BAC Information

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BAC

Clone NameB6Ng01-188E09
Chromosome16 (Build37)X (Build37)
Map Location 42,130,096 - 42,130,15586,725,700 - 86,726,654
singlet/doubletsingletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E09.bB6Ng01-188E09.g
ACCGA012614GA012615
length848957
definitionB6Ng01-188E09.b B6Ng01-188E09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,130,096 - 42,130,155)(86,725,700 - 86,726,654)
sequence
gaattctgtcaagtccaggtgtttactcaaaatctacatccagtacagct
ctagagaaccaacccactgatgctctaatctattctcatagacacagtta
cttctactggacctttttctttctatcacagatggatccacagaccctgg
acagcaaggaaactgccaacactcctaagacaggaccaacatccccataa
tcattttcttagttttctcatagagatgttgccccaaagtcagcaggaag
tagctaaagatcatgttgatcccattcctgcttagccttcaactctttgt
agtttttttttttccttttataattacacaaaaacaggaatattagcatt
tcttgttggctcttccccacagttagctggaagtagccaggtatgcctgg
ctaattataagaggggctgtttgcccccttttggctctcttactctccaa
ctctttctgccccttttctccctgacccctttctccctctcttcccttcc
cccttcccaaatctccacatgttcctggataacttctcctcctcttccta
ctcttcctcttccctccttctctctctctctctctctctctctctctctc
tctctctctctctctctctccttctcttttcctatgccttttccaattcc
ctttcccatgctctaaatgtagcccccagcagccaaggagaattgggttc
ctgaaaggaaagctggggctttatatgatgggatggcgagagaagaatga
gaccaagacaagttttctgatcaaggcccaaagttttacttttgggtctg
aacttaaatggggaaaaacccatcccttactacaccaggatctcattg

gaattctaaagaattgtcagaccaccgggaggtggtggcacacaccttta
atcccagcactctggaggctgaggcaggtggatttctgagtttgaggcca
gcctggtctacagagtgagctccaggacagccagggttacacagagaaac
cctgtcttgaaatccaaaaccaaaagcaaaacaaaacaaaacaaaacaaa
acaaaacaaaacaaaacaaaaaaacaagaattgtcagaccactttagaca
atgatatgtcagtactgggcaggatcatacctttacctaaactagtgtgt
atatatatatatatatatatatatatatatatatatatatatatattata
taatattaatctcactttacattccagaaaactgattttggggagggggg
gttcattgtatctctttgtcccttttcccaataagatcacattgaatgaa
ctttcctttttctattttgcatgattaaaatgaatgaataaacaaaacaa
aactcagagtctaaagtatcaatacatttttccattcactgaagtgcact
tatagattgacagttaggtaaaaaaaaaaaaaaagtattttctaccattg
aaagcctgtgatatgtttttatcttgaaaggacaataaagttcaacattt
aaaccaaaaccaaaagcaaagaaactaaatttcaagggatagaattatgg
aataatgaacagaattccttgcttcctgttacatgtactcttatgaaaat
atttaccatgccccttaaggctgcaaaatttaaaatgttacattgtaaat
attccctgatatttaatgtaggaataaaaacaataaaaactagttattca
ctattcttatctttaatatttgaaatacatagccacacccatgcctgtgt
gtgactgtttggagtgtaaagcctggcaaaagtgtgtgtgtgaggatgta
cgccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42130096_42130155
seq2: B6Ng01-188E09.b_602_664 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AAGGA---AAGAG  60
      |||||   |||||
seq2  AAGGAGGGAAGAG  63


seq1: chrX_86725700_86726654
seq2: B6Ng01-188E09.g_66_1022

seq1  GAATTCTAAAGAATTGTCAGACCACCGGGAGGTGGTGGCACACACCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGAATTGTCAGACCACCGGGAGGTGGTGGCACACACCTTTA  50

seq1  ATCCCAGCACTCTGGAGGCTGAGGCAGGTGGATTTCTGAGTTTGAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCTGGAGGCTGAGGCAGGTGGATTTCTGAGTTTGAGGCCA  100

seq1  GCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGGGTTACACAGAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGGGTTACACAGAGAAAC  150

seq1  CCTGTCTTGAAATCCAAAACCAAAAGCAAAACAAAACAAAACAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGAAATCCAAAACCAAAAGCAAAACAAAACAAAACAAAACAAA  200

seq1  ACAAAACAAAACAAAACAAAAAAACAAGAATTGTCAGACCACTTTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAAACAAAAAAACAAGAATTGTCAGACCACTTTAGACA  250

seq1  ATGATATGTCAGTACTGGGCAGGATCATACCTTTACCTAAACTAGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGTCAGTACTGGGCAGGATCATACCTTTACCTAAACTAGTGTGT  300

seq1  ATATATATATATATATATATATATATATATATATATATATATATATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATTATA  350

seq1  TAATATTAATCTCACTTTACATTCCAGAAAACTGATTTTGGGGAGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAATCTCACTTTACATTCCAGAAAACTGATTTTGGGGAGGGGGG  400

seq1  GTTCATTGTATCTCTTTGTCCCTTTTCCCAATAAGATCACATTGAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGTATCTCTTTGTCCCTTTTCCCAATAAGATCACATTGAATGAA  450

seq1  CTTTCCTTTTTCTATTTTGCATGATTAAAATGAATGAATAAACAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTCTATTTTGCATGATTAAAATGAATGAATAAACAAAACAA  500

seq1  AACTCAGAGTCTAAAGTATCAATACATTTTTCCATTCACTGAAGTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGTCTAAAGTATCAATACATTTTTCCATTCACTGAAGTGCACT  550

seq1  TATAGATTGACAGTTAGGTAAAAAAAAAAAAAAAGTATTTTCTACCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTGACAGTTAGGTAAAAAAAAAAAAAAAGTATTTTCTACCATTG  600

seq1  AAAGCCTGTGATATGTTTTTATCTTGAAAGGACAATAAAGTTCAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGTGATATGTTTTTATCTTGAAAGGACAATAAAGTTCAACATTT  650

seq1  AAAACCAAAACCAAAAAGCAAAGAAACTAAA-TTCAAAGGATAGAATTAT  699
       ||||||||||| |||||||||||||||||| ||||| ||||||||||||
seq2  -AAACCAAAACC-AAAAGCAAAGAAACTAAATTTCAAGGGATAGAATTAT  698

seq1  GGAATAATGAACAGAATTCCTTGCTTCCTGTTACATGTACTC-TATGAAA  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAATAATGAACAGAATTCCTTGCTTCCTGTTACATGTACTCTTATGAAA  748

seq1  ATATTTACCATGCCCCTTAA-GCTGCAAAATTAAAAATGTTACATTGTAA  797
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  ATATTTACCATGCCCCTTAAGGCTGCAAAATTTAAAATGTTACATTGTAA  798

seq1  ATATTCCCTGATTATTTAATGTTAGAAT-AAAACAAT-AAAACTAGTTA-  844
      ||||||||||| ||||||||||  |||| |||||||| ||||||||||| 
seq2  ATATTCCCTGA-TATTTAATGTAGGAATAAAAACAATAAAAACTAGTTAT  847

seq1  TCACTATTCTTATCTTTTATTATTTGAAATACATAG-CACACCCATGCCT  893
      |||||||||||||| |||| |||||||||||||||| |||||||||||||
seq2  TCACTATTCTTATC-TTTAATATTTGAAATACATAGCCACACCCATGCCT  896

seq1  GTGTGTGATTGTTTGGATGTGTAAGGCTGGGCAAGGGTGTGTGT-TGAGG  942
      |||||||| |||||||| |||||| ||  |||||  |||||||| ||| |
seq2  GTGTGTGACTGTTTGGA-GTGTAAAGCCTGGCAAAAGTGTGTGTGTGA-G  944

seq1  GATGTAGGCCAAA  955
      |||||| ||||||
seq2  GATGTACGCCAAA  957


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