BAC Information

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BAC

Clone NameB6Ng01-169G12
Chromosome16 (Build37)
Map Location 4,472,618 - 4,473,729
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169G12.bB6Ng01-169G12.g
ACCDH960393DH960394
length1,0061,087
definitionDH960393|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G12, 5' end.DH960394|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcaaagaagatgcacatttggctaaaaagcatgtgcaaaaact
gttcaacatcattagacatcaagaatatacaaatcgaaactacaatgagc
ctggtatgagaactctagccaacctctcagggctaacaaagtcatggaca
ttagaggacaacccacaaccaccccttcactaaatcagcacaatcccgaa
ggacagtcgaagcatttgcccatgtaccccagataaaccctcatcaagga
aacttctctttgaggcagatgaaaacctctacagaaaatcacagagttgt
ggagcatagtctcaaagagcaaatgtgtctacaaaacatcccagcacagg
gatcactgtgaaaggggcagaaggatgtcagagccagcggagcagggtct
gctgtgtgactaggatgtcagagccagcggagcagggtctgctgtgtgac
aaggatgtcagagccagcggagcagggtctgctgtgtgacaaggatgtca
gagccagcggagcagggtctgctgtgtgacaaggatgtcagagccagcgg
agcagggtctgctgtgtgacaaggatgtcagagccagcggagcagggtct
gttgtgtgactaggtctcctggagcatcagaaaccagacccataaaagct
cactaacatggctgccggaacacaagctgaacaaaaatgacatcgataag
cattccaaagtgggagagaaagttcacagggcttcagccccacaccaagg
accacaggcaaccaaggagcactggcagcaggagaaatgttttccccggg
gacgagcacaccgactggttatccaggactcaatggtcagctctgaagat
acatacaagtaacattatacgaactaagaagattatatttaggaatatat
atgtatatacttacattcatataataataattagtgagaaagaggtcata
aatttgaaagagagcaagcagaggtatatgggaaggaggagagggaagga
gagagg
gaattctttgagctgttccccaaatcatcaattttaggatctgaaaggac
ataagagattctgtagtagtttcctcaagaagccagcactggctgtggta
gcccatgcctttagtagtagaattaaagaaagagaaggcagaatcaggct
gagttttgtgaatttgaggtcagcctagtatatatagcgagttccaagac
agctggactacatagagaccctgtttcaaaataagtaggtaaaccaaaaa
caaatcaaacagtcatcgccttggaatgtaggcagagcacttgattacca
tgtgtgaggcaccctctccttcagacatcctcatcaggaaataaaattaa
ttcgattctgtttggaacaagccctgtgacagggatctgaattcagagca
gtgtgtgtcagggtccaccagggtcagggttagctcaccgagctctagga
ggcagagacttcaagtgtggcttcccgggcaggtctgtggagaacaaaag
agccacattacatggcagcgctcaccaaaggacttttgcttttcttttta
tttactcctgggacttgtctaggggcagctacaggacatctgcatgaagc
cccacgtgggttggcatttcccctgatggcttgaataggccatctttagg
ttaaaagagtaagtttgggaatctgaaaaagtatcttggatttctgtttg
gttttcctagtgtaagagagcttttggaattgaagtgcttctgtctggag
ccatctttccccacctcctcattcccgagatccttcacactctgggcagg
gacccagggtgctgcctctcctctccgctcagctctgactccctgttcca
cccacgagctcagttctgctaattgcatttctggtgctgctggaggaaca
ctgagttcctcagggatagcaacaccagtttgtgggtagtttaccagcac
ccctaaatggtgtgttgtagagtcagagctttaaatttgtcccttccccc
aggctctcagatctatgactgcttctttctagagggctcactaccttccc
catctaagcccctcctcaaagagttaagtttggtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4472618_4473729
seq2: B6Ng01-169G12.g_67_1153 (reverse)

seq1  AGTACACAAACTGTAACTTCCTTTGATGAGGGGCTTAGATGGGGGAAAGG  50
      ||||| |||||| |||||  |||||| |||||||||||||||||  ||||
seq2  AGTAC-CAAACT-TAACT--CTTTGAGGAGGGGCTTAGATGGGG--AAGG  44

seq1  TTAGTGAGCCCTCTAGGAAAGAAGCAGTCAATAAAGATTCTGAAGAAGCC  100
       |||||||||||||| |||||||||||||   | ||| |||||   ||||
seq2  -TAGTGAGCCCTCTA-GAAAGAAGCAGTC---ATAGA-TCTGA--GAGCC  86

seq1  TGGGGGGAAGGGACCAATAATTTTAAAGCTCTTGACTCTACAACACACCA  150
      | ||||||||||||    || |||||||||| ||||||||||||||||||
seq2  T-GGGGGAAGGGAC----AAATTTAAAGCTC-TGACTCTACAACACACCA  130

seq1  TTTTAGGGGTGCTGGTAAAACTACCCACCAAACTGGTTGTTGCTTATCCC  200
       ||||||||||||||| |||||||||| |||||||| |||||| ||||||
seq2  -TTTAGGGGTGCTGGT-AAACTACCCA-CAAACTGG-TGTTGC-TATCCC  175

seq1  TGAGGAACTCAGTGTTCCTCCAGCAGCACCAGAAATGCAATTAGCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACTCAGTGTTCCTCCAGCAGCACCAGAAATGCAATTAGCAGAAC  225

seq1  TGAGCTCGTGGGTGGAACAGGGAGTCAGAGCTGAGCGGAGAGGAGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCGTGGGTGGAACAGGGAGTCAGAGCTGAGCGGAGAGGAGAGGCA  275

seq1  GCACCCTGGGTCCCTGCCCAGAGTGTGAAGGATCTCGGGAATGAGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGGGTCCCTGCCCAGAGTGTGAAGGATCTCGGGAATGAGGAGGT  325

seq1  GGGGAAAGATGGCTCCAGACAGAAGCACTTCAATTCCAAAAGCTCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGATGGCTCCAGACAGAAGCACTTCAATTCCAAAAGCTCTCTTA  375

seq1  CACTAGGAAAACCAAACAGAAATCCAAGATACTTTTTCAGATTCCCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGAAAACCAAACAGAAATCCAAGATACTTTTTCAGATTCCCAAAC  425

seq1  TTACTCTTTTAACCTAAAGATGGCCTATTCAAGCCATCAGGGGAAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTTAACCTAAAGATGGCCTATTCAAGCCATCAGGGGAAATGCC  475

seq1  AACCCACGTGGGGCTTCATGCAGATGTCCTGTAGCTGCCCCTAGACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACGTGGGGCTTCATGCAGATGTCCTGTAGCTGCCCCTAGACAAGT  525

seq1  CCCAGGAGTAAATAAAAAGAAAAGCAAAAGTCCTTTGGTGAGCGCTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTAAATAAAAAGAAAAGCAAAAGTCCTTTGGTGAGCGCTGCCA  575

seq1  TGTAATGTGGCTCTTTTGTTCTCCACAGACCTGCCCGGGAAGCCACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTGGCTCTTTTGTTCTCCACAGACCTGCCCGGGAAGCCACACTT  625

seq1  GAAGTCTCTGCCTCCTAGAGCTCGGTGAGCTAACCCTGACCCTGGTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCTGCCTCCTAGAGCTCGGTGAGCTAACCCTGACCCTGGTGGAC  675

seq1  CCTGACACACACTGCTCTGAATTCAGATCCCTGTCACAGGGCTTGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACACACTGCTCTGAATTCAGATCCCTGTCACAGGGCTTGTTCCA  725

seq1  AACAGAATCGAATTAATTTTATTTCCTGATGAGGATGTCTGAAGGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCGAATTAATTTTATTTCCTGATGAGGATGTCTGAAGGAGAGG  775

seq1  GTGCCTCACACATGGTAATCAAGTGCTCTGCCTACATTCCAAGGCGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCACACATGGTAATCAAGTGCTCTGCCTACATTCCAAGGCGATGA  825

seq1  CTGTTTGATTTGTTTTTGGTTTACCTACTTATTTTGAAACAGGGTCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGATTTGTTTTTGGTTTACCTACTTATTTTGAAACAGGGTCTCTA  875

seq1  TGTAGTCCAGCTGTCTTGGAACTCGCTATATATACTAGGCTGACCTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCAGCTGTCTTGGAACTCGCTATATATACTAGGCTGACCTCAAA  925

seq1  TTCACAAAACTCAGCCTGATTCTGCCTTCTCTTTCTTTAATTCTACTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAACTCAGCCTGATTCTGCCTTCTCTTTCTTTAATTCTACTACT  975

seq1  AAAGGCATGGGCTACCACAGCCAGTGCTGGCTTCTTGAGGAAACTACTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGGGCTACCACAGCCAGTGCTGGCTTCTTGAGGAAACTACTAC  1025

seq1  AGAATCTCTTATGTCCTTTCAGATCCTAAAATTGATGATTTGGGGAACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTTATGTCCTTTCAGATCCTAAAATTGATGATTTGGGGAACAG  1075

seq1  CTCAAAGAATTC  1112
      ||||||||||||
seq2  CTCAAAGAATTC  1087