BAC Information

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BAC

Clone NameB6Ng01-171G06
Chromosome16 (Build37)
Map Location 39,469,025 - 39,651,602
singlet/doubletdoublet
Overlap genenone
Upstream geneCd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171G06.bB6Ng01-171G06.g
ACCGA000290GA000291
length2771,107
definitionB6Ng01-171G06.b B6Ng01-171G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,651,326 - 39,651,602)(39,469,025 - 39,470,136)
sequence
ttaacctgtgcagctttgttgtatcaaaattagtactttgacttaataat
attgagaccttaataagtggggtagggatatcgtacttgttatgtataaa
aatcttgtttgagattcccttgaaccacttagatggtttttgtttttcac
atattatcatttgtaagcttctctttgattgaaaatgctgaaaacaaaga
gaagagaagagaagagaagagaagagaagagaagagaagagaagagaaga
gaagagaagagaagagaagaggggagg

gaattcctgaatagactctactagcatagaaagaaattccaagaaataaa
aaaatggcatacacgatattaaaaatgctactacatgtatacacaacaac
aataattaaaaaaaagagatcatgaatttgagagggaacaaggggcagca
tataaaggattgaagagagaaatacaggaaaaatattttaactttaaaaa
ttgaaaattaaaaatgtgtagtctatgagagaagatctattttcaataaa
aataatgaaaaaagaaaactaaaaatatgagaaattaatgatttgctgac
ttatgtgagataaaaatctatattaattaaaaaaaatctcctactttctg
gctcacttagcttgcttccttatgtatcctaggaacacctactcatagat
gccatcacacaaagtggggtcccttctatgccaagaaaattctgcaacag
acttgcttacaggccagtctgatctagatttctttttccaattgaggttg
cctgacaacttaccatataattattgtatgtgtcaagttgacacaaaact
aaccagaacatggtgtgaaaaggtacatgctatgcaaaccagagtacatc
cctttttgagatgttttctgcaggcttttttttttaatagcagtgagaaa
aataactaatacaaatgtgttagggaaatataaacttcttatatcagggt
gttctatgtcttctaagagaagagatttttctggtaactattcagttaag
taagattttttccaatattattgcaatcattttattatcaattataattt
attataataatatgataaaataaataagtaatttaatttattaataatta
ttaaatttaaaaagccattaactatttaattttttaacatctctatcact
actctctttaattgctgccctcctcacagggccccttctcccatgccctg
ctctttctttcctgagaggggtgggtaaggtccctctggtattcatccac
cctgtgcatctatacaggttaggtgcattcctctccactgatgctggaca
ggtcagtctgttgggaaacttcacagaactgcaccataaggacacgtcca
ctctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_39651326_39651602
seq2: B6Ng01-171G06.b_35_311 (reverse)

seq1  CCTCCCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  50

seq1  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTGTTTTCAGCATTTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTGTTTTCAGCATTTTCAAT  100

seq1  CAAAGAGAAGCTTACAAATGATAATATGTGAAAAACAAAAACCATCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAGCTTACAAATGATAATATGTGAAAAACAAAAACCATCTAAG  150

seq1  TGGTTCAAGGGAATCTCAAACAAGATTTTTATACATAACAAGTACGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAGGGAATCTCAAACAAGATTTTTATACATAACAAGTACGATAT  200

seq1  CCCTACCCCACTTATTAAGGTCTCAATATTATTAAGTCAAAGTACTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCCCACTTATTAAGGTCTCAATATTATTAAGTCAAAGTACTAATT  250

seq1  TTGATACAACAAAGCTGCACAGGTTAA  277
      |||||||||||||||||||||||||||
seq2  TTGATACAACAAAGCTGCACAGGTTAA  277


seq1: chr16_39469025_39470136
seq2: B6Ng01-171G06.g_60_1166

seq1  GAATTCCTGAATAGACTCTACTAGCATAGAAAGAAATTCCAAGAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAATAGACTCTACTAGCATAGAAAGAAATTCCAAGAAATAAA  50

seq1  AAAATGGCATACACGATATTAAAAATGCTACTACATGTATACACAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCATACACGATATTAAAAATGCTACTACATGTATACACAACAAC  100

seq1  AATAATTAAAAAAAAGAGATCATGAATTTGAGAGGGAACAAGGGGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAAAAAAAGAGATCATGAATTTGAGAGGGAACAAGGGGCAGCA  150

seq1  TATAAAGGATTGAAGAGAGAAATACAGGAAAAATATTTTAACTTTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGATTGAAGAGAGAAATACAGGAAAAATATTTTAACTTTAAAAA  200

seq1  TTGAAAATTAAAAATGTGTAGTCTATGAGAGAAGATCTATTTTCAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTAAAAATGTGTAGTCTATGAGAGAAGATCTATTTTCAATAAA  250

seq1  AATAATGAAAAAAGAAAACTAAAAATATGAGAAATTAATGATTTGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAAAAAAGAAAACTAAAAATATGAGAAATTAATGATTTGCTGAC  300

seq1  TTATGTGAGATAAAAATCTATATTAATTAAAAAAAATCTCCTACTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAGATAAAAATCTATATTAATTAAAAAAAATCTCCTACTTTCTG  350

seq1  GCTCACTTAGCTTGCTTCCTTATGTATCCTAGGAACACCTACTCATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTAGCTTGCTTCCTTATGTATCCTAGGAACACCTACTCATAGAT  400

seq1  GCCATCACACAAAGTGGGGTCCCTTCTATGCCAAGAAAATTCTGCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCACACAAAGTGGGGTCCCTTCTATGCCAAGAAAATTCTGCAACAG  450

seq1  ACTTGCTTACAGGCCAGTCTGATCTAGATTTCTTTTTCCAATTGAGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTACAGGCCAGTCTGATCTAGATTTCTTTTTCCAATTGAGGTTG  500

seq1  CCTGACAACTTACCATATAATTATTGTATGTGTCAAGTTGACACAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAACTTACCATATAATTATTGTATGTGTCAAGTTGACACAAAACT  550

seq1  AACCAGAACATGGTGTGAAAAGGTACATGCTATGCAAACCAGAGTACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAACATGGTGTGAAAAGGTACATGCTATGCAAACCAGAGTACATC  600

seq1  CCTTTTTGAGATGTTTTCTGCAGGCTTTTTTTTTTAATAGCAGTGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAGATGTTTTCTGCAGGCTTTTTTTTTTAATAGCAGTGAGAAA  650

seq1  AATAACTAATACAAATGTGTTAGGGAAATATAAACTTCTTATATCAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAATACAAATGTGTTAGGGAAATATAAACTTCTTATATCAGGGT  700

seq1  GTTCTATGTCTTCTAAGAGAAGAGATTTTTCTGGTAACTATTCAGTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGTCTTCTAAGAGAAGAGATTTTTCTGGTAACTATTCAGTTAAG  750

seq1  TAAGATTTTTTCCAATATTATTGCAATCATTTTATTATCAATTATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTTTTCCAATATTATTGCAATCATTTTATTATCAATTATAATTT  800

seq1  ATTATAATAATATGATAAAATAAATAAGTAA-TTAATTTATTTAATAATT  849
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  ATTATAATAATATGATAAAATAAATAAGTAATTTAATTTA-TTAATAATT  849

seq1  ATTAAATTTAAAAAGCCATTAACTATTTAATTTTTT-ACATCTCTATCAC  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTAAATTTAAAAAGCCATTAACTATTTAATTTTTTAACATCTCTATCAC  899

seq1  TACTCTCTTT-ATTGCTGCCCTCCTCACAGGGCCCCTTCTCCCATGCCCT  947
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTTTAATTGCTGCCCTCCTCACAGGGCCCCTTCTCCCATGCCCT  949

seq1  GCTCTTTCTTTCCTGAGA-GGGTGGGTAAGGTCCCTCTGGGTATTCATCC  996
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  GCTCTTTCTTTCCTGAGAGGGGTGGGTAAGGTCCCTCT-GGTATTCATCC  998

seq1  ACCCTGGTGCATCTATACAGGTTTAGGTGCA-TCCTCTCCACTGATGCTG  1045
      ||||| ||||||||||||||| ||||||||| ||||||||||||||||||
seq2  ACCCT-GTGCATCTATACAGG-TTAGGTGCATTCCTCTCCACTGATGCTG  1046

seq1  GACAGGGCAGTCCTGTTGGGAAACATTCCACAGACAGGCAACAATTAGGG  1095
      |||||| |||| ||||||||||||  | ||||||   ||| ||  || ||
seq2  GACAGGTCAGT-CTGTTGGGAAAC--TTCACAGAACTGCACCA--TAAGG  1091

seq1  ACAGGCCCCACTCTAGT  1112
      ||| |  ||||||||||
seq2  ACACG-TCCACTCTAGT  1107


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