BAC Information

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BAC

Clone NameB6Ng01-182M12
Chromosome16 (Build37)
Map Location 88,627,794 - 88,723,427
singlet/doubletdoublet
Overlap gene2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312
Downstream geneKrtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182M12.bB6Ng01-182M12.g
ACCGA008581GA008582
length1,1921,099
definitionB6Ng01-182M12.b B6Ng01-182M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,627,794 - 88,628,993)(88,722,315 - 88,723,427)
sequence
gaattcctacaagacgaagagctgtggacttctgagcagcagttattaga
cataatagcaatagagagacagacaaccaggcctcgattaaactgcagag
aatacgctgttgaagtatgcttggtacctgctagacatctttatatacct
cggtgctgggtgttggttctctctatagtccaccctccttgcatgtcact
agactgccacccagttgcttactaagcagtcctcccactaactcataaaa
gatacatcatcttccaaatgattatcatttcaaaaccaatctggtccttc
gtattcaagttctcattagaagtaattttcctttaacagtcttaacagtt
tcttaaagttactgtcaaaaacccattagtcctttggtatagttggtgag
aatttatgtaaagccacataagaataaaataaaactatatatatacccaa
atatgtaacacattggaaaaagtgataaatattgaaaaaaattgatccga
aacacataatacttctttgtagagttaacctgaattaggaacacactcca
cttttgggaagactaatttagatatggctttcaagtgtatctttccaagt
aaggaatggtgacctgaaaatacttgctactttttatgaagatccacacc
caaagaatatgtgtcaccattctatcttttattagaatgaaactgaagat
gttagcatacatcttttgatagatgttatgtacacagaaagccaggtctc
ttttggtgcctacctctgtgagtctcagaataatgttgtaaataatttgt
gtagtatatttccagccaatttttctataattctacaaagagtattttct
caaacacgaaatatttgtaaataaattatcttttccatgtgttttagttt
cttttcccttatagtcatttagagccacaatgtatagttggaaaaggaag
tgaaaagtcccagtttattctgctaaacagaatcatagttgtagcttggt
tgtgtcactgtactctacaaatcaatctaggccatgtcatttggttaagc
ggtctctcagtgttcttgagatttcaatttcaggagagtgctgctacagc
acatgtctcaggaatacccactacttgcatctgttgggcttggaacgatg
atcctggacagttttcttgaccatattttcagtccttacctt
gaattcttatttatctcttctgaaatatgcattcaattattgataagcaa
gtcattctgctctgattttgtgctgtgagtgtgtgcagcagatagattct
ggtctcctctgtcctcctcttccctccccttgtaataggaaatctaacca
atgagctaaagttcttgtcttagctttctgcatggtttacaacatgaact
cttgacctcagtaagcaatataattgacaatggccttgggggacattagg
ttgtaattctgtatcactggcccctctacgcatgaattagtttactcttg
gtaatgttccaggaacctcaactttgcatttcatcttcatcctccacaaa
gtaaagagccttgcagtaaagggcaagtttcaccatttccagggtctcag
cagactttcaatgcacttgttaaaatgatgaatgcagacattttccatat
taacatcatgattctcccttgctgataattggaactaagtgttattattc
tgtgaactgtaagattttgttgcctggttcccagaaaagaaccattaaca
accgaacatcttgtttcgagaagtgacagaaatggcaggtggcgctcaga
gaagtaatacttgttattagtcatgaaagcggccaccatcatacactaca
gaaaaaaaatgagtggtttgtctttctttttttttaaatttgcttatttt
ttattaaatattttctttatatacatttcaagtgctatcccaaaaagttc
cctataccctccccctgccctgctcccctacccacccactcctgcttttt
agccctgacattcccctgtactggggcatataaagtttgcaataccaaag
gggcctcacttcccaatgatggctgactaggccaccttctgctacatagg
cagctagagatatgagctctggggatactggttagttcatatgttgttcc
acctataggttgcagacccctttcagctcttgggtgctttctctagctct
ccatgggggccctgtgttcatcttatagattactgtgagcattaaaacat
ggatttatgaaatctgacatggatgtatcttgagctatcatctagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88627794_88628993
seq2: B6Ng01-182M12.b_44_1235

seq1  GAATTCCTACAAGACGAAGAGCTGTGGACTTCTGAGCAGCAGTTATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAAGACGAAGAGCTGTGGACTTCTGAGCAGCAGTTATTAGA  50

seq1  CATAATAGCAATAGAGAGACAGACAACCAGGCCTCGATTAAACTGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGCAATAGAGAGACAGACAACCAGGCCTCGATTAAACTGCAGAG  100

seq1  AATACGCTGTTGAAGTATGCTTGGTACCTGCTAGACATCTTTATATACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGCTGTTGAAGTATGCTTGGTACCTGCTAGACATCTTTATATACCT  150

seq1  CGGTGCTGGGTGTTGGTTCTCTCTATAGTCCACCCTCCTTGCATGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTGGGTGTTGGTTCTCTCTATAGTCCACCCTCCTTGCATGTCACT  200

seq1  AGACTGCCACCCAGTTGCTTACTAAGCAGTCCTCCCACTAACTCATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCACCCAGTTGCTTACTAAGCAGTCCTCCCACTAACTCATAAAA  250

seq1  GATACATCATCTTCCAAATGATTATCATTTCAAAACCAATCTGGTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATCATCTTCCAAATGATTATCATTTCAAAACCAATCTGGTCCTTC  300

seq1  GTATTCAAGTTCTCATTAGAAGTAATTTTCCTTTAACAGTCTTAACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAAGTTCTCATTAGAAGTAATTTTCCTTTAACAGTCTTAACAGTT  350

seq1  TCTTAAAGTTACTGTCAAAAACCCATTAGTCCTTTGGTATAGTTGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGTTACTGTCAAAAACCCATTAGTCCTTTGGTATAGTTGGTGAG  400

seq1  AATTTATGTAAAGCCACATAAGAATAAAATAAAACTATATATATACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTAAAGCCACATAAGAATAAAATAAAACTATATATATACCCAA  450

seq1  ATATGTAACACATTGGAAAAAGTGATAAATATTGAAAAAAATTGATCCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAACACATTGGAAAAAGTGATAAATATTGAAAAAAATTGATCCGA  500

seq1  AACACATAATACTTCTTTGTAGAGTTAACCTGAATTAGGAACACACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAATACTTCTTTGTAGAGTTAACCTGAATTAGGAACACACTCCA  550

seq1  CTTTTGGGAAGACTAATTTAGATATGGCTTTCAAGTGTATCTTTCCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGAAGACTAATTTAGATATGGCTTTCAAGTGTATCTTTCCAAGT  600

seq1  AAGGAATGGTGACCTGAAAATACTTGCTACTTTTTATGAAGATCCACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGTGACCTGAAAATACTTGCTACTTTTTATGAAGATCCACACC  650

seq1  CAAAGAATATGTGTCACCATTCTATCTTTTATTAGAATGAAACTGAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATATGTGTCACCATTCTATCTTTTATTAGAATGAAACTGAAGAT  700

seq1  GTTAGCATACATCTTTTGATAGATGTTATGTACACAGAAAGCCAGGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATACATCTTTTGATAGATGTTATGTACACAGAAAGCCAGGTCTC  750

seq1  TTTTGGTGCCTACCTCTGTGAGTCTCAGAATAATGTTGTAAATAATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGCCTACCTCTGTGAGTCTCAGAATAATGTTGTAAATAATTTGT  800

seq1  GTAGTATATTTCCAGCCAATTTTTCTATAATTCTACAAAGAGTATTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATATTTCCAGCCAATTTTTCTATAATTCTACAAAGAGTATTTTCT  850

seq1  CAAACACGAAATATTTGTAAATAAATTATCTTTTCCATGTGTTTTAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACGAAATATTTGTAAATAAATTATCTTTTCCATGTGTTTTAGTTT  900

seq1  CTTTTCCCTTATAGTCATTTAGAGCCACAATGTATAGTTGG-AAAGGAAG  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTTCCCTTATAGTCATTTAGAGCCACAATGTATAGTTGGAAAAGGAAG  950

seq1  TGAAAAGTCCCAGTTTATTCTGCTAAACAGAATCATAGTTGTAGCTTGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTCCCAGTTTATTCTGCTAAACAGAATCATAGTTGTAGCTTGGT  1000

seq1  TGTGTCACTGTACTCTACAAATCAATCTAGGCCATGTCATTTGGTTAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACTGTACTCTACAAATCAATCTAGGCCATGTCATTTGGTTAAGC  1050

seq1  GGTCTCTCAGTGTTCCTTGAAGAATTTCATTTCAGGAGAGTGCTTGCTTA  1099
      |||||||||||||| |||| ||| ||  ||||||||||||||| ||| ||
seq2  GGTCTCTCAGTGTT-CTTG-AGATTTCAATTTCAGGAGAGTGC-TGC-TA  1096

seq1  CAGCACATGTCTCCAGGAATACCCACTTACTGGCATCTGTTGGGCTGGGA  1149
      |||||||||||| ||||||||||||| |||| |||||||||||||| || 
seq2  CAGCACATGTCT-CAGGAATACCCAC-TACTTGCATCTGTTGGGCTTGG-  1143

seq1  AAACGATAGAGCCTGGACAGTTTTCTTTGACCCATA-TTTCAGT-CTTAC  1197
       |||||| || |||||||||||||| |||| ||||| ||||||| |||||
seq2  -AACGAT-GATCCTGGACAGTTTTC-TTGA-CCATATTTTCAGTCCTTAC  1189

seq1  CTT  1200
      |||
seq2  CTT  1192

seq1: chr16_88722315_88723427
seq2: B6Ng01-182M12.g_61_1159 (reverse)

seq1  CTCACTAAGGATGATAGCTTCCAGATACATTCATTTGTCCAAGAATTTCA  50
      |||||||  ||||||||| || |||||||| ||  ||||  || ||||||
seq2  CTCACTA--GATGATAGC-TCAAGATACATCCA--TGTC--AG-ATTTCA  42

seq1  TAAATCCATTGTTTTTAATGCTCACAGTAATCTATAAGATGGAACACAGG  100
      |||||||||   |||||||||||||||||||||||||||| |||||||||
seq2  TAAATCCAT--GTTTTAATGCTCACAGTAATCTATAAGAT-GAACACAGG  89

seq1  GCCCCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAGCTG-AAGGGGTCT  149
      |||||| |||||| ||||||||||||||||||| |||||| |||||||||
seq2  GCCCCC-ATGGAG-AGCTAGAGAAAGCACCCAA-GAGCTGAAAGGGGTCT  136

seq1  GCAACCTTATAGGTGGAACAACAATATGAACTAACCAGTATCCCCAGAGC  199
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAACC-TATAGGTGGAACAAC-ATATGAACTAACCAGTATCCCCAGAGC  184

seq1  TCATATCTCTAGCTGCCTATGTAGCAGAAGGTGGCCTAGTCAGCCATCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTCTAGCTGCCTATGTAGCAGAAGGTGGCCTAGTCAGCCATCAT  234

seq1  TGGGAAGTGAGGCCCC-TTGGTATTGCAAACTTTATATGCCCCAGTACAG  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGAGGCCCCTTTGGTATTGCAAACTTTATATGCCCCAGTACAG  284

seq1  GGGAATGTCAGGGCTAAAAAGCAGGAGTGGGTGGGTAGGGGAGCAGGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTCAGGGCTAAAAAGCAGGAGTGGGTGGGTAGGGGAGCAGGGCA  334

seq1  GGGGGAGGGTATAGGGAACTTTTTGGGATAGCACTTGAAATGTATATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGTATAGGGAACTTTTTGGGATAGCACTTGAAATGTATATAAA  384

seq1  GAAAATATTTAATAAAAAATAAGCAAATTTAAAAAAAAAGAAAGACAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTAATAAAAAATAAGCAAATTTAAAAAAAAAGAAAGACAAAC  434

seq1  CACTCATTTTTTTTCTGTAGTGTATGATGGTGGCCGCTTTCATGACTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTTTTTTTCTGTAGTGTATGATGGTGGCCGCTTTCATGACTAAT  484

seq1  AACAAGTATTACTTCTCTGAGCGCCACCTGCCATTTCTGTCACTTCTCGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTATTACTTCTCTGAGCGCCACCTGCCATTTCTGTCACTTCTCGA  534

seq1  AACAAGATGTTCGGTTGTTAATGGTTCTTTTCTGGGAACCAGGCAACAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATGTTCGGTTGTTAATGGTTCTTTTCTGGGAACCAGGCAACAAA  584

seq1  ATCTTACAGTTCACAGAATAATAACACTTAGTTCCAATTATCAGCAAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAGTTCACAGAATAATAACACTTAGTTCCAATTATCAGCAAGGG  634

seq1  AGAATCATGATGTTAATATGGAAAATGTCTGCATTCATCATTTTAACAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATGATGTTAATATGGAAAATGTCTGCATTCATCATTTTAACAAG  684

seq1  TGCATTGAAAGTCTGCTGAGACCCTGGAAATGGTGAAACTTGCCCTTTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAAAGTCTGCTGAGACCCTGGAAATGGTGAAACTTGCCCTTTAC  734

seq1  TGCAAGGCTCTTTACTTTGTGGAGGATGAAGATGAAATGCAAAGTTGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCTCTTTACTTTGTGGAGGATGAAGATGAAATGCAAAGTTGAGG  784

seq1  TTCCTGGAACATTACCAAGAGTAAACTAATTCATGCGTAGAGGGGCCAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAACATTACCAAGAGTAAACTAATTCATGCGTAGAGGGGCCAGT  834

seq1  GATACAGAATTACAACCTAATGTCCCCCAAGGCCATTGTCAATTATATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAATTACAACCTAATGTCCCCCAAGGCCATTGTCAATTATATTG  884

seq1  CTTACTGAGGTCAAGAGTTCATGTTGTAAACCATGCAGAAAGCTAAGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAGGTCAAGAGTTCATGTTGTAAACCATGCAGAAAGCTAAGACA  934

seq1  AGAACTTTAGCTCATTGGTTAGATTTCCTATTACAAGGGGAGGGAAGAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTAGCTCATTGGTTAGATTTCCTATTACAAGGGGAGGGAAGAGG  984

seq1  AGGACAGAGGAGACCAGAATCTATCTGCTGCACACACTCACAGCACAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAGGAGACCAGAATCTATCTGCTGCACACACTCACAGCACAAAA  1034

seq1  TCAGAGCAGAATGACTTGCTTATCAATAATTGAATGCATATTTCAGAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAGAATGACTTGCTTATCAATAATTGAATGCATATTTCAGAAGA  1084

seq1  GATAAATAAGAATTC  1113
      |||||||||||||||
seq2  GATAAATAAGAATTC  1099