BAC Information

Click to search

BAC

Clone NameB6Ng01-167P09
Chromosome16 (Build37)
Map Location 30,884,657 - 31,130,844
singlet/doubletdoublet
Overlap geneAI480653, Centb2
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream genePpp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167P09.bB6Ng01-167P09.g
ACCDH959325DH959326
length1,2091,191
definitionDH959325|Mus musculus domesticus DNA, BAC clone: B6Ng01-167P09, 5' end.DH959326|Mus musculus domesticus DNA, BAC clone: B6Ng01-167P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,884,657 - 30,885,884)(31,129,640 - 31,130,844)
sequence
gaattctatcgtgtcttagacaccctgcctcccaggcttcagagtctact
gctttgggtgtgaatcatgaagctggaatggatcatttcccaggagcaaa
tgacatgctcagagtgcatcaaggcagagaagacaaaacatgtgtccagg
agtagacccagacccatcctgtcccctgagtaagtcattccaggagtcta
tccatctcccctgggcttccagcagaacatcctcttcggatctcattcct
ccctgaagctcctacccaacctcccaaccccacgaatccatccctcagag
catcaggaatgcacagatacccagggatacttctctgcatcagacacagc
ctgcagcacctggaaactaatgagtcaggctccatcccagacttgtcacc
ctagttttcaaaggactaatttgtgtatgaagccagagaggttcattcta
aggggcatgtggtctatcctataactgctctattcagtgatgtgtctccc
cagtcagactgtgagctcttgaagggtaggacccatggttcattcctggt
ttggggcaaaagaactgctcagtcagcacagggtgatgagtgacccgagt
ctgtatttcttagagacaatgaacttgacagcaacccaagaattggtgaa
tataaaaccattatggatttgagaaatctctctcctctcacccagtaaaa
aaccagtctagtttggaaaggaaggatgtgacatgaaaactatcctgggg
ctggagatagaaagatacagaagggaaagaaacggctgttgaggaattgc
aaaatatggttaaatatgaatgtctggggagaggtctgtgaacacatttc
ccctcctcccagatcagttctttagctcaaacatgagctgctggccagga
accctgagctcagggaaagagcacagtgcttaataacatgtcttagcaca
ggtccgaaacccagctccttatgcacttgctgtgtgatcttggttaagtc
ccaaccgtctcagcattccttattgtgggacatgggctattcacagacag
ctgtctcagtagagcttgagtgtgactcggagaaacccgtatgatcattc
acctacatgacgaaagacgttccctcaattctctgatcctggcttctgtg
aggttactggttccaagttcccccaaagaagagatgtcaagacaagtccc
aagcttctg
gaattcaatagtacatttatattcctttttctcgcaggagttgagtttgt
catgtcccgagcatagcctattagtactttatcttagatagactgaggta
tatctgtgctgtaatcgatcataaaaggcaaattagggattggatacagt
cataaaactcctgggggctgtgagaaatctgccttcttgataataaggaa
tccaagcatctttgattacagactgtccagattggatctgacacagaaga
tgtgaatggaaaaaatgaaagcaaagtcagttgcaattgtaagaaaaaca
taattaatggattattcacgttcaaagagagtagcatttagaaaaggaaa
gagttttctcttaggccatctttaaatcagttacttttagttattatagg
atgaagccagtgtcatgttttcttttgtttaaagaggcgatttttcaagc
caggtggtggtagcacatgtcattaatcccagcattcaggaagcagaggc
aggcagatctctgagttcaaggccagcctggtctacagagggagttccag
tatatctagggatacacagagagaccctgtctcaaacatacaagaacatg
acctttctgtattgcccagcctagctttaagggcatggccctttcactcc
ttcctcctgtgtgtctgggattacaggcctgggccaccaccccagcttca
ggtcctaatgactctttctcctgctgtccctctctcttcccaagagtctt
gctttgtgtctcagatgggccttgaactcatgatctgtctgccccagcct
cctgagttccggggttacagctgtgactaccttgtctggctcttgttctt
agagtatacaacatgttattttgatgactagcttgttttaatggcattac
tgtgaagtgattatttaagtggattcaataacttttttagtaaatgacaa
atatgtttatagaaatataacaattgttgggttaaattgacatatatatt
tagcttcaaactgctaatttctcaaatctgaagatattgactttaaacaa
cacactactgttttctttaagaaaataatgcagtttacttcatgtggaat
acttcctgtcttaatggcttgcacaggctggcattcgtaagaaaaaaaaa
actagtccactaaggtaaggacaaacctttgacattacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30884657_30885884
seq2: B6Ng01-167P09.b_46_1254

seq1  GAATTCTATCGTGTCTTAGACACCCTGCCTCCCAGGCTTCAGAGTCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGTGTCTTAGACACCCTGCCTCCCAGGCTTCAGAGTCTACT  50

seq1  GCTTTGGGTGTGAATCATGAAGCTGGAATGGATCATTTCCCAGGAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGTGTGAATCATGAAGCTGGAATGGATCATTTCCCAGGAGCAAA  100

seq1  TGACATGCTCAGAGTGCATCAAGGCAGAGAAGACAAAACATGTGTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCTCAGAGTGCATCAAGGCAGAGAAGACAAAACATGTGTCCAGG  150

seq1  AGTAGACCCAGACCCATCCTGTCCCCTGAGTAAGTCATTCCAGGAGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCCAGACCCATCCTGTCCCCTGAGTAAGTCATTCCAGGAGTCTA  200

seq1  TCCATCTCCCCTGGGCTTCCAGCAGAACATCCTCTTCGGATCTCATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCCCTGGGCTTCCAGCAGAACATCCTCTTCGGATCTCATTCCT  250

seq1  CCCTGAAGCTCCTACCCAACCTCCCAACCCCACGAATCCATCCCTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGCTCCTACCCAACCTCCCAACCCCACGAATCCATCCCTCAGAG  300

seq1  CATCAGGAATGCACAGATACCCAGGGATACTTCTCTGCATCAGACACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAATGCACAGATACCCAGGGATACTTCTCTGCATCAGACACAGC  350

seq1  CTGCAGCACCTGGAAACTAATGAGTCAGGCTCCATCCCAGACTTGTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACCTGGAAACTAATGAGTCAGGCTCCATCCCAGACTTGTCACC  400

seq1  CTAGTTTTCAAAGGACTAATTTGTGTATGAAGCCAGAGAGGTTCATTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTCAAAGGACTAATTTGTGTATGAAGCCAGAGAGGTTCATTCTA  450

seq1  AGGGGCATGTGGTCTATCCTATAACTGCTCTATTCAGTGATGTGTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATGTGGTCTATCCTATAACTGCTCTATTCAGTGATGTGTCTCCC  500

seq1  CAGTCAGACTGTGAGCTCTTGAAGGGTAGGACCCATGGTTCATTCCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGACTGTGAGCTCTTGAAGGGTAGGACCCATGGTTCATTCCTGGT  550

seq1  TTGGGGCAAAAGAACTGCTCAGTCAGCACAGGGTGATGAGTGACCCGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAAAAGAACTGCTCAGTCAGCACAGGGTGATGAGTGACCCGAGT  600

seq1  CTGTATTTCTTAGAGACAATGAACTTGACAGCAACCCAAGAATTGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCTTAGAGACAATGAACTTGACAGCAACCCAAGAATTGGTGAA  650

seq1  TATAAAACCATTATGGATTTGAGAAATCTCTCTCCTCTCACCCAGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACCATTATGGATTTGAGAAATCTCTCTCCTCTCACCCAGTAAAA  700

seq1  AACCAGTCTAG-TTGGAAAGGAAGGATGTGACATGAAAACTATCCTGGGG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCTAGTTTGGAAAGGAAGGATGTGACATGAAAACTATCCTGGGG  750

seq1  CTGGAGATAGAAAGATACAGAAGGGAAAGAAACGGCTGTTGAGGAATTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATAGAAAGATACAGAAGGGAAAGAAACGGCTGTTGAGGAATTGC  800

seq1  AAAATATGGTTAAATATGAATGTCTGGGGAGAGGTCTGTGAACACATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGGTTAAATATGAATGTCTGGGGAGAGGTCTGTGAACACATTTC  850

seq1  CCCTCCTCCCAGATCAGTTCTTTAGCTCAAACATGAGCTGCTGGCCAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCCAGATCAGTTCTTTAGCTCAAACATGAGCTGCTGGCCAGGA  900

seq1  ACCCTGAGGCTCAGGGAAAGAGCACAGTGCTTAATAACATGTCTTAGCAC  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGA-GCTCAGGGAAAGAGCACAGTGCTTAATAACATGTCTTAGCAC  949

seq1  AGGGTCCGAAACCCAGCTCCTTATGCACTTGCTGTGTGATCTTGGTTAAG  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GGTCCGAAACCCAGCTCCTTATGCACTTGCTGTGTGATCTTGGTTAAG  998

seq1  TCCCAACCGTCTCAGGCATTCCTTATTGTGGGACAATGGGCTATTCACAG  1049
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TCCCAACCGTCTCA-GCATTCCTTATTGTGGGAC-ATGGGCTATTCACAG  1046

seq1  ACAGGCTGGTCTCCAGTAGAGC-TGAGGTTGTGAACCTCGGAGAAACCCA  1098
      ||| ||| |||| ||||||||| ||||  |||||  ||||||||||||| 
seq2  ACA-GCT-GTCT-CAGTAGAGCTTGAG--TGTGA--CTCGGAGAAACCC-  1088

seq1  GTGATGATCATTCACCTACATGGGACAGAAGACGTTCCCTCATGTCTCCT  1148
      || ||||||||||||||||||  |||  ||||||||||||||  ||| ||
seq2  GT-ATGATCATTCACCTACAT--GACGAAAGACGTTCCCTCAATTCT-CT  1134

seq1  GGAACCCTGGCTCCTGTTGAAGTTACTGTCTCCACAGTCCCCACAAGAGA  1198
      |  | ||||||| ||| ||| |||||||  ||||   |||||  ||||  
seq2  G--ATCCTGGCTTCTG-TGAGGTTACTGGTTCCAAGTTCCCCCAAAGAAG  1181

seq1  AGTAGTCACAGACAATGTCCCAAGCTTCTG  1228
      ||  |||| |||||| ||||||||||||||
seq2  AGATGTCA-AGACAA-GTCCCAAGCTTCTG  1209

seq1: chr16_31129640_31130844
seq2: B6Ng01-167P09.g_68_1258 (reverse)

seq1  AATGT-ATGTCAAAAGTTTTGTCCCTTAACTTTTAGTTGACTAGATTTTT  49
      ||||| ||||| |||| ||||| ||||| |  ||||| ||||||  ||||
seq2  AATGTAATGTC-AAAGGTTTGT-CCTTACC--TTAGTGGACTAG--TTTT  44

seq1  TTTTTTCTTACCTGTAATG-CAGCCTGTGTCAGCATTTAGGGACAGAGAA  98
      |||||||||||    |||| |||||||||  |||  |||  ||||| |||
seq2  TTTTTTCTTAC---GAATGCCAGCCTGTGCAAGCCATTA-AGACAG-GAA  89

seq1  GTATT-CACAATGAGTAAAAACTGCATTATTTTCTTAAAGAAAAACAGTT  147
      ||||| ||||   |||  |||||||||||||||||||||| |||||||| 
seq2  GTATTCCACATGAAGT--AAACTGCATTATTTTCTTAAAG-AAAACAGTA  136

seq1  GTGTGTTGTTTAAAGTCAAATAATCTCAGATTTGAGAAATTAGCAGTTTG  197
      ||||||||||||||||| ||||   |||||||||||||||||||||||||
seq2  GTGTGTTGTTTAAAGTC-AATATCTTCAGATTTGAGAAATTAGCAGTTTG  185

seq1  AGGCTAAATATATATGTTCAATTTAA-CCAACAATTGTTATATTTCTATA  246
      | |||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  AAGCTAAATATATATG-TCAATTTAACCCAACAATTGTTATATTTCTATA  234

seq1  AACATAATTTGTCATTTTACTAAAAAAGTTATTGAATCCACTTAAATAAT  296
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  AACAT-ATTTGTCA-TTTACTAAAAAAGTTATTGAATCCACTTAAATAAT  282

seq1  CACTTCACAGTAATGCCATTAAAACAAGCTAGTCATCAAAATAACATGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACAGTAATGCCATTAAAACAAGCTAGTCATCAAAATAACATGTT  332

seq1  GTATACTCTAAGAACAAGAGCCAGACAAGGTAGTCACAGCTGTAACCCCG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTCTAAGAACAAGAGCCAGACAAGGTAGTCACAGCTGTAACCCCG  382

seq1  GAACTCAGGAGGCTGGGGCAGACAGATCATGAGTTCAAGGCCCATCTGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGAGGCTGGGGCAGACAGATCATGAGTTCAAGGCCCATCTGAG  432

seq1  ACACAAAGCAAGACTCTTGGGAAGAGAGAGGGACAGCAGGAGAAAGAGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCAAGACTCTTGGGAAGAGAGAGGGACAGCAGGAGAAAGAGTC  482

seq1  ATTAGGACCTGAAGCTGGGGTGGTGGCCCAGGCCTGTAATCCCAGACACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGACCTGAAGCTGGGGTGGTGGCCCAGGCCTGTAATCCCAGACACA  532

seq1  CAGGAGGAAGGAGTGAAAGGGCCATGCCCTTAAAGCTAGGCTGGGCAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAAGGAGTGAAAGGGCCATGCCCTTAAAGCTAGGCTGGGCAATA  582

seq1  CAGAAAGGTCATGTTCTTGTATGTTTGAGACAGGGTCTCTCTGTGTATCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTCATGTTCTTGTATGTTTGAGACAGGGTCTCTCTGTGTATCC  632

seq1  CTAGATATACTGGAACTCCCTCTGTAGACCAGGCTGGCCTTGAACTCAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATACTGGAACTCCCTCTGTAGACCAGGCTGGCCTTGAACTCAGA  682

seq1  GATCTGCCTGCCTCTGCTTCCTGAATGCTGGGATTAATGACATGTGCTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTGCCTCTGCTTCCTGAATGCTGGGATTAATGACATGTGCTAC  732

seq1  CACCACCTGGCTTGAAAAATCGCCTCTTTAAACAAAAGAAAACATGACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTGGCTTGAAAAATCGCCTCTTTAAACAAAAGAAAACATGACAC  782

seq1  TGGCTTCATCCTATAATAACTAAAAGTAACTGATTTAAAGATGGCCTAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCATCCTATAATAACTAAAAGTAACTGATTTAAAGATGGCCTAAG  832

seq1  AGAAAACTCTTTCCTTTTCTAAATGCTACTCTCTTTGAACGTGAATAATC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTCTTTCCTTTTCTAAATGCTACTCTCTTTGAACGTGAATAATC  882

seq1  CATTAATTATGTTTTTCTTACAATTGCAACTGACTTTGCTTTCATTTTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTATGTTTTTCTTACAATTGCAACTGACTTTGCTTTCATTTTTT  932

seq1  CCATTCACATCTTCTGTGTCAGATCCAATCTGGACAGTCTGTAATCAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACATCTTCTGTGTCAGATCCAATCTGGACAGTCTGTAATCAAAG  982

seq1  ATGCTTGGATTCCTTATTATCAAGAAGGCAGATTTCTCACAGCCCCCAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGATTCCTTATTATCAAGAAGGCAGATTTCTCACAGCCCCCAGG  1032

seq1  AGTTTTATGACTGTATCCAATCCCTAATTTGCCTTTTATGATCGATTACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGACTGTATCCAATCCCTAATTTGCCTTTTATGATCGATTACA  1082

seq1  GCACAGATATACCTCAGTCTATCTAAGATAAAGTACTAATAGGCTATGCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGATATACCTCAGTCTATCTAAGATAAAGTACTAATAGGCTATGCT  1132

seq1  CGGGACATGACAAACTCAACTCCTGCGAGAAAAAGGAATATAAATGTACT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACATGACAAACTCAACTCCTGCGAGAAAAAGGAATATAAATGTACT  1182

seq1  ATTGAATTC  1205
      |||||||||
seq2  ATTGAATTC  1191