BAC Information

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BAC

Clone NameB6Ng01-185J09
Chromosome16 (Build37)
Map Location 16,783,245 - 16,784,234
singlet/doubletsinglet
Overlap geneSpag6
Upstream genePrkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik
Downstream geneEG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185J09.bB6Ng01-185J09.g
ACCGA010657GA010658
length994934
definitionB6Ng01-185J09.b B6Ng01-185J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttttgtttccctcaggggtgtgtggtgggtgagagagaggca
gtgaccacccacaccatcccatcttcaaatgcagttgtcaatagagtcaa
atacaccctcatcctttctacttattgtgtcttgtgaaaactggctggca
tcagtcacccacatgcacacattcactcactcacttttcttggcccaaca
gaattatctcaagccgtggtggatgcaggagcaattcctcttttagtcct
ttgtatccaggagccagaaattgctttgaaaaggatcgctgcctcggccc
tcagtgatatctcaaagcactccccagagttagcacagacggtggtggac
gcaggagctattgctcacttagcccagatgatcctcaaccctgatgcaaa
actgaaggtaataaaaatgatgtcatgaggcagacaaggcagtgctttca
cagtctaagaaaatgaaagcatgtacaggttagcgttacatagtaaaaga
attagtaaatataattgaaaacatacaaatatattatgtagttggtctaa
tatgtgaaaataatgctatagtgggtatacaattaagacaggattgggaa
aactgtgttttgtttgctgctgctatgagaaaaacaccatgaggaaagta
gcttggtgcagggggtagataggtgtccatatcattaagggaagctgagg
caggagctcaaggctggaacctggaggcaggaactgaaggagagaccaca
gaggaaagcttattattattattattattattattattattaatattgat
tttttggagacagggtttctctgtatagccctggctgtccttgaaactca
ctttgagaccaggctggcctcgggactcaaaaatcttcctgccctctgcc
tcccaagtgctggattaaaaaaggaaagcttattattactcgcccccttt
cctggctttcttcctttcttcttcttctcttttttcgtttcttc
gaattcctgatctttccaagacttttatcatgaatgggggttagattttg
tcaaaagctttctcagcatctaatgagatgatcatgtgattttgtctttg
agtttgtttatatactggattatgttgatagatttccacatagtggatta
tccctgcattcctgggatgaagccaacttcttcatgatggatgatcattt
tgatgtgttcttggatttggtttgtgagaattttattgtttttgcatcga
tattcataagggaaattggtctgaagttctctttctttgtttgatctttg
tgtggtttaggtatcagagtaattgtggcttcattgaatgaattgggtag
agtaccttctgtttctattttgtggaatagtttgaggagaattgaaatta
ggtcttctttgaaggcctgatagaactctacactaagcccatctggtcct
gggctctttttggtttggagactatcaatgactgtgtctatttctctagg
ggatatgggactctttagatcattaatttggttctgatttaactttggta
cctggtatctgtctagaaacttgtcaatttcatccaggtttttcagtttt
gttgagtatagctttttgtagtaggatctgatgatgctttggatttcctc
aggttctgttatgtctgccttttcatttctggttttgttaattagaaaac
tttccctgtgccttctagtgagtctggctatgggttttatccattcttgt
tgattttctgaaagaatcagcttcttgttttggttgattctttgaatagc
tctttttgtttccacgtggtggattacaacccctgagtttgattatttcc
tgccatctactcctcttgggtgaatttgcttcccttttgttctagagctt
ttagttgttctgtcaagctcctagtgtatgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16783245_16784234
seq2: B6Ng01-185J09.b_43_1036 (reverse)

seq1  GAAG-AACGAAAAAGAAGAAAGAAGAAGAAAGGAAGAAAGCCAGGAAAGG  49
      |||| |||||||||  || |||||||||||||||||||||||||||||||
seq2  GAAGAAACGAAAAAAGAG-AAGAAGAAGAAAGGAAGAAAGCCAGGAAAGG  49

seq1  GGGCGAGTAATAATAAGCTTTCCTCTTTAATCCCAGCACTTGGGAGGCAG  99
      |||||||||||||||||||||||| ||| |  ||||||||||||||||||
seq2  GGGCGAGTAATAATAAGCTTTCCTTTTTTAATCCAGCACTTGGGAGGCAG  99

seq1  A-GGCAGGCAGATTTCTGAGT-CCGAGGCCAGCCTGGTCTACAAAGTGAG  147
      | |||||| |||||| ||||| |||||||||||||||||| |||||||||
seq2  AGGGCAGGAAGATTTTTGAGTCCCGAGGCCAGCCTGGTCT-CAAAGTGAG  148

seq1  -TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCT-CAAAAAATCA  195
       ||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCAAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCCAAAAAATCA  198

seq1  ATAATAATAATAATAATAATAATAATAATAATAATAAGCTTTCCTCTGTG  245
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAATAATAATAATAATAATAATAATAATAAGCTTTCCTCTGTG  248

seq1  GTCTCTCCTTCAGTTCCTGCCTCCAGGTTCCAGCCTTGAGCTCCTGCCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTTCAGTTCCTGCCTCCAGGTTCCAGCCTTGAGCTCCTGCCTC  298

seq1  AGCTTCCCTTAATGATATGGACACCTATCTA-CCCCTGCACCAAGCTACT  344
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTTCCCTTAATGATATGGACACCTATCTACCCCCTGCACCAAGCTACT  348

seq1  TTCCTCATGGTGTTTTTCTCATAGCAGCAGCAAACAAAACACAGTTTTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATGGTGTTTTTCTCATAGCAGCAGCAAACAAAACACAGTTTTCC  398

seq1  CAATCCTGTCTTAATTGTATACCCACTATAGCATTATTTTCACATATTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGTCTTAATTGTATACCCACTATAGCATTATTTTCACATATTAG  448

seq1  ACCAACTACATAATATATTTGTATGTTTTCAATTATATTTACTAATTCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTACATAATATATTTGTATGTTTTCAATTATATTTACTAATTCTT  498

seq1  TTACTATGTAACGCTAACCTGTACATGCTTTCATTTTCTTAGACTGTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGTAACGCTAACCTGTACATGCTTTCATTTTCTTAGACTGTGAA  548

seq1  AGCACTGCCTTGTCTGCCTCATGACATCATTTTTATTACCTTCAGTTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCCTTGTCTGCCTCATGACATCATTTTTATTACCTTCAGTTTTG  598

seq1  CATCAGGGTTGAGGATCATCTGGGCTAAGTGAGCAATAGCTCCTGCGTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGTTGAGGATCATCTGGGCTAAGTGAGCAATAGCTCCTGCGTCC  648

seq1  ACCACCGTCTGTGCTAACTCTGGGGAGTGCTTTGAGATATCACTGAGGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGTCTGTGCTAACTCTGGGGAGTGCTTTGAGATATCACTGAGGGC  698

seq1  CGAGGCAGCGATCCTTTTCAAAGCAATTTCTGGCTCCTGGATACAAAGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCAGCGATCCTTTTCAAAGCAATTTCTGGCTCCTGGATACAAAGGA  748

seq1  CTAAAAGAGGAATTGCTCCTGCATCCACCACGGCTTGAGATAATTCTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAGGAATTGCTCCTGCATCCACCACGGCTTGAGATAATTCTGTT  798

seq1  GGGCCAAGAAAAGTGAGTGAGTGAATGTGTGCATGTGGGTGACTGATGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGAAAAGTGAGTGAGTGAATGTGTGCATGTGGGTGACTGATGCC  848

seq1  AGCCAGTTTTCACAAGACACAATAAGTAGAAAGGATGAGGGTGTATTTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTTTCACAAGACACAATAAGTAGAAAGGATGAGGGTGTATTTGA  898

seq1  CTCTATTGACAACTGCATTTGAAGATGGGATGGTGTGGGTGGTCACTGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGACAACTGCATTTGAAGATGGGATGGTGTGGGTGGTCACTGCC  948

seq1  TCTCTCTCACCCACCACACACCCCTGAGGGAAACAAAAAAGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCACCCACCACACACCCCTGAGGGAAACAAAAAAGAATTC  994