BAC Information

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BAC

Clone NameB6Ng01-175P01
Chromosome16 (Build37)
Map Location 28,009,752 - 28,164,511
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175P01.bB6Ng01-175P01.g
ACCGA003612GA003613
length1,1501,123
definitionB6Ng01-175P01.b B6Ng01-175P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,163,371 - 28,164,511)(28,009,752 - 28,010,872)
sequence
gaattctaaaaactgcttcatggcatcctgcgaattgctttctaatggaa
ccacttcattagctttgagttcccctgtgcattagccagtcacagataag
tggatatattatgcacaaataaaagtttgctttcacctttgagatttgat
acgttgctctacttctctcataacagaaatacaattaagagctagtacac
ttgagggactttaagaatctacgtggatacactgtaaggattttccaata
ttctttctgttgcttttgttaaagacaggacattgatctaactattagta
aacatcagaatcagttctctgagcaagtagtgcatagcttgcctacaggt
tttactgtcccgctccaaccaatcacatttggagatacttaaaatactta
aaattaaaaaaatattttaaaaaattcattgaaaaatacatgtgaaatac
tcttactgaagacgaataagcatatttcattgctatattctgtactccta
agagagtgtgtattgtatttcactgatatcagcaacacctgcaagcttaa
taaaaatgaagtatctcaaacccaccatagaactagtgactcaaaagtca
catagtaacaatatccctacttagtataaatgcacagtaccacatactac
taaatacactagaggaaacttgaactagtgtttgcatctttttagtctat
gttttggatgtggtgtaatggctttggctgttactatatcctctaaaata
tgttatctaaaaatttaatgaatagtgttattttttcttgatcattttaa
ctatttgttatctgtttatgcaaatagaaatatcaatttttcttttcagt
taaaaaaaagtgtgtctgagttgatactgtcaataagcagctgagtcagc
ctgtggaccaaatagtacagtttccaaagatgtgtagtactctctattca
tacccaacagaggaaactactttgatgttggagacagcattcaagttact
gaatcatttgttggtgatgacagaacagatagacaaagattacttattgt
tctaatttcagaaggaaacctcctgatgctaagtgcctagtgaaatatgc
ccatgttagaactaccaatttgtcctctattaataataacagctcagaga


gaattcattgaacttctcttgtaaaatggacaacataaagtagaaaagaa
caaaaatacagaaagatgaaaagaaatgtgctcgtggctaagagaggaaa
cagcagatttacaaaaacccaaaagtgcttcagaaatcagatgaggaata
gcagctggcagcttccaagagacagcaactaaaccatgtccaagttgaaa
atgaggctcaaagactagaccaaaccctgttctcattctctctcctccct
gcctttgtctctgcccgtttttctatatcacccaaatgataaaagtcaca
aaacagttgttttctagcagaaaggagagttcatcagggtacctacattg
atcctcagattcagtaattacaaggaatttgaacagatctcagcatgcat
tcctagtacactaagtttcaagcaaatactaacaatgggaagatgttagg
caagcttaatggaacccagatgtagcttagaagggtccctcccactagtg
atgcacacgatgtatttttcctccagcaacaaatactagcaacacattta
acacactgtatatcagcgattgtcttcagagactcagtagtttcttgttg
gaagctgatctcatagataatacttcatgtagctctttagaacatccaag
gtgtctaaaaatgaaagtgatattgaacatgagacctattgcctcataaa
tagtttaagcacagcaaaatatcatcacagaatgatgcagagccttctgg
aatcaagttttcaaataccagccattgatgatccttgaaaacagatctta
ctaaagacagcactctcagggtgttttatttgtttgtatgtattcttttt
tccttgaacactcagaaatggaaagtatgaaaggctgtttagcaaaggaa
agcagtatatttggaaagcaaccaaccacatagtctcttatgccctttat
tcctgacttacacatatggagatctaatcaaggactttaagattatgaac
tatccacaaccatacacttttaggagtgaataatagtagggcagtcagta
caaagtgtaaaaaacaaaaataaagctactggagacttaattatacattg
gaacccactgacaaagggaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_28163371_28164511
seq2: B6Ng01-175P01.b_47_1196 (reverse)

seq1  TCTCTGGGCTGTTATTA-TAATAGA-GACAAATGTG----TCT-ACATTG  43
      |||||| |||||||||| ||||||| |||||||  |    ||| |||| |
seq2  TCTCTGAGCTGTTATTATTAATAGAGGACAAATTGGTAGTTCTAACATGG  50

seq1  GCATATTTCACTTAAGCAACTTAAGCATCAGGAGTTTCCCTCTTGAAATA  93
      ||||||||||||  ||  |||| ||||||||||| || |||  |||||| 
seq2  GCATATTTCACT--AGGCACTT-AGCATCAGGAGGTTTCCTTCTGAAATT  97

seq1  AGAACAAATAAGT-ATCTTTGTCTATTCTG-TCTGTCATCA-CAAC-AAT  139
      ||||| ||||||| ||||||||||| |||| |||||||||| |||| |||
seq2  AGAAC-AATAAGTAATCTTTGTCTA-TCTGTTCTGTCATCACCAACAAAT  145

seq1  GATTCAGTAACTTGAATGCTGTCTCCAACATC-AAGTAGTTTCCTCTGTT  188
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATTCAGTAACTTGAATGCTGTCTCCAACATCAAAGTAGTTTCCTCTGTT  195

seq1  GGGTATGAATAGAGAGTACTACACATCTTTGGAAACTGTACTATTTGGTC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGAATAGAGAGTACTACACATCTTTGGAAACTGTACTATTTGGTC  245

seq1  CACAGGCTGACTCAGCTGCTTATTGACAGTATCAACTCAGACACAC-TTT  287
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACAGGCTGACTCAGCTGCTTATTGACAGTATCAACTCAGACACACTTTT  295

seq1  TTTTAACTGAAAAG-AAAATTGATATTTCTATTTGCATAAACAGATAACA  336
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTAACTGAAAAGAAAAATTGATATTTCTATTTGCATAAACAGATAACA  345

seq1  AATAGTTAAAATGATCAAGAAAAAATAACACTATTCATTAAATTTTTAGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTAAAATGATCAAGAAAAAATAACACTATTCATTAAATTTTTAGA  395

seq1  TAACATATTTTAGAGGATATAGTAACAGCCAAAGCCATTACACCACATCC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATTTTAGAGGATATAGTAACAGCCAAAGCCATTACACCACATCC  445

seq1  AAAACATAGACTAAAAAGATGCAAACACTAGTTCAAGTTTCCTCTAGTGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAGACTAAAAAGATGCAAACACTAGTTCAAGTTTCCTCTAGTGT  495

seq1  ATTTAGTAGTATGTGGTACTGTGCATTTATACTAAGTAGGGATATTGTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAGTATGTGGTACTGTGCATTTATACTAAGTAGGGATATTGTTA  545

seq1  CTATGTGACTTTTGAGTCACTAGTTCTATGGTGGGTTTGAGATACTTCAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGACTTTTGAGTCACTAGTTCTATGGTGGGTTTGAGATACTTCAT  595

seq1  TTTTATTAAGCTTGCAGGTGTTGCTGATATCAGTGAAATACAATACACAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAAGCTTGCAGGTGTTGCTGATATCAGTGAAATACAATACACAC  645

seq1  TCTCTTAGGAGTACAGAATATAGCAATGAAATATGCTTATTCGTCTTCAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGGAGTACAGAATATAGCAATGAAATATGCTTATTCGTCTTCAG  695

seq1  TAAGAGTATTTCACATGTATTTTTCAATGAATTTTTTAAAATATTTTTTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTATTTCACATGTATTTTTCAATGAATTTTTTAAAATATTTTTTT  745

seq1  AATTTTAAGTATTTTAAGTATCTCCAAATGTGATTGGTTGGAGCGGGACA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAGTATTTTAAGTATCTCCAAATGTGATTGGTTGGAGCGGGACA  795

seq1  GTAAAACCTGTAGGCAAGCTATGCACTACTTGCTCAGAGAACTGATTCTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCTGTAGGCAAGCTATGCACTACTTGCTCAGAGAACTGATTCTG  845

seq1  ATGTTTACTAATAGTTAGATCAATGTCCTGTCTTTAACAAAAGCAACAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACTAATAGTTAGATCAATGTCCTGTCTTTAACAAAAGCAACAGA  895

seq1  AAGAATATTGGAAAATCCTTACAGTGTATCCACGTAGATTCTTAAAGTCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTGGAAAATCCTTACAGTGTATCCACGTAGATTCTTAAAGTCC  945

seq1  CTCAAGTGTACTAGCTCTTAATTGTATTTCTGTTATGAGAGAAGTAGAGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTACTAGCTCTTAATTGTATTTCTGTTATGAGAGAAGTAGAGC  995

seq1  AACGTATCAAATCTCAAAGGTGAAAGCAAACTTTTATTTGTGCATAATAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTATCAAATCTCAAAGGTGAAAGCAAACTTTTATTTGTGCATAATAT  1045

seq1  ATCCACTTATCTGTGACTGGCTAATGCACAGGGGAACTCAAAGCTAATGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTATCTGTGACTGGCTAATGCACAGGGGAACTCAAAGCTAATGA  1095

seq1  AGTGGTTCCATTAGAAAGCAATTCGCAGGATGCCATGAAGCAGTTTTTAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCCATTAGAAAGCAATTCGCAGGATGCCATGAAGCAGTTTTTAG  1145

seq1  AATTC  1141
      |||||
seq2  AATTC  1150


seq1: chr16_28009752_28010872
seq2: B6Ng01-175P01.g_66_1188

seq1  GAATTCATTGAACTTCTCTTGTAAAATGGACAACATAAAGTAGAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAACTTCTCTTGTAAAATGGACAACATAAAGTAGAAAAGAA  50

seq1  CAAAAATACAGAAAGATGAAAAGAAATGTGCTCGTGGCTAAGAGAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACAGAAAGATGAAAAGAAATGTGCTCGTGGCTAAGAGAGGAAA  100

seq1  CAGCAGATTTACAAAAACCCAAAAGTGCTTCAGAAATCAGATGAGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATTTACAAAAACCCAAAAGTGCTTCAGAAATCAGATGAGGAATA  150

seq1  GCAGCTGGCAGCTTCCAAGAGACAGCAACTAAACCATGTCCAAGTTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGCAGCTTCCAAGAGACAGCAACTAAACCATGTCCAAGTTGAAA  200

seq1  ATGAGGCTCAAAGACTAGACCAAACCCTGTTCTCATTCTCTCTCCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTCAAAGACTAGACCAAACCCTGTTCTCATTCTCTCTCCTCCCT  250

seq1  GCCTTTGTCTCTGCCCGTTTTTCTATATCACCCAAATGATAAAAGTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTCTCTGCCCGTTTTTCTATATCACCCAAATGATAAAAGTCACA  300

seq1  AAACAGTTGTTTTCTAGCAGAAAGGAGAGTTCATCAGGGTACCTACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTGTTTTCTAGCAGAAAGGAGAGTTCATCAGGGTACCTACATTG  350

seq1  ATCCTCAGATTCAGTAATTACAAGGAATTTGAACAGATCTCAGCATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGATTCAGTAATTACAAGGAATTTGAACAGATCTCAGCATGCAT  400

seq1  TCCTAGTACACTAAGTTTCAAGCAAATACTAACAATGGGAAGATGTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTACACTAAGTTTCAAGCAAATACTAACAATGGGAAGATGTTAGG  450

seq1  CAAGCTTAATGGAACCCAGATGTAGCTTAGAAGGGTCCCTCCCACTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTAATGGAACCCAGATGTAGCTTAGAAGGGTCCCTCCCACTAGTG  500

seq1  ATGCACACGATGTATTTTTCCTCCAGCAACAAATACTAGCAACACATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACGATGTATTTTTCCTCCAGCAACAAATACTAGCAACACATTTA  550

seq1  ACACACTGTATATCAGCGATTGTCTTCAGAGACTCAGTAGTTTCTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGTATATCAGCGATTGTCTTCAGAGACTCAGTAGTTTCTTGTTG  600

seq1  GAAGCTGATCTCATAGATAATACTTCATGTAGCTCTTTAGAACATCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGATCTCATAGATAATACTTCATGTAGCTCTTTAGAACATCCAAG  650

seq1  GTGTCTAAAAATGAAAGTGATATTGAACATGAGACCTATTGCCTCATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAAAAATGAAAGTGATATTGAACATGAGACCTATTGCCTCATAAA  700

seq1  TAGTTTAAGCACAGCAAAATATCATCACAGAATGATGCAGAGCCTTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAGCACAGCAAAATATCATCACAGAATGATGCAGAGCCTTCTGG  750

seq1  AATCAAGTTTTCAAATACCAGCCATTGATGATCCTTGAAAACAGATCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTTTTCAAATACCAGCCATTGATGATCCTTGAAAACAGATCTTA  800

seq1  CTAAAGACAGCACTCTCAGGGTGTTTTATTTGTTTGTATGTATTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACAGCACTCTCAGGGTGTTTTATTTGTTTGTATGTATTCTTTTT  850

seq1  TCCTTGAACACTCAGAAATGGAAAGTATG-AAGGCTGTTTAGCAAAGGAA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTTGAACACTCAGAAATGGAAAGTATGAAAGGCTGTTTAGCAAAGGAA  900

seq1  AGCAGTATATTTGGAAAGCAACCAACCACATAGTCTCTTTATG-CCTTTA  948
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  AGCAGTATATTTGGAAAGCAACCAACCACATAGTCTC-TTATGCCCTTTA  949

seq1  TTCCTGACTTACACATATGAGGATCTAATCAAGGACTTTAAGA-TATGAA  997
      |||||||||||||||||||  |||||||||||||||||||||| ||||||
seq2  TTCCTGACTTACACATATGGAGATCTAATCAAGGACTTTAAGATTATGAA  999

seq1  CTAATCCACAACCATACACTTTTAGGAG-GAATATAAGTAGGGCAGGTCA  1046
      || ||||||||||||||||||||||||| |||||  ||||||||| ||||
seq2  CT-ATCCACAACCATACACTTTTAGGAGTGAATAATAGTAGGGCA-GTCA  1047

seq1  GAACAAAAGTGTTAAAAAACAAAAATAAAGCTACT-GAGAACTAAATATA  1095
      | || |||||| ||||||||||||||||||||||| ||||  ||| ||||
seq2  GTAC-AAAGTG-TAAAAAACAAAAATAAAGCTACTGGAGACTTAATTATA  1095

seq1  CATTGGAA-CCACAGACAAA-GGAAAAC  1121
      |||||||| |||| |||||| |||||||
seq2  CATTGGAACCCACTGACAAAGGGAAAAC  1123


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