BAC Information

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BAC

Clone NameB6Ng01-172F19
Chromosome16 (Build37)
Map Location 80,531,800 - 80,672,793
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172F19.bB6Ng01-172F19.g
ACCGA000996GA000997
length1,1141,049
definitionB6Ng01-172F19.b B6Ng01-172F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,671,664 - 80,672,793)(80,531,800 - 80,532,839)
sequence
gaattctgaagatattattgctagtattatatatacaataaaactattag
acgtggatagggaagagaatatattaacctattttttttgttgttgttgt
tttaatggaatacttctgattggagaatctatgaacaaatgtttatttag
gtcatgatggttaaactgggacattctggaatgaggaaaatataccatag
ggacttactttattgttgtttttcaaataatggcagaaggtacaacatga
tggaaaataggaggaaaaaaaagaaagaagggaagaaaaacataaaagaa
gtgggaaaggagagagaagatagaacaatttgcgtaattcatgactaggt
gaaagacaaacttttcctctgatcaataaccaggcctataagtaaaatgg
tcttgtgataatgactttctttattcaagagaatggtatactattaggta
attacctcctcaaggtttacttttctaacactattaaaattaacaataat
tttaatgtgagatttagaggggttattaagactacagttataatgtatct
ctcttctgtaatccttacaaaataatatttctgccattgatttgagaaca
ggactgtgttttaagtagtcacagaaatatatatttaatcagaaagagct
atacacttatcattaagaaaacatgttctgggtgctccaggagatacaga
attcagataaacacactctgcttttgaataacaaaccattccagaaaaac
atgattatttttaaaggtttatttctttattatgcatacggcattctgcc
tgcttgtatgtctgcatgctggaagagagtgccagataccactatagacg
gttatcacccaccatgtcgttgctgggaaattgaactcagaacctcttcc
agtgcttttaacctctgagccatctctttagccctattaaattttaataa
caactttaatatctgatatattctttattcagcattgagatctaccatat
actatgatagagtttttgctgtgaaaatggaagaagctgctattaatatc
atcaatactattatggtgcatttaagaagcatgaagactgaagggaataa
cttgaaaaaatcat

gaattcagaactggcaaatgtaatggatactgaatgttcacaaatgagaa
gacaatacagaaagggtggcaagagattttatcgtgttgtatttgtttgt
ttggaatgctgtgaatgttttctcagaacttttgcaaaggacatgattaa
tgagtatatatttaaacaaaaataaggaatcgagaaatatcaagccttaa
tttttccataaccaaggagagtgaagatagtatattatgaatggctatta
tacaggggaatgagggcccacgaactctgcttctgaagaaaccatggctt
ttccaatatatttaaattcttttctataattttcaacattcctcaaaata
aaagcatatgaaacatcctctatatagattttcaaatgttttaaattgtg
tatatgcttacacacataagtctcactacgtttgaaatctttgtttttga
ttactattatggaatatctcataaacactaacagaaacatgtgatttctc
tttaattgcattcatttaatattcagtataatcattcagtataattattc
atatctttcctttttctactgtcttaagagttcaatggtttatgaaatat
ctgtcttagtacatgtacttctatatacatagtttattaaaaagatcttc
atgcaatgtttcccttttgtattaaattccgttttgtgtggtagtgattt
taaataaatttaatattttgatattccctttattaattggacagttattt
catgattaagacatctaacttgatccattttaatcttattgttcataatc
ttagcaatactctttataaataatacttgtatcatttcattgtgattttg
attaccttgggattattagaatttttgccatagatattttgaactcttat
gcttatatctaggtttgttcctacttgctttccctgtcacctttgttatt
tgggtttatcaaaagtatttgggttcattagccatggaaagctctctgac
tcactttggcctccaacaatgcctctttaacatggaatataaacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80671664_80672793
seq2: B6Ng01-172F19.b_39_1152 (reverse)

seq1  ATGATTTTTTTAAATGTTTATCCC-TCAGTCTTTCATTGCTTTCTTTAAA  49
      |||||||||| ||  |||  |||| |||||| |||| ||| |||||  ||
seq2  ATGATTTTTTCAA--GTTATTCCCTTCAGTC-TTCA-TGC-TTCTT--AA  43

seq1  TTGCACCATAATAGTTATTGGTTGATATTTAAATAGCAGCTTCTTCCATT  99
       ||||||||||||| |||| | |||||||  |||||||||||||||||||
seq2  ATGCACCATAATAG-TATT-GATGATATT--AATAGCAGCTTCTTCCATT  89

seq1  TTTCCACAAGCAAAAACTCTTATCATAGTATATGGTAGATTCTCAATGCT  149
      ||  ||| ||||||||||| ||||||||||||||||||| ||||||||||
seq2  TT--CAC-AGCAAAAACTC-TATCATAGTATATGGTAGA-TCTCAATGCT  134

seq1  GAATAAAGAATATATCAGATATTAAAGTTGTTATTAAAAATTTAATAGGG  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATAAAGAATATATCAGATATTAAAGTTGTTATT-AAAATTTAATAGGG  183

seq1  CTAAAGAGATGGCTCAGAGGTTAAAAGCACTGGAAGAGGTTCTGAGTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGATGGCTCAGAGGTTAAAAGCACTGGAAGAGGTTCTGAGTTCA  233

seq1  A-TTCCCAGCAACGACATGGTGGGTGATAACCGTCTATAGTGGTATCTGG  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAGCAACGACATGGTGGGTGATAACCGTCTATAGTGGTATCTGG  283

seq1  CACTCTCTTCCAGCATGCAGACATACAAGCAGGCAGAATGCCGTATGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTTCCAGCATGCAGACATACAAGCAGGCAGAATGCCGTATGCAT  333

seq1  AATAAAGAAATAAACCTTTAAAAATAATCATGTTTTTCTGGAATGGTTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAATAAACCTTTAAAAATAATCATGTTTTTCTGGAATGGTTTG  383

seq1  TTATTCAAAAGCAGAGTGTGTTTTATCTGAATTCTGTATCTCCTGGAGCA  448
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTCAAAAGCAGAGTGTG-TTTATCTGAATTCTGTATCTCCTGGAGCA  432

seq1  CCCAGAACATGTTTTCTTAATGATAAGTGTATAGCTCTTTCTGATTAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACATGTTTTCTTAATGATAAGTGTATAGCTCTTTCTGATTAAAT  482

seq1  ATATATTTCTGTGACTACTTAAAACACAGTCCTGTTCTCAAATCAATGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCTGTGACTACTTAAAACACAGTCCTGTTCTCAAATCAATGGC  532

seq1  AGAAATATTATTTTGTAAGGATTACAGAAGAGAGATACATTATAACTGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTATTTTGTAAGGATTACAGAAGAGAGATACATTATAACTGTA  582

seq1  GTCTTAATAACCCCTCTAAATCTCACATTAAAATTATTGTTAATTTTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATAACCCCTCTAAATCTCACATTAAAATTATTGTTAATTTTAAT  632

seq1  AGTGTTAGAAAAGTAAACCTTGAGGAGGTAATTACCTAATAGTATACCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGAAAAGTAAACCTTGAGGAGGTAATTACCTAATAGTATACCAT  682

seq1  TCTCTTGAATAAAGAAAGTCATTATCACAAGACCATTTTACTTATAGGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAATAAAGAAAGTCATTATCACAAGACCATTTTACTTATAGGCC  732

seq1  TGGTTATTGATCAGAGGAAAAGTTTGTCTTTCACCTAGTCATGAATTACG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTGATCAGAGGAAAAGTTTGTCTTTCACCTAGTCATGAATTACG  782

seq1  CAAATTGTTCTATCTTCTCTCTCCTTTCCCACTTCTTTTATGTTTTTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTTCTATCTTCTCTCTCCTTTCCCACTTCTTTTATGTTTTTCTT  832

seq1  CCCTTCTTTCTTTTTTTTCCTCCTATTTTCCATCATGTTGTACCTTCTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTCTTTTTTTTCCTCCTATTTTCCATCATGTTGTACCTTCTGC  882

seq1  CATTATTTGAAAAACAACAATAAAGTAAGTCCCTATGGTATATTTTCCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGAAAAACAACAATAAAGTAAGTCCCTATGGTATATTTTCCTC  932

seq1  ATTCCAGAATGTCCCAGTTTAACCATCATGACCTAAATAAACATTTGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAATGTCCCAGTTTAACCATCATGACCTAAATAAACATTTGTTC  982

seq1  ATAGATTCTCCAATCAGAAGTATTCCATTAAAACAACAACAACAAAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTCCAATCAGAAGTATTCCATTAAAACAACAACAACAAAAAAA  1032

seq1  ATAGGTTAATATATTCTCTTCCCTATCCACGTCTAATAGTTTTATTGTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTAATATATTCTCTTCCCTATCCACGTCTAATAGTTTTATTGTAT  1082

seq1  ATATAATACTAGCAATAATATCTTCAGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  ATATAATACTAGCAATAATATCTTCAGAATTC  1114


seq1: chr16_80531800_80532839
seq2: B6Ng01-172F19.g_69_1117

seq1  GAATTCAGAACTGGCAAATGTAATGGATACTGAATGTTCACAAATGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTGGCAAATGTAATGGATACTGAATGTTCACAAATGAGAA  50

seq1  GACAATACAGAAAGGGTGGCAAGAGATTTTATCGTGTTGTATTTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATACAGAAAGGGTGGCAAGAGATTTTATCGTGTTGTATTTGTTTGT  100

seq1  TTGGAATGCTGTGAATGTTTTCTCAGAACTTTTGCAAAGGACATGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGCTGTGAATGTTTTCTCAGAACTTTTGCAAAGGACATGATTAA  150

seq1  TGAGTATATATTTAAACAAAAATAAGGAATCGAGAAATATCAAGCCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATATTTAAACAAAAATAAGGAATCGAGAAATATCAAGCCTTAA  200

seq1  TTTTTCCATAACCAAGGAGAGTGAAGATAGTATATTATGAATGGCTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATAACCAAGGAGAGTGAAGATAGTATATTATGAATGGCTATTA  250

seq1  TACAGGGGAATGAGGGCCCACGAACTCTGCTTCTGAAGAAACCATGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGAATGAGGGCCCACGAACTCTGCTTCTGAAGAAACCATGGCTT  300

seq1  TTCCAATATATTTAAATTCTTTTCTATAATTTTCAACATTCCTCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATATATTTAAATTCTTTTCTATAATTTTCAACATTCCTCAAAATA  350

seq1  AAAGCATATGAAACATCCTCTATATAGATTTTCAAATGTTTTAAATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATATGAAACATCCTCTATATAGATTTTCAAATGTTTTAAATTGTG  400

seq1  TATATGCTTACACACATAAGTCTCACTACGTTTGAAATCTTTGTTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTTACACACATAAGTCTCACTACGTTTGAAATCTTTGTTTTTGA  450

seq1  TTACTATTATGGAATATCTCATAAACACTAACAGAAACATGTGATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTATGGAATATCTCATAAACACTAACAGAAACATGTGATTTCTC  500

seq1  TTTAATTGCATTCATTTAATATTCAGTATAATCATTCAGTATAATTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCATTCATTTAATATTCAGTATAATCATTCAGTATAATTATTC  550

seq1  ATATCTTTCCTTTTTCTACTGTCTTAAGAGTTCAATGGTTTATGAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTCCTTTTTCTACTGTCTTAAGAGTTCAATGGTTTATGAAATAT  600

seq1  CTGTCTTAGTACATGTACTTCTATATACATAGTTTATTAAAAAGATCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGTACATGTACTTCTATATACATAGTTTATTAAAAAGATCTTC  650

seq1  ATGCAATGTTTCCCTTTTGTATTAAATTCCGTTTTGTGTGGTAGTGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGTTTCCCTTTTGTATTAAATTCCGTTTTGTGTGGTAGTGATTT  700

seq1  TAAATAAATTTAATATTTTGATATTCCCTTTATTAATTGGACAGTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATTTAATATTTTGATATTCCCTTTATTAATTGGACAGTTATTT  750

seq1  CATGATTAAGACATCTAACTTGATCCATTTTAATCTTATTGTTCATAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTAAGACATCTAACTTGATCCATTTTAATCTTATTGTTCATAATC  800

seq1  TTAGCAATACTCTTTATAAATAATACTTGTATCATTTCATTGTGATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATACTCTTTATAAATAATACTTGTATCATTTCATTGTGATTTTG  850

seq1  ATTACCTT-GGATTATTAGAATTTTTGCCATAGATATTTTGAACTCTTAT  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTGGGATTATTAGAATTTTTGCCATAGATATTTTGAACTCTTAT  900

seq1  GCTTATATCTA-GTTTGTT-CTACTTGCTTT-CCTGTCACCTTTGTTATT  946
      ||||||||||| ||||||| ||||||||||| ||||||||||||||||||
seq2  GCTTATATCTAGGTTTGTTCCTACTTGCTTTCCCTGTCACCTTTGTTATT  950

seq1  T-GGTTTATCAAAAGTATTT-GGTTCATTAGCCAT-GAAAGCTCTCTGAC  993
      | |||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TGGGTTTATCAAAAGTATTTGGGTTCATTAGCCATGGAAAGCTCTCTGAC  1000

seq1  TCACTTT-GCCTCCAACAATG-CTCTTTAACAT-GAATATAACACACACA  1040
      ||||||| ||||||||||||| ||||||||||| |||||||| |||||||
seq2  TCACTTTGGCCTCCAACAATGCCTCTTTAACATGGAATATAA-ACACACA  1049


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