BAC Information

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BAC

Clone NameB6Ng01-169E10
Chromosome16 (Build37)
Map Location 15,623,957 - 15,778,752
singlet/doubletdoublet
Overlap geneMcm4, Prkdc
Upstream geneSnai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682
Downstream gene2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169E10.bB6Ng01-169E10.g
ACCDH960299DH960300
length9301,182
definitionDH960299|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E10, 5' end.DH960300|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,777,826 - 15,778,752)(15,623,957 - 15,625,183)
sequence
gaattctaaacattcatgtctattagatcaactacaatggtgactgaagt
aaaaatggcctcatctggatatggtggcatacacctttaatcctagctct
cagcaggcagaggtaggcagatctctgtgaatttgagggtagtctggttt
acatagtgagttctaggactatgaagagagactatgtctccaaagattta
tatgaagttaattaattttaatcaatccaattaaaaaacaaaaaatccct
cagcatcaggcagtgctgcctgttggtcctgtgacaaacactatccatgc
tcccctttgctgtttcttaaaggcatggttcccagtcaaagagagagggg
tgtgtgtgtgtgtcgggggggtggtaacagatcagcttagcttcttctgg
cttacccaatactgcaccctagcagttaatgtagtagctggcatacacag
caggtagtccataaacaaacatttgttaaataaaatactagaaatagaag
tggattactgggacacctctcctcaaagaagagaaggggaaaaaaatgca
gtcttgtttctttaaaagaataaacacgttttgttttctaagcacaaaat
ggatgggctttgacaaactcttaagcctgtaactgccaatgtattataca
tgatagtgccctctggtttaaacaggacacaatgaagagttgatgtccac
tacgcacaagaggcaggaatcagggcactatacaactgagaaatggagag
caggggaagacaggtgtctcctttcttccctgacacttagaggtacctgt
cgctttggtaactcgcagtctttatccaaatcataatcaatgacataaga
ctatgtggagaatcttggtgcaggaacgtgaaggtacttcacagcaacac
aaatctcatgaaaagttaacatgactatgc
gaattccaagttacattaatgcctacttcatataattcaaatggtttaga
gatttattgtaatatttacacaagatttaatgctacaatggctttgaaac
taataatctaaggatctataaaaattaatgaaattcataccttgattttt
ttataacctatccagcactattatgatttcaaaaaatatagtctttagca
aagttctgctcttaatgagaaataattttaaaccaagtattacttttcta
tcatttatttaggaaaatgttttacatattaggaaaaaacagaaggcaac
ttgatttaataatttttcaagcatatctttgttctaataatagttatggg
aaaaagtctctgtaaagaaagttaagtccaggtgctataaaaatcattag
cccatcatatcacagtaaaggatgtacggctgccagttataccaagcaca
caatgctccacacagtaaggacatagcctctacatacagcatgcatggta
ctcttaccttcctccccagcattgcaacacaacaaaggcacagcccctac
attaaaaaaaacctccaaaactgggcttaggctctctgtgtacaaacagg
taagaagcaagctgcttaaaaaatatggcatattgagaatataaactcta
ctatatgttgataatttaaaatgttaaaaaaaggtgaaaacatacattta
ctaacaaaatacattccaggaatagaagaggtttatatagtggaatactg
cctttcagactccttttgcagcaataacaacagtgagtgactctagtccg
agggccatgcagctcagagcagcggacagtcttcccagtcactgttagga
aatcatcatcagccaaagctcgcagggcttcttcaaacatgtccttggta
attgcctagaaacacaaatgtcacagattgtctttactgtcagcacacat
gctttaatgttaaaccaccgctaaagtctttgtctttggtgctgtagaca
tcatttgcatatatatatatggatacatatctatcatttttgggtgcctg
tggctgttataaatgaagtcaagacagctttcaagtcagtagtcttccct
tctaccacacagtcgagaatggactagctcatcagcctaatgtgagatct
ctaccatgacactcaaccctgcttagagcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15777826_15778752
seq2: B6Ng01-169E10.b_45_974 (reverse)

seq1  GCATAGTCATG-TAACTTTTCATGAGATTTGTTGTTGCTGTGAAGTACCT  49
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GCATAGTCATGTTAACTTTTCATGAGATTTG-TGTTGCTGTGAAGTACCT  49

seq1  TCACGTCCTTGCACC-AGATTCTCCACATAGTCTTATGTCATTGATTATG  98
      |||||| | |||||| ||||||||||||||||||||||||||||||||||
seq2  TCACGTTCCTGCACCAAGATTCTCCACATAGTCTTATGTCATTGATTATG  99

seq1  A-TTGGATAAAGACTGCGAGTTACCAAAGCGACAGGTACCTCTAAGTGTC  147
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATAAAGACTGCGAGTTACCAAAGCGACAGGTACCTCTAAGTGTC  149

seq1  AGGGAAG-AAGGAGACACCTGTCTTCCCCTGCTCTCCATTTCTCAGTTGT  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAAAGGAGACACCTGTCTTCCCCTGCTCTCCATTTCTCAGTTGT  199

seq1  ATAGTGCCCTGATTCCTGCCTCTTGTGCGTAGTGGACATCAACTCTTCAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCCCTGATTCCTGCCTCTTGTGCGTAGTGGACATCAACTCTTCAT  249

seq1  TGTGTCCTGTTTAAACCAGAGGGCACTATCATGTATAATACATTGGCAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGTTTAAACCAGAGGGCACTATCATGTATAATACATTGGCAGT  299

seq1  TACAGGCTTAAGAGTTTGTCAAAGCCCATCCATTTTGTGCTTAGAAAACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTTAAGAGTTTGTCAAAGCCCATCCATTTTGTGCTTAGAAAACA  349

seq1  AAACGTGTTTATTCTTTTAAAGAAACAAGACTGCATTTTTTTCCCCTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTTTATTCTTTTAAAGAAACAAGACTGCATTTTTTTCCCCTTCT  399

seq1  CTTCTTTGAGGAGAGGTGTCCCAGTAATCCACTTCTATTTCTAGTATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGAGGAGAGGTGTCCCAGTAATCCACTTCTATTTCTAGTATTTT  449

seq1  ATTTAACAAATGTTTGTTTATGGACTACCTGCTGTGTATGCCAGCTACTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAAATGTTTGTTTATGGACTACCTGCTGTGTATGCCAGCTACTA  499

seq1  CATTAACTGCTAGGGTGCAGTATTGGGTAAGCCAGAAGAAGCTAAGCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTGCTAGGGTGCAGTATTGGGTAAGCCAGAAGAAGCTAAGCTGA  549

seq1  TCTGTTACCACCCCCCCGACACACACACACACCCCTCTCTCTTTGACTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACCACCCCCCCGACACACACACACACCCCTCTCTCTTTGACTGG  599

seq1  GAACCATGCCTTTAAGAAACAGCAAAGGGGAGCATGGATAGTGTTTGTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGCCTTTAAGAAACAGCAAAGGGGAGCATGGATAGTGTTTGTCA  649

seq1  CAGGACCAACAGGCAGCACTGCCTGATGCTGAGGGATTTTTTGTTTTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAACAGGCAGCACTGCCTGATGCTGAGGGATTTTTTGTTTTTTA  699

seq1  ATTGGATTGATTAAAATTAATTAACTTCATATAAATCTTTGGAGACATAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTGATTAAAATTAATTAACTTCATATAAATCTTTGGAGACATAG  749

seq1  TCTCTCTTCATAGTCCTAGAACTCACTATGTAAACCAGACTACCCTCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCATAGTCCTAGAACTCACTATGTAAACCAGACTACCCTCAAA  799

seq1  TTCACAGAGATCTGCCTACCTCTGCCTGCTGAGAGCTAGGATTAAAGGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGATCTGCCTACCTCTGCCTGCTGAGAGCTAGGATTAAAGGTG  849

seq1  TATGCCACCATATCCAGATGAGGCCATTTTTACTTCAGTCACCATTGTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACCATATCCAGATGAGGCCATTTTTACTTCAGTCACCATTGTAG  899

seq1  TTGATCTAATAGACATGAATGTTTAGAATTC  927
      |||||||||||||||||||||||||||||||
seq2  TTGATCTAATAGACATGAATGTTTAGAATTC  930

seq1: chr16_15623957_15625183
seq2: B6Ng01-169E10.g_69_1250

seq1  GAATTCCAAGTTACATTAATGCCTACTTCATATAATTCAAATGGTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTACATTAATGCCTACTTCATATAATTCAAATGGTTTAGA  50

seq1  GATTTATTGTAATATTTACACAAGATTTAATGCTACAATGGCTTTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTGTAATATTTACACAAGATTTAATGCTACAATGGCTTTGAAAC  100

seq1  TAATAATCTAAGGATCTATAAAAATTAATGAAATTCATACCTTGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCTAAGGATCTATAAAAATTAATGAAATTCATACCTTGATTTTT  150

seq1  TTATAACCTATCCAGCACTATTATGATTTCAAAAAATATAGTCTTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACCTATCCAGCACTATTATGATTTCAAAAAATATAGTCTTTAGCA  200

seq1  AAGTTCTGCTCTTAATGAGAAATAATTTTAAACCAAGTATTACTTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGCTCTTAATGAGAAATAATTTTAAACCAAGTATTACTTTTCTA  250

seq1  TCATTTATTTAGGAAAATGTTTTACATATTAGGAAAAAACAGAAGGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTAGGAAAATGTTTTACATATTAGGAAAAAACAGAAGGCAAC  300

seq1  TTGATTTAATAATTTTTCAAGCATATCTTTGTTCTAATAATAGTTATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAATAATTTTTCAAGCATATCTTTGTTCTAATAATAGTTATGGG  350

seq1  AAAAAGTCTCTGTAAAGAAAGTTAAGTCCAGGTGCTATAAAAATCATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTCTGTAAAGAAAGTTAAGTCCAGGTGCTATAAAAATCATTAG  400

seq1  CCCATCATATCACAGTAAAGGATGTACGGCTGCCAGTTATACCAAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATATCACAGTAAAGGATGTACGGCTGCCAGTTATACCAAGCACA  450

seq1  CAATGCTCCACACAGTAAGGACATAGCCTCTACATACAGCATGCATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCCACACAGTAAGGACATAGCCTCTACATACAGCATGCATGGTA  500

seq1  CTCTTACCTTCCTCCCCAGCATTGCAACACAACAAAGGCACAGCCCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCTTCCTCCCCAGCATTGCAACACAACAAAGGCACAGCCCCTAC  550

seq1  ATTAAAAAAAACCTCCAAAACTGGGCTTAGGCTCTCTGTGTACAAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAACCTCCAAAACTGGGCTTAGGCTCTCTGTGTACAAACAGG  600

seq1  TAAGAAGCAAGCTGCTTAAAAAATATGGCATATTGAGAATATAAACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCAAGCTGCTTAAAAAATATGGCATATTGAGAATATAAACTCTA  650

seq1  CTATATGTTGATAATTTAAAATGTTAAAAAAAGGTGAAAACATACATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTGATAATTTAAAATGTTAAAAAAAGGTGAAAACATACATTTA  700

seq1  CTAACAAAATACATTCCAGGAATAGAAGAGGTTTATATAGTGGAATACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAAATACATTCCAGGAATAGAAGAGGTTTATATAGTGGAATACTG  750

seq1  CCTTTCAGACTCCTTTTGCAGCAATAACAACAGTGAGTGACTCTAGTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGACTCCTTTTGCAGCAATAACAACAGTGAGTGACTCTAGTCCG  800

seq1  AGGGCCATGCAGCTCAGAGCAGGCGGACAGTCTTCCCAGTCACTGTTAGG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGCCATGCAGCTCAGAGCA-GCGGACAGTCTTCCCAGTCACTGTTAGG  849

seq1  AAATCATCATCAGCCAAAGCTCGCAGGGCTTCTTCAAACATGTCCTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCATCAGCCAAAGCTCGCAGGGCTTCTTCAAACATGTCCTTGGT  899

seq1  AATTGCCTAGAAAACACAAATGTCACAGATTGTCTTTACTGTCAGGCACA  950
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AATTGCCTAG-AAACACAAATGTCACAGATTGTCTTTACTGTCA-GCACA  947

seq1  CATGCTTTAATGTTAAACCACCGCTTAAAGTCTTTGTCTTTTTGGTGGCT  1000
      |||||||||||||||||||||||| |||||||||||||  |||||| |||
seq2  CATGCTTTAATGTTAAACCACCGC-TAAAGTCTTTGTC--TTTGGT-GCT  993

seq1  GTAGACAATTCATTTTGCATATATATATATGAGATACAATTATCTTATTC  1050
      |||||||  ||| |||||||||||||||||| ||||||  |||||   ||
seq2  GTAGACA--TCA-TTTGCATATATATATATG-GATACA--TATCT--ATC  1035

seq1  ATTTTTGTGTGCCTGTGGGCTGGTTATAAATGGAAGTCAAAGGACAGCTT  1100
      ||||||| |||||||| |||| ||||||||| ||||||||  ||||||||
seq2  ATTTTTGGGTGCCTGT-GGCT-GTTATAAAT-GAAGTCAA--GACAGCTT  1080

seq1  TCCAAAGTCAAGTTAGTTCTCCCCTTCTACCACACAGGTTCCAGAGATAG  1150
      ||  ||||||   ||| ||| ||||||||||||||||  || ||| || |
seq2  TC--AAGTCA--GTAG-TCTTCCCTTCTACCACACAG--TCGAGA-ATGG  1122

seq1  AACTTAGCTCATCAGGCTTAGTGGTAGGTATCTTCTTTACCCACTGACCC  1200
      |   |||||||||| || || ||  ||      ||| ||||   |||| |
seq2  A--CTAGCTCATCA-GCCTAATGTGAG-----ATCTCTACC--ATGACAC  1162

seq1  ATCTTATCAACCCTGCTAAAGAGCATT  1227
            |||||||||||  ||||||||
seq2  ------TCAACCCTGCT-TAGAGCATT  1182