatacc
tgctcttgtcatccagaaaattagctgttatgggtgcctcttttatatat
cagtgactatagtttgcaatctcataccccaggaactttcttcgttgctg

gaattcctcactaccagagtggtaggtagcaagtgggagttacagtggag
agaacaacacttcaagtatgcgtgtctgactcatgtgtgtccattacagt
tcccgaaaggaaaggttgtaccttaaacctttccgtaatcatccgaagaa
tggtcatgttccccactaatgaggaacagagtacgaagatggtcaggagc
caggagcaaggccgtcaccacttagcatcaacatggggaccctgtatagc
ttaggatgttcaatgctcatgggagatttctctcatgttaaagaatttcg
acttgtcacagacattgtggtcacgtgaccagctaccatggccacccaac
agttacacctcccatcctctgcacaaaatgcaaggagcatacactctgtt
gtttgtggctgtaatgaaagtaccaggaggcagaaattgtaatcaaagtc
tttatggtcagagcctgggctttgacaaggcaggcttagccaccgattct
caacaggccaaataaacatagaacagtgaactgtagagatttactacatg
tggtcaccctgggaagagggaacaaataaagaacttcagtgaccaccgag
tccttcttcagagtaccacacaaggtttctgcttaaacaaagggcaagag
gatacacaactaagcaggctttgccagggtgtggtcctgcccacccctcg
ctcatgattgcctcagtttcagtctctcctgcaaggtggtcagaattgca
tgaagcctcagtctgggagacaagatcccttctccagctgtcaccagagc
cccaatctcttcctcctcccagcacagacccctgaagagattctaatttt
ccgaaactcactgtctaatcatctgatagccaaaggggggggtgggactt
tgaacatccctcaagaagagcatcatccctgatgggatggttacagatac
tgagccaccaggaatctacataaagagagatggcccaaatgtgagaaaga
agtgctgcggatatagtgtgccccagatgggcagctgagagcagaagcaa
aatgggtgctttcactaaagcctaaaggtgagaagtgagccaactgcctc
cagtcacttctgagcaggacaggtgaagaccactgttgggctcaggttcc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93606172_93607330
seq2: B6Ng01-166L01.b_44_1193 (reverse)

seq1  CAGCAACAGAAGAAAGTCCCTGGGGGTATGGAGATTGCAGACCAAATAGT  50
      ||||||| ||||||||| ||| ||||||| ||||||||| ||   |||||
seq2  CAGCAAC-GAAGAAAGTTCCT-GGGGTAT-GAGATTGCAAAC--TATAGT  45

seq1  CACTGATATATAAAAGAGCAAACCATAAACAGCTAAATTATCCTGGATGA  100
      ||||||||||||||||||  | |||| |||||||||  | | ||||||||
seq2  CACTGATATATAAAAGAGGCACCCAT-AACAGCTAA--TTTTCTGGATGA  92

seq1  C-AGAGCAGGTATCCAGACCATGCAAGG-TGTGACCACATCTATGTGACA  148
      | ||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CAAGAGCAGGTAT-CAGACCATGCAAGGTTGTGACCACATCTATGTGACA  141

seq1  CTGCTGAGCGCCGAGGACACTGGAGGGGTGTTTGCTCAAGCAAGACCAAC  198
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTGCTGAGCGCCGAGGACACT-GAGGGGTG-TTGCTCAAGCAAGACCAAC  189

seq1  AAGATCCTTTTATGCCTTGACTGTGATGGACACAAAACCTAAAATGCC-A  247
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  AAGATCC-TTTATGCCTTGACTGTGATGGACACAAAACCTAAAATGCCAA  238

seq1  AGGAAATCATACAGAATGAATAAATTTACCTGAGGTCACAAAAGAGGAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCATACAGAATGAATAAATTTACCTGAGGTCACAAAAGAGGAGT  288

seq1  CTGAACAGAACTGGAAGCTTGTCTTGCTGTGGATACGTGGTGTTTTACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAACTGGAAGCTTGTCTTGCTGTGGATACGTGGTGTTTTACTA  338

seq1  TACTTTCGGCAGCTCACAACCTCGTGTGACTCCAGTCTGTGGGATCTGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCGGCAGCTCACAACCTCGTGTGACTCCAGTCTGTGGGATCTGAT  388

seq1  GCCCGGTGCCCTCTTCTGCCCTCTGGGCATGGCACATGGTACGCAGACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTGCCCTCTTCTGCCCTCTGGGCATGGCACATGGTACGCAGACAT  438

seq1  GGGTTCAATCAGAACACGCATACACCGTTCTTGCTTCCTGTGGTTACATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAATCAGAACACGCATACACCGTTCTTGCTTCCTGTGGTTACATG  488

seq1  GGTTCCAAGGATTGAACTCAGGCTGCTGGGTGACCAAGGTCCTTGCCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAAGGATTGAACTCAGGCTGCTGGGTGACCAAGGTCCTTGCCCTC  538

seq1  ACTTGCTGAGCCATCCCACCCTGGGCAGCATTTTTTTTTTTGGATTATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGAGCCATCCCACCCTGGGCAGCATTTTTTTTTTTGGATTATTC  588

seq1  AGGTTTCTTAAGCAATTGACTAGGAGCTTACTTTGAACGGCAATTTACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTAAGCAATTGACTAGGAGCTTACTTTGAACGGCAATTTACAA  638

seq1  GCAATGTATATGAGGCAGTAGAATATTTTGAAATGGAAATCTTATACCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTATATGAGGCAGTAGAATATTTTGAAATGGAAATCTTATACCTG  688

seq1  TCTCCTTTATTTTACTGTATTCCTAATACAATGACCTTCATACACACAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTATTTTACTGTATTCCTAATACAATGACCTTCATACACACAGA  738

seq1  GAGGTCTTCCTGTGGGGTCAGTATAACTAAAATGTCTTATTTTAATCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTCCTGTGGGGTCAGTATAACTAAAATGTCTTATTTTAATCTAA  788

seq1  ATGGCCACTTGTTTCTAATAGCAACCTACTGAATGGAGAGGAAACGAAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACTTGTTTCTAATAGCAACCTACTGAATGGAGAGGAAACGAAAC  838

seq1  TTGACCTGGAGATCCCTATAGCCAGGGTGTTAGGAACCAGTGACGAAATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGGAGATCCCTATAGCCAGGGTGTTAGGAACCAGTGACGAAATC  888

seq1  TGTTTCCCACGACTGAACCAAATGTCATTTTGCGAGCATATGGCATCATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCACGACTGAACCAAATGTCATTTTGCGAGCATATGGCATCATG  938

seq1  TCATCTTAAAAAGGGACTAAAAGGGTGCATTGTGGTGCACAGAAGAGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAAAAAGGGACTAAAAGGGTGCATTGTGGTGCACAGAAGAGCAG  988

seq1  CATCCCCTGAAGGCCCTGTACACATCTGTACACTCAATACAAACATCCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGAAGGCCCTGTACACATCTGTACACTCAATACAAACATCCAG  1038

seq1  GTAAGACAAAGCAATTAGAAGTATCTAAAGGGATACCACAGGCTAGTAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAAAGCAATTAGAAGTATCTAAAGGGATACCACAGGCTAGTAAG  1088

seq1  GAATGTTTCCTGCCCAAAGATTACCCCAATAGCTTTGCTTTGGTGTCCTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTCCTGCCCAAAGATTACCCCAATAGCTTTGCTTTGGTGTCCTA  1138

seq1  AGAGGTGAATTC  1159
      ||||||||||||
seq2  AGAGGTGAATTC  1150

seq1: chr16_93498089_93499460
seq2: B6Ng01-166L01.g_68_1219

seq1  GAATTCCTCACTACCAGAGTGGTAGGTAGCAAGTGGGAGTTACAGTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTACCAGAGTGGTAGGTAGCAAGTGGGAGTTACAGTGGAG  50

seq1  AGAACAACACTTCAAGTATGCGTGTCTGACTCATGTGTGTCCATTACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACACTTCAAGTATGCGTGTCTGACTCATGTGTGTCCATTACAGT  100

seq1  TCCCGAAAGGAAAGGTTGTACCTTAAACCTTTCCGTAATCATCCGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAAGGAAAGGTTGTACCTTAAACCTTTCCGTAATCATCCGAAGAA  150

seq1  TGGTCATGTTCCCCACTAATGAGGAACAGAGTACGAAGATGGTCAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGTTCCCCACTAATGAGGAACAGAGTACGAAGATGGTCAGGAGC  200

seq1  CAGGAGCAAGGCCGTCACCACTTAGCATCAACATGGGGACCCTGTATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAAGGCCGTCACCACTTAGCATCAACATGGGGACCCTGTATAGC  250

seq1  TTAGGATGTTCAATGCTCATGGGAGATTTCTCTCATGTTAAAGAATTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGTTCAATGCTCATGGGAGATTTCTCTCATGTTAAAGAATTTCG  300

seq1  ACTTGTCACAGACATTGTGGTCACGTGACCAGCTACCATGGCCACCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCACAGACATTGTGGTCACGTGACCAGCTACCATGGCCACCCAAC  350

seq1  AGTTACACCTCCCATCCTCTGCACAAAATGCAAGGAGCATACACTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACCTCCCATCCTCTGCACAAAATGCAAGGAGCATACACTCTGTT  400

seq1  GTTTGTGGCTGTAATGAAAGTACCAGGAGGCAGAAATTGTAATCAAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGCTGTAATGAAAGTACCAGGAGGCAGAAATTGTAATCAAAGTC  450

seq1  TTTATGGTCAGAGCCTGGGCTTTGACAAGGCAGGCTTAGCCACCGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCAGAGCCTGGGCTTTGACAAGGCAGGCTTAGCCACCGATTCT  500

seq1  CAACAGGCCAAATAAACATAGAACAGTGAACTGTAGAGATTTACTACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCCAAATAAACATAGAACAGTGAACTGTAGAGATTTACTACATG  550

seq1  TGGTCACCCTGGGAAGAGGGAACAAATAAAGAACTTCAGTGACCACCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCCTGGGAAGAGGGAACAAATAAAGAACTTCAGTGACCACCGAG  600

seq1  TCCTTCTTCAGAGTACCACACAAGGTTTCTGCTTAAACAAAGGGCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCAGAGTACCACACAAGGTTTCTGCTTAAACAAAGGGCAAGAG  650

seq1  GATACACAACTAAGCAGGCTTTGCCAGGGTGTGGTCCTGCCCACCCCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAACTAAGCAGGCTTTGCCAGGGTGTGGTCCTGCCCACCCCTCG  700

seq1  CTCATGATTGCCTCAGTTTCAGTCTCTCCTGCAAGGTGGTCAGAATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATTGCCTCAGTTTCAGTCTCTCCTGCAAGGTGGTCAGAATTGCA  750

seq1  TGAAGCCTCAGTCTGGGAGACAAGATCCCTTCTCCAGCTGTCACCAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTCAGTCTGGGAGACAAGATCCCTTCTCCAGCTGTCACCAGAGC  800

seq1  CCCAATCTCTTCCTCCTCCCAGCACAGACCCCTGAAGAGATTCTAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTCTTCCTCCTCCCAGCACAGACCCCTGAAGAGATTCTAATTTT  850

seq1  CCGAAACTCACTGTCTAATCATCTGATAGCCAAA-GGGGGGGTGGGACTT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCGAAACTCACTGTCTAATCATCTGATAGCCAAAGGGGGGGGTGGGACTT  900

seq1  TGAACATCCCTCAAGAAGAGCATCATCCCTGATGGGATGGTTACAAGATA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAACATCCCTCAAGAAGAGCATCATCCCTGATGGGATGGTTAC-AGATA  949

seq1  CTGAGCCACCAGGAATCTACATAAAGAGAAGATGGCCCAAATGTGGAGAA  999
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  CTGAGCCACCAGGAATCTACATAAAGAG-AGATGGCCCAAATGT-GAGAA  997

seq1  AGAAGTGCCTGCGGATATAGGTGTGGCCCCAAGATGGGCAGGCTGAGAGC  1049
      ||||||| ||||||||||| |||||  ||| ||||||||| |||||||| 
seq2  AGAAGTG-CTGCGGATATA-GTGTG--CCCCAGATGGGCA-GCTGAGAG-  1041

seq1  CAGAAGCCAAAAATGGGTTGCCTTTCACTAAAGGCCCCTAAGGGGTTGAG  1099
      |||||||  |||||||||   ||||||||||||   ||||| ||  ||||
seq2  CAGAAGC--AAAATGGGT--GCTTTCACTAAAG---CCTAAAGG--TGAG  1082

seq1  GAAAGTGAAGCACACTG-CTCCAGTCACCTTCTGAAGCCAGGACCAGGTG  1148
        ||||| |||  |||| ||||||||| |||||||   ||||| ||||||
seq2  --AAGTG-AGCCAACTGCCTCCAGTCA-CTTCTGA--GCAGGA-CAGGTG  1125

seq1  AAAGACCACCTGTTGTGGCTTCTAGGGGGCTCC-ACAGAGAAGGCGGGGC  1197
       ||||||| |||||| ||||       || ||| |               
seq2  -AAGACCA-CTGTTG-GGCT-----CAGGTTCCAA---------------  1152

seq1  TTTTAAAGGAAGCATCTGTGAGCTCTGAGGGGAAACACCTACCCCTCCTA  1247
                                                        
seq2  --------------------------------------------------  1152

seq1  GAGACTAGATGATACCTCAGAAATTCATCCCAGCAGTTTCTGGAGCACCA  1297
                                                        
seq2  --------------------------------------------------  1152

seq1  GAGAATAAAACAGCCCCACTAAACAGTGACTAAGCATATCAAAAATGAGA  1347
                                                        
seq2  --------------------------------------------------  1152

seq1  ATGGATTCTGACATCAAGGTTCCAA  1372
                               
seq2  -------------------------  1152