BAC Information

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BAC

Clone NameB6Ng01-176O01
Chromosome16 (Build37)
Map Location 55,162,345 - 55,163,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176O01.bB6Ng01-176O01.g
ACCGA004299GA004300
length7941,058
definitionB6Ng01-176O01.b B6Ng01-176O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattaatttcttctttaagaatctttaacacttgatgtcctgtct
ttctactggatgtggatcttacaagttccctctccccacagtagggcatt
catctaaggtccctctctttgagtcctgagagtctctcacttctgaggtc
tctggtatgttctagtagagccccccccacccccatctactgaagttgcc
tatttccattctttctgttggccctcagagcttcagtcctgtttctctct
ggccccttcccacagtcaaaaactctaactcagaattgttcttgtctgaa
agaagggttaaacatggagaagggactgaggaaaagatctagtgacagga
ccaaagtgggatccagcgcagggggaggtccccaggcctgacactattac
tgatgctgtggtgtgcttacaaataggtacctatcatgtcagccttccaa
aaggtccaacaagcagctgaaagaatcagatgcatatatttacacccaac
caatggacagaagttggggacacctgtgattgaattaggggaaagctgga
agaagctgaggagaagggtatccctataggaagatcagcaatcttaacaa
acctggatccctgggatctctcagacactgagccaccatccaggcaccat
acactagctggtacaagatccctaacacatatacagcagagaacttccag
gtctggactcagtcagagaagatgcacctaacccttgagagacttagggc
cctgggagtcaggaggtctggtggggtgaaggtggggtagggaa

gaattccactatgtaccagatacaactgaacactacaggataagtagaag
ttaagattcctatgtaaacagaactcacagggataatgggtgatggcaac
tgttgaggttgattaccaattgattaaattgataaataccaaggagatta
gtgaagagcacccatgggcagctttctgagatgtttttctgagacattta
gttattgataagggcagattttgaacctgtgatgtcatcaagaggctggg
gtccaggtggaataaaagcaaataaggaggacacactagcacagacagtg
ctttcctgcttcctacttcccgagtgccatgaagtgagcacttgcctcca
acatgtcctcatcctctctgactttccttaggccaaagcgatggataaag
ctggccttggagtggcatctatgtttaaacagtttgggaaatttgtcacg
gcaaggaaaaactgactaaaataacaataatttaatgaacaaaggatata
gaagaagttgaaaaatcttagcttgtggtaggtggtagtaaaatgttctg
tgataagacaattagattctagaaaatagataagtgggaacaagcggata
tatggtgaaaattttttgtcatagtgagatttttgttaactagacagaaa
cctagacatttatgggaagagagaatctaaatatagaaattacctctacc
aaactggtctgaaggcatgtttgtatgacattgtcttgattactgactta
tgtgtggggccattcttctctgagtggtgccgtttatgggcaggtaaagg
cttggttgtattagaaaggtcgctggacaacccaaaggaagcaaaccagg
aaagcagcatttctcgatggtctctgcttcagtccctgtctccaagttcc
tttttctgacttcctgcttcgatggactgttgttacacgaagtgtgagat
gaaagaaacatgtttttcccgagttgctgtgctcaggtgtttatcacaca
cagaaaaaaaaaaaaggctagaacagtttagagttgtaattaaccaccca
gtccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55162345_55163408
seq2: B6Ng01-176O01.g_62_1119

seq1  GAATTCCACTATGTACCAGATACAACTGAACACTACAGGATAAGTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTATGTACCAGATACAACTGAACACTACAGGATAAGTAGAAG  50

seq1  TTAAGATTCCTATGTAAACAGAACTCACAGGGATAATGGGTGATGGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTCCTATGTAAACAGAACTCACAGGGATAATGGGTGATGGCAAC  100

seq1  TGTTGAGGTTGATTACCAATTGATTAAATTGATAAATACCAAGGAGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGTTGATTACCAATTGATTAAATTGATAAATACCAAGGAGATTA  150

seq1  GTGAAGAGCACCCATGGGCAGCTTTCTGAGATGTTTTTCTGAGACATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGCACCCATGGGCAGCTTTCTGAGATGTTTTTCTGAGACATTTA  200

seq1  GTTATTGATAAGGGCAGATTTTGAACCTGTGATGTCATCAAGAGGCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGATAAGGGCAGATTTTGAACCTGTGATGTCATCAAGAGGCTGGG  250

seq1  GTCCAGGTGGAATAAAAGCAAATAAGGAGGACACACTAGCACAGACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGTGGAATAAAAGCAAATAAGGAGGACACACTAGCACAGACAGTG  300

seq1  CTTTCCTGCTTCCTACTTCCCGAGTGCCATGAAGTGAGCACTTGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCTTCCTACTTCCCGAGTGCCATGAAGTGAGCACTTGCCTCCA  350

seq1  ACATGTCCTCATCCTCTCTGACTTTCCTTAGGCCAAAGCGATGGATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCCTCATCCTCTCTGACTTTCCTTAGGCCAAAGCGATGGATAAAG  400

seq1  CTGGCCTTGGAGTGGCATCTATGTTTAAACAGTTTGGGAAATTTGTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGGAGTGGCATCTATGTTTAAACAGTTTGGGAAATTTGTCACG  450

seq1  GCAAGGAAAAACTGACTAAAATAACAATAATTTAATGAACAAAGGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAAACTGACTAAAATAACAATAATTTAATGAACAAAGGATATA  500

seq1  GAAGAAGTTGAAAAATCTTAGCTTGTGGTAGGTGGTAGTAAAATGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTGAAAAATCTTAGCTTGTGGTAGGTGGTAGTAAAATGTTCTG  550

seq1  TGATAAGACAATTAGATTCTAGAAAATAGATAAGTGGGAACAAGCGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGACAATTAGATTCTAGAAAATAGATAAGTGGGAACAAGCGGATA  600

seq1  TATGGTGAAAATTTTTTGTCATAGTGAGATTTTTGTTAACTAGACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGAAAATTTTTTGTCATAGTGAGATTTTTGTTAACTAGACAGAAA  650

seq1  CCTAGACATTTATGGGAAGAGAGAATCTAAATATAGAAATTACCTCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACATTTATGGGAAGAGAGAATCTAAATATAGAAATTACCTCTACC  700

seq1  AAACTGGTCTGAAGGCATGTTTGTATGACATTGTCTTGATTACTGACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTCTGAAGGCATGTTTGTATGACATTGTCTTGATTACTGACTTA  750

seq1  TGTGTGGGGCCATTCTTCTCTGAGTGGTGCCGTTTATGGGCAGGT-AAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGTGGGGCCATTCTTCTCTGAGTGGTGCCGTTTATGGGCAGGTAAAGG  800

seq1  CTTGGTTGTATTAGAAAGGTCGCTGGACAACCCAAAGGAAGCAAACCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGTATTAGAAAGGTCGCTGGACAACCCAAAGGAAGCAAACCAGG  850

seq1  -AAGCAGCATTTCTCGATGGTCTCTGCTTCAGTCCCTGTCTCCAAGTTCC  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCATTTCTCGATGGTCTCTGCTTCAGTCCCTGTCTCCAAGTTCC  900

seq1  TTTTTCTGACTTCCTGCTTCGATGGACTGTTTGTTACACGGAAGTGTGAG  948
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TTTTTCTGACTTCCTGCTTCGATGGACTG-TTGTTACAC-GAAGTGTGAG  948

seq1  ATGAAAGAAACATGTTTTTTCCCGAGTTGCTGTTGCTCAGGGTGTTTATC  998
      |||||||||||||| ||||||||||||||||| |||||| ||||||||||
seq2  ATGAAAGAAACATG-TTTTTCCCGAGTTGCTG-TGCTCA-GGTGTTTATC  995

seq1  ACAACAACAGAAAAAAAAAAAAAAAGCTAGAACAGGTTTAGAAGGTGTAA  1048
      ||    ||| | |||||||||||| ||||||||| |||||| || |||||
seq2  AC----ACACAGAAAAAAAAAAAAGGCTAGAACA-GTTTAG-AGTTGTAA  1039

seq1  -TAAC--ACCAGTCCACAT  1064
       ||||   |||||||||||
seq2  TTAACCACCCAGTCCACAT  1058


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