BAC Information

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BAC

Clone NameB6Ng01-179L08
Chromosome16 (Build37)
Map Location 4,128,657 - 4,284,685
singlet/doubletdoublet
Overlap geneCrebbp, EG436332
Upstream geneLOC100042915, LOC100042188, LOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1
Downstream geneAdcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179L08.bB6Ng01-179L08.g
ACCGA006353GA006354
length1,173532
definitionB6Ng01-179L08.b B6Ng01-179L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,128,657 - 4,129,808)(4,284,147 - 4,284,685)
sequence
gaattccactagctggagatcccaggatggctagaacaacagacagacag
acagataaggaaaaaggtaagtaaaggggagaggcccacaaataaacgat
aaatgagtcaaataagcttttcaaagagtaagcattaaatctagcaagaa
ataagcagcacagaatctattttgtctagcagtagttaaggaacaaaaat
ctaaagcaaatccaccctttatgtctaaaagcaacaaaacataaaaaaat
taaaaagagttcacttagtaaaaattagtatttattaaaatctagagata
actaggaagtcagttacaaggagtgtcaaatgtatgcaaagtacataatt
atgaatgggtcgacaactacctcccagtgaaggaaggagccttcctacaa
gctgttgccccacctagcttttagtattcacttctgtaaactgagagaaa
taggaaaggggaacctgttggacacttcttaatctatagatctatgaggt
gatcctctaaattacaaaatggcatttctctaaacttaattgtgtaatgg
cagcattagcaacagacctttcttttaaaaaaccctttcatggaattctt
ttccagaagagccctaggctacactatattatatttgactgactgacaga
tctgcccaaaattaacagatggaacaagcgagacttgaggatcccaaatg
agctttaattaatttaggtgtcacctcagtatcactgatattcaggatgt
agatgtgcctcatgtagctgacccaagctacaagcagcacacagaacagc
tgtcccacctggctgtctaaccccaggaattagaaggaaaaaaacagtgt
ccacataataaactcatccagacttctttgggtcattttcaagtttaacc
aatccacccaacccatattaatccatccattttgatgagttttctgtatg
gcaggaggtttctgtcacactattttttattttattttttttttaaaaag
aggtccagggactggtgaagattggctcagcggggtaagagcacctgact
ggcttcttctgggtgcatcctgaagaccagcctacagaaatacttaattt
atcataatcctttggcttgatgcgagcagtgtctgtattcagcctgacct
gagcagatgttcttaattcaatt
acctaccgagttaactttggttgagaaatgtttatttttacatagaacat
taaacatttaaaaatcaggctatagaacacctacatttgataatttccct
attcattgggagttttaatgcagggtgcccccccacacacacactggttt
tgttttgtttttttttttgttttgttttgttttttttttttttgtttttt
ttttttttttggttttttcgagacagggtttctctgtgtagccctggctg
tcctggaactcactttgtagaccaggctggcctcgaacttagaaatccgc
ctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgccc
ggcctttggttttgttttgagacagggtttttctgtttagccctggctgt
cctggaacatggtctgtagactaggctgacctcgtggttcagcatttaag
tgaagagattggctaagaaaacacaataggttttctgaaaaacaccatga
gacctttgtacctcatggttggtgattgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4128657_4129808
seq2: B6Ng01-179L08.b_46_1218

seq1  GAATTCCACTAGCTGGAGATCCCAGGATGGCTAGAACAACAGACAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAGCTGGAGATCCCAGGATGGCTAGAACAACAGACAGACAG  50

seq1  ACAGATAAGGAAAAAGGTAAGTAAAGGGGAGAGGCCCACAAATAAACGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAGGAAAAAGGTAAGTAAAGGGGAGAGGCCCACAAATAAACGAT  100

seq1  AAATGAGTCAAATAAGCTTTTCAAAGAGTAAGCATTAAATCTAGCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCAAATAAGCTTTTCAAAGAGTAAGCATTAAATCTAGCAAGAA  150

seq1  ATAAGCAGCACAGAATCTATTTTGTCTAGCAGTAGTTAAGGAACAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGCACAGAATCTATTTTGTCTAGCAGTAGTTAAGGAACAAAAAT  200

seq1  CTAAAGCAAATCCACCCTTTATGTCTAAAAGCAACAAAACATAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAAATCCACCCTTTATGTCTAAAAGCAACAAAACATAAAAAAAT  250

seq1  TAAAAAGAGTTCACTTAGTAAAAATTAGTATTTATTAAAATCTAGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGTTCACTTAGTAAAAATTAGTATTTATTAAAATCTAGAGATA  300

seq1  ACTAGGAAGTCAGTTACAAGGAGTGTCAAATGTATGCAAAGTACATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAGTCAGTTACAAGGAGTGTCAAATGTATGCAAAGTACATAATT  350

seq1  ATGAATGGGTCGACAACTACCTCCCAGTGAAGGAAGGAGCCTTCCTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGGTCGACAACTACCTCCCAGTGAAGGAAGGAGCCTTCCTACAA  400

seq1  GCTGTTGCCCCACCTAGCTTTTAGTATTCACTTCTGTAAACTGAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGCCCCACCTAGCTTTTAGTATTCACTTCTGTAAACTGAGAGAAA  450

seq1  TAGGAAAGGGGAACCTGTTGGACACTTCTTAATCTATAGATCTATGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGGGGAACCTGTTGGACACTTCTTAATCTATAGATCTATGAGGT  500

seq1  GATCCTCTAAATTACAAAATGGCATTTCTCTAAACTTAATTGTGTAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTAAATTACAAAATGGCATTTCTCTAAACTTAATTGTGTAATGG  550

seq1  CAGCATTAGCAACAGACCTTTCTTTTAAAAAACCCTTTCATGGAATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAGCAACAGACCTTTCTTTTAAAAAACCCTTTCATGGAATTCTT  600

seq1  TTCCAGAAGAGCCCTAGGCTACACTATATTATATTTGACTGACTGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGAGCCCTAGGCTACACTATATTATATTTGACTGACTGACAGA  650

seq1  TCTGCCCAAAATTAACAGATGGAACAAGCGAGACTTGAGGATCCCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAAAATTAACAGATGGAACAAGCGAGACTTGAGGATCCCAAATG  700

seq1  AGCTTTAATTAATTTAGGTGTCACCTCAGTATCACTGATATTCAGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATTAATTTAGGTGTCACCTCAGTATCACTGATATTCAGGATGT  750

seq1  AGATGTGCCTCATGTAGCTGACCCAAAGCTACAAGCAGCACACAGAACAG  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGATGTGCCTCATGTAGCTGACCC-AAGCTACAAGCAGCACACAGAACAG  799

seq1  CTGTCCCACCTGGCTGTCTAACCCCAGGAATTAGAAGGAAAAAAACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCACCTGGCTGTCTAACCCCAGGAATTAGAAGGAAAAAAACAGTG  849

seq1  TCCACATAATAAACTCATCCAGACTTCTTT-GGTCA-TTTCAAGTTTAAC  898
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TCCACATAATAAACTCATCCAGACTTCTTTGGGTCATTTTCAAGTTTAAC  899

seq1  CAATCCACCC-ACCCATA-TAATCCATCCA-TTTGATGAGTTTTCTGTAT  945
      |||||||||| ||||||| ||||||||||| |||||||||||||||||||
seq2  CAATCCACCCAACCCATATTAATCCATCCATTTTGATGAGTTTTCTGTAT  949

seq1  GGCAGAGGTTTTCTGTCACACTATTTTTTA-TTTATTTTTTTT---AAAA  991
      |||||  | ||||||||||||||||||||| ||||||||||||   ||||
seq2  GGCAGGAGGTTTCTGTCACACTATTTTTTATTTTATTTTTTTTTTAAAAA  999

seq1  GAGGTCCAGGGACTGGTG-AGA-TGGCTCAGC-GGGTAAGAGCA-CTGAC  1037
      |||||||||||||||||| ||| ||||||||| ||||||||||| |||||
seq2  GAGGTCCAGGGACTGGTGAAGATTGGCTCAGCGGGGTAAGAGCACCTGAC  1049

seq1  TG--CTCTTCT-GGTGCAT-CTGAAGA-CAG-CTACAG-AATACTT-ATT  1079
      ||   |||||| ||||||| ||||||| ||| |||||| ||||||| |||
seq2  TGGCTTCTTCTGGGTGCATCCTGAAGACCAGCCTACAGAAATACTTAATT  1099

seq1  TATCATAAATCTTTGGGCTGGAGCGAGCAGGGTCTG-AATCAGCCTGACC  1128
      ||||||||  ||||||  ||  |||||||| ||||| | |||||||||||
seq2  TATCATAATCCTTTGGCTTGATGCGAGCAGTGTCTGTATTCAGCCTGACC  1149

seq1  TGAGCAGAGGTCCTAAATTCAATT  1152
      |||||||| || || |||||||||
seq2  TGAGCAGATGTTCTTAATTCAATT  1173

seq1: chr16_4284147_4284685
seq2: B6Ng01-179L08.g_61_598 (reverse)

seq1  TCTGCAATCACCAACCATGAGGTACAAAGGTCTCATGGTGTTTTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATCACCAACCATGAGGTACAAAGGTCTCATGGTGTTTTTCAGAA  50

seq1  AACCTATTGTGTTTTCTTAGCCAATCTCTTCACTTAAATGCTGAACCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATTGTGTTTTCTTAGCCAATCTCTTCACTTAAATGCTGAACCACG  100

seq1  AGGTCAGCCTAGTCTACAGACCATGTTCCAGGACAGCCAGGGCTATACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTCAGCCTAGTCTACAGACCATGTTCCAGGACAGCCAGGGCTAAACAG  150

seq1  AAAAACCCTGTCTCAAAACAAAACCAAAGGCCGGGCGTGGTGGCGCACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTGTCTCAAAACAAAACCAAAGGCCGGGCGTGGTGGCGCACGC  200

seq1  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTAAGTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTAAGTTCGA  250

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  300

seq1  GAAACCCTGTCTCGAAAAAACCAAAAAAAAAAAAAAAACAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTCTCGAAAAAACCAAAAAAAAAAAAAAAACAAAAAAAAAAA  350

seq1  AAACAAAACAAAACAAAAAAAAAAACAAAACAAAACCAGTGTGTGTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAAAAAAAAACAAAACAAAACCAGTGTGTGTGTGG  400

seq1  GGGGGCACCCTGCATTAAAACTCCCAATGAATAGGGAAATTATCAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCACCCTGCATTAAAACTCCCAATGAATAGGGAAATTATCAAATGT  450

seq1  AGGTGTTCTATAGCCTGATTTTTAAATGTTTAATGTTCTATGTAAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCTATAGCCTGATTTTTAAATGTTTAATGTTCTATGTAAAAATA  500

seq1  AACATTTCTCAACCAAAGTTAACTGCGGTAGGTGAATTC  539
      |||||||||||||||||||||||| ||||||||||||||
seq2  AACATTTCTCAACCAAAGTTAACT-CGGTAGGTGAATTC  538