BAC Information

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BAC

Clone NameB6Ng01-177D06
Chromosome16 (Build37)
Map Location 89,358,279 - 89,359,342
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream geneLOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177D06.bB6Ng01-177D06.g
ACCGA004536GA004537
length1,0561,140
definitionB6Ng01-177D06.b B6Ng01-177D06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacacagaatgacccaacagattgactcatgataaccttgcaga
aaattagtttaacaaagaagctgtattagtggtcttcacatttttaaaat
atttaaataaatataaacatgaatttctcagaagaaacttggggtggctt
taatcttataactgcaaagccttcttgaatacaaaatcctctttgaactt
gattgttcttcccaaggctaaacagttggttagtggtagagagtctggga
ggaaaaaacattagttctccagtgctagtcagaggggagcttcataaaaa
ttgcaattaaattaacactaagcacacatgctgaatgtgtatgctgaaca
ccagggaaacaggcatgtataaaatatgtaactgatcagccagaaaagta
cagtgcagctgcaggaagtaaatgggagcctgataaaaagtgtagagaat
ggtcaacaggcctcatgatttacacatccagaggccatgcagaataggaa
ggtcacagtcacagactgcagaaagcctcttattttctcagaaatatcta
ctattgtccatagtttattttgtttatctaaaatgtggccaaagctatga
attctaggggcttctgtgaaaacccattccaaagtacagaggacaaactt
tcttagtgaaagccttactcatgtttcggtagataagaattagtcctcta
ttcaaggtgcccagaaaacataattttgatatttatattatcttgaataa
gtatctaaatcaattttttaccctatgggttattgataaattctactgct
gtatgaagaacatacatctttcttatatgaccagagtagcgatagaatct
atatattttaggaaatggtgaccatgaaagatcctcattgtataagccca
acagaagccttgatacccattggctaaaccctctaggaaagcatggatgc
gatactttgacaactggtggagctcaggcaattctgctttcttcttggac
ttataatcttcagtatgaccgtgagtgtgcccagattgtgcctgctctaa
gaactc
gaattcatcatctgattcagagctaccaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatatttcctctttgctcctactctctctccc
cactttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacattttccactttacttctgatagactg
tcttgaatttccttagaaagttcaaggccaggcttacctcgtaaagctat
actcactggtactctcgttccccagctgaaaagttctgaattcatgcagt
tgaatccttctcaacagtctgtgttgtgggaacacttcataaccgtgacc
cgcagttctggttccggaatgagggatcttccttgcaccagtcccgagtt
ttttctcgtcccgggtttcagcaccaattgttattagacgcgttctcacg
cccggccaggaagaacaccacagaccagaatcttctgcggcaaaacttta
ttgcttacatcttcaggagccagagtgcaagaagcaagagtgtaagaagc
aagagagagagaaaacgaaaccccgtccctattaaggagaattctcttcg
cctaggacgtgtccactccctgatttgcctgcagcccattcggccgagtt
gacgtcacggggaagcagagcacatggaggtggaagacacccttcgcaca
tgccgcagattattgtaccacttagaacacacagctggtcagcggccatc
ttgtaccgcgaatgtgggcgcagctcaactgattaggaaccagataattg
ctcatgaaacacacatctaaaaaaaatgaaaaaatgactctgacaggtat
cacaacatgtatggcaaaacttgctgttcactctgcaatgattccacgca
cctgatgtcgacttgactgatctacgtggacaattccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89358279_89359342
seq2: B6Ng01-177D06.b_50_1105 (reverse)

seq1  GAGTTCCCTAGAGCAGCAACAATCTGGGCACCACTCACGGGTCATACTGA  50
      ||||| | ||||||||  |||||||||||| ||||||| |||||||||||
seq2  GAGTT-CTTAGAGCAGGCACAATCTGGGCA-CACTCAC-GGTCATACTGA  47

seq1  AGATTATAAGTTCTCAAGAAGAAAGCAGAATTGGCCCTGAGCTCCA-CAG  99
      |||||||||||   |||||||||||||||||||  ||||||||||| |||
seq2  AGATTATAAGT--CCAAGAAGAAAGCAGAATTG--CCTGAGCTCCACCAG  93

seq1  TTGTCAAAGTTATCGCATTCCATGCTTTCCCTAGAGGGTTTAGCCAATGG  149
      ||||||||| ||||||| |||||||||| |||||||||||||||||||||
seq2  TTGTCAAAG-TATCGCA-TCCATGCTTT-CCTAGAGGGTTTAGCCAATGG  140

seq1  GTATCAAGGC-TCTGTTGGGCTTATACAATGAGGATCTTTCATGGTCACC  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAGGCTTCTGTTGGGCTTATACAATGAGGATCTTTCATGGTCACC  190

seq1  ATTTCCTAAAATATATAGATTCTATCGCTACTCTGGTCATATAAGAAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAAAATATATAGATTCTATCGCTACTCTGGTCATATAAGAAAGA  240

seq1  TGTATGTTCTTCATACAGCAGTAGAATTTATCAATAACCCATAGGGTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTCTTCATACAGCAGTAGAATTTATCAATAACCCATAGGGTAAA  290

seq1  AAATTGATTTAGATACTTATTCAAGATAATATAAATATCAAAATTATGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTTAGATACTTATTCAAGATAATATAAATATCAAAATTATGTT  340

seq1  TTCTGGGCACCTTGAATAGAGGACTAATTCTTATCTACCGAAACATGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCACCTTGAATAGAGGACTAATTCTTATCTACCGAAACATGAGT  390

seq1  AAGGCTTTCACTAAGAAAGTTTGTCCTCTGTACTTTGGAATGGGTTTTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTCACTAAGAAAGTTTGTCCTCTGTACTTTGGAATGGGTTTTCA  440

seq1  CAGAAGCCCCTAGAATTCATAGCTTTGGCCACATTTTAGATAAACAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCCCTAGAATTCATAGCTTTGGCCACATTTTAGATAAACAAAAT  490

seq1  AAACTATGGACAATAGTAGATATTTCTGAGAAAATAAGAGGCTTTCTGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGGACAATAGTAGATATTTCTGAGAAAATAAGAGGCTTTCTGCA  540

seq1  GTCTGTGACTGTGACCTTCCTATTCTGCATGGCCTCTGGATGTGTAAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGACTGTGACCTTCCTATTCTGCATGGCCTCTGGATGTGTAAATC  590

seq1  ATGAGGCCTGTTGACCATTCTCTACACTTTTTATCAGGCTCCCATTTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCTGTTGACCATTCTCTACACTTTTTATCAGGCTCCCATTTACT  640

seq1  TCCTGCAGCTGCACTGTACTTTTCTGGCTGATCAGTTACATATTTTATAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGCTGCACTGTACTTTTCTGGCTGATCAGTTACATATTTTATAC  690

seq1  ATGCCTGTTTCCCTGGTGTTCAGCATACACATTCAGCATGTGTGCTTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTTTCCCTGGTGTTCAGCATACACATTCAGCATGTGTGCTTAGT  740

seq1  GTTAATTTAATTGCAATTTTTATGAAGCTCCCCTCTGACTAGCACTGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTAATTGCAATTTTTATGAAGCTCCCCTCTGACTAGCACTGGAG  790

seq1  AACTAATGTTTTTTCCTCCCAGACTCTCTACCACTAACCAACTGTTTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGTTTTTTCCTCCCAGACTCTCTACCACTAACCAACTGTTTAGC  840

seq1  CTTGGGAAGAACAATCAAGTTCAAAGAGGATTTTGTATTCAAGAAGGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAGAACAATCAAGTTCAAAGAGGATTTTGTATTCAAGAAGGCTT  890

seq1  TGCAGTTATAAGATTAAAGCCACCCCAAGTTTCTTCTGAGAAATTCATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTATAAGATTAAAGCCACCCCAAGTTTCTTCTGAGAAATTCATGT  940

seq1  TTATATTTATTTAAATATTTTAAAAATGTGAAGACCACTAATACAGCTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTATTTAAATATTTTAAAAATGTGAAGACCACTAATACAGCTTC  990

seq1  TTTGTTAAACTAATTTTCTGCAAGGTTATCATGAGTCAATCTGTTGGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAACTAATTTTCTGCAAGGTTATCATGAGTCAATCTGTTGGGTC  1040

seq1  ATTCTGTGTAGAATTC  1064
      ||||||||||||||||
seq2  ATTCTGTGTAGAATTC  1056