BAC Information

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BAC

Clone NameB6Ng01-168J06
Chromosome16 (Build37)
Map Location 29,844,008 - 30,009,529
singlet/doubletdoublet
Overlap geneGm1968, LOC100043102
Upstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream gene9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168J06.bB6Ng01-168J06.g
ACCDH959781DH959782
length9651,052
definitionDH959781|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J06, 5' end.DH959782|Mus musculus domesticus DNA, BAC clone: B6Ng01-168J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,008,568 - 30,009,529)(29,844,008 - 29,845,073)
sequence
gaattcagactagtttggattacagataccccctcccccccccccccccc
ggtctaaaaaaagcaaagaacgcacaaggaacacagggtgtgtaggtatc
cgccgtggtgatgtatcccccacccctctgtcccccctcaatggacaagc
atcggagcctctgctgctgtacgcctaggtagccaagggttaaccggcgt
ccccctcccccctccgcccccgccgggctgggcaaggcgggaaggcggcg
cgccgggtgccaaagtcggaacctgctctcggcagctccccgcgctgcct
tgactcaccgccaggcctggcgcggccgccggctgtggaatgtgtgagcg
ccatgtgtcaccgccccagactgtgggaaaacgctgctccgctcacctcc
cagcagctggcccgcgcccgcccgcccgggagccgggaaacaggagccgc
ccgcctgggaggccgcccggggccacttccgagcgcgcgccgcctctccg
cccacacgccggtccctgccggcgacccggggctgcggcgccacccgcag
cgagtggcccagcacgcccttcttttgcccccgctggccttatgcatcct
cctgctccaccaggccggccttagacacagagagcccctgttctgagagc
tcctgggcggtgacctctttccgggaaagggccagagaactgagggctat
gcaggggactgacctcatggggttgtgtgacagctccagtctggaccttg
ccagccctgaacaggaggttccactctgcctgacccttcccccggagagc
taggcagagccctgcaccttcaatgcgggggcagtctcctcttctagtca
tttgattgagagtcacatgggtccgaagtcagccagggacaaggtttcca
atgtcttagccatgctgggagatgttaggaaagtcacattctgggtggca
gcccttgtaagactg
gaattctccctgtctcttcatatggtgtacattaaatacttttgttgtca
aagtgacacaaaataaggttcctcgggaggaactttagtgagaaaccctg
gtcaggtggtcctgtgagcttcaggcatgctcactattggcgtgctttga
aacagtcattacattttggtggtggtggtttgagacttgcactaaaatac
tgttcaactataaccaaagattctgtctctaagatgcttccatccctctg
tcccgggccctcatggctcacctggagtccattccctggtgtgcaacccc
acaacccagggagtacttcagccatctgtaaacattctcagctggcctag
ctaaacgatctgggtccccaacgcttatttattgatgatggaataaagga
atgtgggcttagagggctagagcctttcgggggccatctcattgaccaga
tgatgctggagagttcctgaaatagggggaccacagccagagccttcccc
tggaaccaagggttgcatcagtcctgtgggaaaaccagctagtctgctca
gtgtagactagctttgggagaaaacagtctaatgatctgaaagggtcctg
caaaaggaggaagacaatatttgagatggtacaggcccaacagatgtgtg
catgcgtgcacatgtgagtgcacgtgtgagtgtgtgttggatcagtggag
aacaggatgcagtgggcaaaacagtacatagagagagatgtgcggagcag
aagtcggcagggaaagactttagggagcaaagtgagctaggagagagctg
ttgcttgctggctgcttcacagtaggaagttcccaggcgggtgtcaaggc
ctgagattgacagatgatacaacccaagcattctgtgccctgtgtaattg
acagcagagacagactcaacctggcctggctcagcctcgtttccctcctg
cgagaatcctgggttgctgtgaagcaagcttcttctctctgcagaacaga
aaccctgacttgttaggcctgagccggtgatttggtgagcgcctcagatg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30008568_30009529
seq2: B6Ng01-168J06.b_47_1011 (reverse)

seq1  CAGTCTTGC-ATGGCTGCCACCCAGAATGTGACTTTGCCTACATCTCCCT  49
      ||||||| | | |||||||||||||||||||||||| |  ||||||||| 
seq2  CAGTCTTACAAGGGCTGCCACCCAGAATGTGACTTTCCTAACATCTCCCA  50

seq1  GCATGGCT-AGGCATTGGAAACCTTGTCCCTGGCTGACTTCTGGACCCAT  98
      |||||||| || ||||||||||||||||||||||||||||| ||||||||
seq2  GCATGGCTAAGACATTGGAAACCTTGTCCCTGGCTGACTTC-GGACCCAT  99

seq1  GTGACTCTC-ATCCAATGACTAG-AGGGGAGGCTGCCCCCGCGTTG-AGG  145
      ||||||||| ||| ||||||||| || |||| |||||||||| ||| |||
seq2  GTGACTCTCAATCAAATGACTAGAAGAGGAGACTGCCCCCGCATTGAAGG  149

seq1  TGCAGGGCTCTTGCCTAGCTCTCCGGGGGAAGGGTCAGGCAGAGTGGAAC  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCTC-TGCCTAGCTCTCCGGGGGAAGGGTCAGGCAGAGTGGAAC  198

seq1  CTCCTGTTCAGGGCTGGCAAGGTCCAGACTGGAGCTGTCACACAACCCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCAGGGCTGGCAAGGTCCAGACTGGAGCTGTCACACAACCCCA  248

seq1  TGAGGTCAGTCCCCTGCATAGCCCTCAGTTCTCTGGCCCTTTCCCGGAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGTCCCCTGCATAGCCCTCAGTTCTCTGGCCCTTTCCCGGAAA  298

seq1  GAGGTCACCGCCCAGGAGCTCTCAGAACAGGGGCTCTCTGTGTCTAAGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACCGCCCAGGAGCTCTCAGAACAGGGGCTCTCTGTGTCTAAGGC  348

seq1  CGGCCTGGTGGAGCAGGAGGATGCATAAGGCCAGCGGGGGCAAAAGAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGGTGGAGCAGGAGGATGCATAAGGCCAGCGGGGGCAAAAGAAGG  398

seq1  GCGTGCTGGGCCACTCGCTGCGGGTGGCGCCGCAGCCCCGGGTCGCCGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTGGGCCACTCGCTGCGGGTGGCGCCGCAGCCCCGGGTCGCCGGC  448

seq1  AGGGACCGGCGTGTGGGCGGAGAGGCGGCGCGCGCTCGGAAGTGGCCCCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCGGCGTGTGGGCGGAGAGGCGGCGCGCGCTCGGAAGTGGCCCCG  498

seq1  GGCGGCCTCCCAGGCGGGCGGCTCCTGTTTCCCGGCTCCCGGGCGGGCGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCTCCCAGGCGGGCGGCTCCTGTTTCCCGGCTCCCGGGCGGGCGG  548

seq1  GCGCGGGCCAGCTGCTGGGAGGTGAGCGGAGCAGCGTTTTCCCACAGTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGGCCAGCTGCTGGGAGGTGAGCGGAGCAGCGTTTTCCCACAGTCT  598

seq1  GGGGCGGTGACACATGGCGCTCACACATTCCACAGCCGGCGGCCGCGCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGGTGACACATGGCGCTCACACATTCCACAGCCGGCGGCCGCGCCA  648

seq1  GGCCTGGCGGTGAGTCAAGGCAGCGCGGGGAGCTGCCGAGAGCAGGTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCGGTGAGTCAAGGCAGCGCGGGGAGCTGCCGAGAGCAGGTTCC  698

seq1  GACTTTGGCACCCGGCGCGCCGCCTTCCCGCCTTGCCCAGCCCGGCGGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGCACCCGGCGCGCCGCCTTCCCGCCTTGCCCAGCCCGGCGGGG  748

seq1  GCGGAGGGGGGAGGGGGACGCCGGTTAACCCTTGGCTACCTAGGCGTACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGGGGGAGGGGGACGCCGGTTAACCCTTGGCTACCTAGGCGTACA  798

seq1  GCAGCAGAGGCTCCGATGCTTGTCCATTGAGGGGGGACAGAGGGGTGGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGGCTCCGATGCTTGTCCATTGAGGGGGGACAGAGGGGTGGGG  848

seq1  GATACATCACCACGGCGGATACCTACACACCCTGTGTTCCTTGTGCGTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATCACCACGGCGGATACCTACACACCCTGTGTTCCTTGTGCGTTC  898

seq1  TTTGCTTTTTTTAGACCGGGGGGGGGGGGGGGGAGGGGGTATCTGTAATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTTTAGACCGGGGGGGGGGGGGGGGAGGGGGTATCTGTAATC  948

seq1  CAAACTAGTCTGAATTC  962
      |||||||||||||||||
seq2  CAAACTAGTCTGAATTC  965

seq1: chr16_29844008_29845073
seq2: B6Ng01-168J06.g_67_1118

seq1  GAATTCTCCCTGTCTCTTCATATGGTGTACATTAAATACTTTTGTTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGTCTCTTCATATGGTGTACATTAAATACTTTTGTTGTCA  50

seq1  AAGTGACACAAAATAAGGTTCCTCGGGAGGAACTTTAGTGAGAAACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACACAAAATAAGGTTCCTCGGGAGGAACTTTAGTGAGAAACCCTG  100

seq1  GTCAGGTGGTCCTGTGAGCTTCAGGCATGCTCACTATTGGCGTGCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGGTCCTGTGAGCTTCAGGCATGCTCACTATTGGCGTGCTTTGA  150

seq1  AACAGTCATTACATTTTGGTGGTGGTGGTTTGAGACTTGCACTAAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCATTACATTTTGGTGGTGGTGGTTTGAGACTTGCACTAAAATAC  200

seq1  TGTTCAACTATAACCAAAGATTCTGTCTCTAAGATGCTTCCATCCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACTATAACCAAAGATTCTGTCTCTAAGATGCTTCCATCCCTCTG  250

seq1  TCCCGGGCCCTCATGGCTCACCTGGAGTCCATTCCCTGGTGTGCAACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGGCCCTCATGGCTCACCTGGAGTCCATTCCCTGGTGTGCAACCCC  300

seq1  ACAACCCAGGGAGTACTTCAGCCATCTGTAAACATTCTCAGCTGGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAGGGAGTACTTCAGCCATCTGTAAACATTCTCAGCTGGCCTAG  350

seq1  CTAAACGATCTGGGTCCCCAACGCTTATTTATTGATGATGGAATAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACGATCTGGGTCCCCAACGCTTATTTATTGATGATGGAATAAAGGA  400

seq1  ATGTGGGCTTAGAGGGCTAGAGCCTTTCGGGGGCCATCTCATTGACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCTTAGAGGGCTAGAGCCTTTCGGGGGCCATCTCATTGACCAGA  450

seq1  TGATGCTGGAGAGTTCCTGAAATAGGGGGACCACAGCCAGAGCCTTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGGAGAGTTCCTGAAATAGGGGGACCACAGCCAGAGCCTTCCCC  500

seq1  TGGAACCAAGGGTTGCATCAGTCCTGTGGGAAAACCAGCTAGTCTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCAAGGGTTGCATCAGTCCTGTGGGAAAACCAGCTAGTCTGCTCA  550

seq1  GTGTAGACTAGCTTTGGGAGAAAACAGTCTAATGATCTGAAAGGGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACTAGCTTTGGGAGAAAACAGTCTAATGATCTGAAAGGGTCCTG  600

seq1  CAAAAGGAGGAAGACAATATTTGAGATGGTACAGGCCCAACAGATGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGGAAGACAATATTTGAGATGGTACAGGCCCAACAGATGTGTG  650

seq1  CATGCGTGCACATGTGAGTGCACGTGTGAGTGTGTGTTGGATCAGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGTGCACATGTGAGTGCACGTGTGAGTGTGTGTTGGATCAGTGGAG  700

seq1  AACAGGATGCAGTGGGCAAAACAGTACATAGAGAGAGATGTGCGGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATGCAGTGGGCAAAACAGTACATAGAGAGAGATGTGCGGAGCAG  750

seq1  AAGTCGGCAGGGAAAGACTTTAGGGAGCAAAGTGAGCTAGGAGAGAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGCAGGGAAAGACTTTAGGGAGCAAAGTGAGCTAGGAGAGAGCTG  800

seq1  TTGCTTGCTGGCTGCTTCACAGTAGGAAGTTCCCAGGCGGGTGTCAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTGGCTGCTTCACAGTAGGAAGTTCCCAGGCGGGTGTCAAGGC  850

seq1  CTGAGATTGACAGATGATACAACCCAAGCATTCTGTGCCCTGTGTAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTGACAGATGATACAACCCAAGCATTCTGTGCCCTGTGTAATTG  900

seq1  ACAGCAGGAGACAGACTCAACCTGGCCTGGCCTCAGCCTCGTTTCCCTCC  950
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAGCA-GAGACAGACTCAACCTGGCCTGG-CTCAGCCTCGTTTCCCTCC  948

seq1  TGCGAAGAATCCTGGGGTTGCTGTGAAGCAAGCTTCCTTCTCTCTGCAGA  1000
      |||| |||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TGCG-AGAATCCT-GGGTTGCTGTGAAGCAAGCTT-CTTCTCTCTGCAGA  995

seq1  ACAGAAACCCTGAC-TGTCAGGGGCCTGAGGGCCGGGTTGGATGTGGGTG  1049
      |||||||||||||| ||| |  |||||||  |||||    ||| | ||||
seq2  ACAGAAACCCTGACTTGTTA--GGCCTGA--GCCGG---TGAT-TTGGTG  1037

seq1  AAGCCGCCTCAGATGTG  1066
      |   |||||||||||||
seq2  A--GCGCCTCAGATGTG  1052