BAC Information

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BAC

Clone NameB6Ng01-183O01
Chromosome16 (Build37)
Map Location 63,782,436 - 63,869,371
singlet/doubletdoublet
Overlap geneEpha3
Upstream geneNsun3, Arl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183O01.bB6Ng01-183O01.g
ACCGA009393GA009394
length1,0811,189
definitionB6Ng01-183O01.b B6Ng01-183O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,868,295 - 63,869,371)(63,782,436 - 63,783,604)
sequence
gaattcaattcaggagcctcatttcctctcactgtatatgatcttctggg
gaaattaaatttctgtcttgaaattaagctacttataattaccactcacc
tcctaagcttcagttcatgctcttacttccctcagaacttctggctcgat
cttaacgtgtcctaaaccgaacccagcgttcccaatacttctgctttccc
atcagttcactgcagcactggccgggtaaccacataacatgacttctccg
gcctctccttctagtcactgatttactgagatccaacttgcagaatttgt
acttaacattcctaccaccaccaacatcaacaatggtgccactcagcaat
actgttacaaggtgtgcgttggaaggaaataaatctccatgccaaaaaga
tacctgcatgctcatgcttattctcagtagccaagacatagactcaactg
agatgtcatgtaatgaatgagtgcattttaaaaaatgtgttagataccca
taataggataatatttaaatccaaaacgactgaaatcgcgttgtttgtga
tgatgtggacagaaaaagaaagcattctgctaagtgaaatgagacaggaa
cagaaatgcagcaccgcagattgttacccttttgtggaaacaagaaggtt
attgcatagaagtagaaagtaaggaggctggcataggaggcagtaatagg
gcagaatgagaaggaatataaggggaaccggaagacctaagggtgaaggg
attctaatatacaacattaccaagttcagtgcatggagctaattgtctct
ttcaagataaccagagaagggagtgaacatttccaacacagaactgatga
tatatgaaaagatagaaattataagtggcatatattgatggctgaatata
atattgtagtccacaatacttgtgtgcatgtttgtttgtgtgtgtgtgca
cctgtgtgtctatgtgtgtgtgcacctgtgtgagtctgtgtgtgtgtgtt
tgcatatgtgtttttatgtgtgtgaatgtgtggtgtgcaccatgtatgtg
ccatgcctggtgtctctgtgttgttgcgaac

gaattcctatccagcagaattgatattcgagaaatagggcaccagggcta
gagagcattggttcttgtagagaacctaggctgagttcccaggatccaca
ctgtggctcaagaacatccctctacaaatccaggggatccaatgcctctt
gtcctctgtagacactgcatgcacatgatgcatagacagacatgaaggga
aatcatgcatgcaggcaaaattccaacatacataaaaatgaaatattcaa
tgaaggtatcatgctaagatggaacaatattaagtattttcaactccatc
ttcaatttgaatttagtttttttttctaaatgtggatatgaaagcacgag
gaagaaattatttcttttcagtatagaggcttcatatacacagggaaata
cttctatattcaatttaaaactataaataaaacgtttccccacccccacc
ccccgtgtgtagccctggcttcctggacttgctttgtgaaccaggctggc
ctcaaactcacagttatcatctgcctctggtccctactgctggattttaa
gtcatgtgccaccacactcagcaataaaaagttttctattattcaataat
cacacatggaaagaagtcaaataagtagggtaatgaattatcatgtaata
tgtaagaactgaaaaaaaaaagaaaggcaacctgatgtgggcatttatca
aagatttttctctacctttcttttgatatattgctaagtggctatacttt
ctggagaataaattttcctttaatattagggagcaggacaatgaggctat
catatttccaacccttagaagaatgtttcaaggtaaaattgtccaataaa
aaatgtaatttttagaattgagtgtaactgcttgaaatgatgggaagaaa
attccatgcacatgggcttaacatgtctagactgaaaactgctaagatga
gcatttacagaattatttacaaatgggccaacgactttagaaattaatgc
agagcagtgacaggcaggcatccctgcacattcagctgttgagaccatgt
aattttccctgctcttgattaataggttcacaggcgctgccaggttctta
gcaattgcatatactggtacagacctctcacagtgacgaatgaatttacc
tggtgcgacatgtgatcctgtgcactataggcttttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_63868295_63869371
seq2: B6Ng01-183O01.b_44_1124 (reverse)

seq1  GTTCGCACAAACACAGAGACA-CAGACAT-GCACATACAT-GTGCACA-C  46
      |||||||  |||||||||||| ||| ||| |||||||||| ||||||| |
seq2  GTTCGCAACAACACAGAGACACCAGGCATGGCACATACATGGTGCACACC  50

seq1  ACACATTCACACACATAAAAACACATATGCAAACACACACACACAGACTC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCACACACATAAAAACACATATGCAAACACACACACACAGACTC  100

seq1  ACACAGGTGCACACACACATAGACACACAGGTGCACACACACACAAACAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGCACACACACATAGACACACAGGTGCACACACACACAAACAA  150

seq1  ACATGCACACAAGTATTGTGGACTACAATATTATATTCAGCCATCAATAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACAAGTATTGTGGACTACAATATTATATTCAGCCATCAATAT  200

seq1  ATGCCACTTATAATTTCTATCTTTTCATATATCATCAGTTCTGTGTTGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTTATAATTTCTATCTTTTCATATATCATCAGTTCTGTGTTGGA  250

seq1  AATGTTCACTCCCTTCTCTGGTTATCTTGAAAGAGACAATTAGCTCCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCACTCCCTTCTCTGGTTATCTTGAAAGAGACAATTAGCTCCATG  300

seq1  CACTGAACTTGGTAATGTTGTATATTAGAATCCCTTCACCCTTAGGTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTTGGTAATGTTGTATATTAGAATCCCTTCACCCTTAGGTCTT  350

seq1  CCGGTTCCCCTTATATTCCTTCTCATTCTGCCCTATTACTGCCTCCTATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTCCCCTTATATTCCTTCTCATTCTGCCCTATTACTGCCTCCTATG  400

seq1  CCAGCCTCCTTACTTTCTACTTCTATGCAATAACCTTCTTGTTTCCACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCTTACTTTCTACTTCTATGCAATAACCTTCTTGTTTCCACAA  450

seq1  AAGGGTAACAATCTGCGGTGCTGCATTTCTGTTCCTGTCTCATTTCACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAACAATCTGCGGTGCTGCATTTCTGTTCCTGTCTCATTTCACTT  500

seq1  AGCAGAATGCTTTCTTTTTCTGTCCACATCATCACAAACAACGCGATTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATGCTTTCTTTTTCTGTCCACATCATCACAAACAACGCGATTTC  550

seq1  AGTCGTTTTGGATTTAAATATTATCCTATTATGGGTATCTAACACATTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTTTTGGATTTAAATATTATCCTATTATGGGTATCTAACACATTTT  600

seq1  TTAAAATGCACTCATTCATTACATGACATCTCAGTTGAGTCTATGTCTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGCACTCATTCATTACATGACATCTCAGTTGAGTCTATGTCTTG  650

seq1  GCTACTGAGAATAAGCATGAGCATGCAGGTATCTTTTTGGCATGGAGATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAGAATAAGCATGAGCATGCAGGTATCTTTTTGGCATGGAGATT  700

seq1  TATTTCCTTCCAACGCACACCTTGTAACAGTATTGCTGAGTGGCACCATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTCCAACGCACACCTTGTAACAGTATTGCTGAGTGGCACCATT  750

seq1  GTTGATGTTGGTGGTGGTAGGAATGTTAAGTACAAATTCTGCAAGTTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTGGTGGTGGTAGGAATGTTAAGTACAAATTCTGCAAGTTGGA  800

seq1  TCTCAGTAAATCAGTGACTAGAAGGAGAGGCCGGAGAAGTCATGTTATGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAAATCAGTGACTAGAAGGAGAGGCCGGAGAAGTCATGTTATGT  850

seq1  GGTTACCCGGCCAGTGCTGCAGTGAACTGATGGGAAAGCAGAAGTATTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCCGGCCAGTGCTGCAGTGAACTGATGGGAAAGCAGAAGTATTGG  900

seq1  GAACGCTGGGTTCGGTTTAGGACACGTTAAGATCGAGCCAGAAGTTCTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGGGTTCGGTTTAGGACACGTTAAGATCGAGCCAGAAGTTCTGA  950

seq1  GGGAAGTAAGAGCATGAACTGAAGCTTAGGAGGTGAGTGGTAATTATAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAAGAGCATGAACTGAAGCTTAGGAGGTGAGTGGTAATTATAAG  1000

seq1  TAGCTTAATTTCAAGACAGAAATTTAATTTCCCCAGAAGATCATATACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAATTTCAAGACAGAAATTTAATTTCCCCAGAAGATCATATACAG  1050

seq1  TGAGAGGAAATGAGGCTCCTGAATTGAATTC  1077
      |||||||||||||||||||||||||||||||
seq2  TGAGAGGAAATGAGGCTCCTGAATTGAATTC  1081


seq1: chr16_63782436_63783604
seq2: B6Ng01-183O01.g_65_1253

seq1  GAATTCCTATCCAGCAGAATTGATATTCGAGAAATAGGGCACCAGGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCCAGCAGAATTGATATTCGAGAAATAGGGCACCAGGGCTA  50

seq1  GAGAGCATTGGTTCTTGTAGAGAACCTAGGCTGAGTTCCCAGGATCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATTGGTTCTTGTAGAGAACCTAGGCTGAGTTCCCAGGATCCACA  100

seq1  CTGTGGCTCAAGAACATCCCTCTACAAATCCAGGGGATCCAATGCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCAAGAACATCCCTCTACAAATCCAGGGGATCCAATGCCTCTT  150

seq1  GTCCTCTGTAGACACTGCATGCACATGATGCATAGACAGACATGAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGTAGACACTGCATGCACATGATGCATAGACAGACATGAAGGGA  200

seq1  AATCATGCATGCAGGCAAAATTCCAACATACATAAAAATGAAATATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGCATGCAGGCAAAATTCCAACATACATAAAAATGAAATATTCAA  250

seq1  TGAAGGTATCATGCTAAGATGGAACAATATTAAGTATTTTCAACTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTATCATGCTAAGATGGAACAATATTAAGTATTTTCAACTCCATC  300

seq1  TTCAATTTGAATTTAGTTTTTTTTTCTAAATGTGGATATGAAAGCACGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTGAATTTAGTTTTTTTTTCTAAATGTGGATATGAAAGCACGAG  350

seq1  GAAGAAATTATTTCTTTTCAGTATAGAGGCTTCATATACACAGGGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTATTTCTTTTCAGTATAGAGGCTTCATATACACAGGGAAATA  400

seq1  CTTCTATATTCAATTTAAAACTATAAATAAAACGTTTCCCCACCCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATATTCAATTTAAAACTATAAATAAAACGTTTCCCCACCCCCACC  450

seq1  CCCCGTGTGTAGCCCTGGCTTCCTGGACTTGCTTTGTGAACCAGGCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGTGTAGCCCTGGCTTCCTGGACTTGCTTTGTGAACCAGGCTGGC  500

seq1  CTCAAACTCACAGTTATCATCTGCCTCTGGTCCCTACTGCTGGATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCACAGTTATCATCTGCCTCTGGTCCCTACTGCTGGATTTTAA  550

seq1  GTCATGTGCCACCACACTCAGCAATAAAAAGTTTTCTATTATTCAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGCCACCACACTCAGCAATAAAAAGTTTTCTATTATTCAATAAT  600

seq1  CACACATGGAAAGAAGTCAAATAAGTAGGGTAATGAATTATCATGTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGAAAGAAGTCAAATAAGTAGGGTAATGAATTATCATGTAATA  650

seq1  TGTAAGAACTGAAAAAAAAAAGAAAGGCAACCTGATGTGGGCATTTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAACTGAAAAAAAAAAGAAAGGCAACCTGATGTGGGCATTTATCA  700

seq1  AAGATTTTTCTCTACCTTTCTTTTGATATATTGCTAAGTGGCTATACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTCTCTACCTTTCTTTTGATATATTGCTAAGTGGCTATACTTT  750

seq1  CTGGAGAATAAATTTTCCTTTAATATTAGGGAGCAGGACAATGAGGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATAAATTTTCCTTTAATATTAGGGAGCAGGACAATGAGGCTAT  800

seq1  CATATTTCCAACCCTTAGAAGAATG-TTCAAGGTAAAATTGTCCAATAAA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATATTTCCAACCCTTAGAAGAATGTTTCAAGGTAAAATTGTCCAATAAA  850

seq1  AAATGTAA-TTTTAGAATTGAGTGTAACTGCTTGAAATGATGGGAAGAAA  898
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATTTTTAGAATTGAGTGTAACTGCTTGAAATGATGGGAAGAAA  900

seq1  ATTCCATGCACATGGGCTTAACATGTCTAGACTGAAAACTGCTAAGATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGCACATGGGCTTAACATGTCTAGACTGAAAACTGCTAAGATGA  950

seq1  GCATTTACAGAATTA-TTACAAAT-GGCCAACGAC-TTAGAAATTAATGC  995
      ||||||||||||||| |||||||| |||||||||| ||||||||||||||
seq2  GCATTTACAGAATTATTTACAAATGGGCCAACGACTTTAGAAATTAATGC  1000

seq1  AGAGCAGTGACA-GCA-GCA-CCCTGCACA-TCAGCTG-TGAGACCCATG  1040
      |||||||||||| ||| ||| ||||||||| ||||||| ||||| |||||
seq2  AGAGCAGTGACAGGCAGGCATCCCTGCACATTCAGCTGTTGAGA-CCATG  1049

seq1  TAATTT--CCTGCTC-TGA-TAATAGG-TCACAGCCGCTGC--AGTTCTT  1083
      ||||||  ||||||| ||| ||||||| |||||| ||||||   ||||||
seq2  TAATTTTCCCTGCTCTTGATTAATAGGTTCACAGGCGCTGCCAGGTTCTT  1099

seq1  AGCAATTTGCAATATACCTGTACAG--CACTCACAGTGACGGAAATGAAA  1131
      ||||| |||| ||||||  ||||||  | ||||||||||||  |||||| 
seq2  AGCAA-TTGC-ATATACTGGTACAGACCTCTCACAGTGACG--AATGAAT  1145

seq1  TTAACTTGTGCGACATG-GATCC--TGCACTA---GGTTTTATG  1169
      ||| || |||||||||| |||||  |||||||   | |||||||
seq2  TTACCTGGTGCGACATGTGATCCTGTGCACTATAGGCTTTTATG  1189


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