BAC Information

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BAC

Clone NameB6Ng01-190D20
Chromosome16 (Build37)
Map Location 85,950,488 - 86,102,308
singlet/doubletdoublet
Overlap geneLOC100040025
Upstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5
Downstream geneLOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190D20.bB6Ng01-190D20.g
ACCGA014045GA014046
length9711,089
definitionB6Ng01-190D20.b B6Ng01-190D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,950,488 - 85,951,457)(86,101,209 - 86,102,308)
sequence
gaattccatctccttttcagctacataatgagtttggggccaccctgtgc
aagatgagaacctgtgtcaaaaaaaattaaaaatatatgagcatatctgt
agaaaaaccattgaaggtctttgaataactttgttttggaactattttat
gaattaagaacttaggaaaacacagcattgcctttctaagtatgtttctt
catccagaaactaagaggatagaaataatacttcctcattcttttggatg
gacagtcagtctgacatcatcagttttgactggaaatactggaggtttca
gggccatatttcatggcttacgttgtttgatagagactttgctagcagat
gtggggagggacgcctgtggaattccttgaggtaatgttatattaggaca
aaatatctagaaaagttttatagaaatgccaggaattttagtaggttctt
tggaattcctgtagaaatgtttcccttaggatctctctctctctctctct
ctctctctctctctctctctctcttgctctcgctctattttggtgtgtgt
gcaaactttattgtgatttttatcatggaatactaatctcctcaaaaata
tttttgaaaaccaaattcttccacaaaaatagtgtgccttcatcatcatg
atggtaaatttcctaaaattcaacaaaataatattttcagttaaatacac
acacacacacagatatacatatgaaaattgaaaagtgattttcatgttga
tgttggtaatttataggaggaatcttgataatgtgactacttgcaatgcg
tcaagtattccttgcttaaaacaaacaaacaaacaacaacaaaacaagta
agactaccctggcactgtatactaccatcatctcatgccttcattttgta
atttattttttggttatatactggataaaatgggcactcatacacgcacc
taaagggatgtctcggcagct
gaattcctgatctttccaaaactttatcgtgaatgggtgttggaatttat
caaacgctttttcagcatcttatgagatgatcatatggtttttgtctttg
agtttgtttatatagtggattacgttgatggatgtccacattttaaacca
tgtctgcatccctgggatgaatcctacttgatcatgatggataatcattt
tgatgtgttcttggaattggtttgtgagaattttattgagttaacttgag
cacagcaagtgagtggtctctttatccccttcctttatgactaatactga
cagaccctttagcaattagacattttcctgtaaagtcaaaactagaatta
gaattcccacaggtctgtgtaatgatcacatatgtacactgaatgaatat
atgtgagatttcatgtttaatatgaaaaataatatcaaaatgaaagaaca
tataaaacatggatctggagacataaaagagagcctacatgaccaggagt
gttagacttgtttccatactcctttgcaatgtgtcaagagaaaatcatgg
gactacctagttttacctgtgactaaagactcaaatttctttgaagaaaa
gagtttcatcaaaaagaaagtgtaaagtggaaaaagtctgttgcccacag
cactgctgtgggctctcgggaatcagagcaaacctggcacagcagttgct
tcacttaacacattaaatcaaagcaccaactgaagctatcaaaataccaa
taaatacatcaaaaccatgcttagtagctgaaaaaaatctgaactcagaa
atcaaattgttggatgattgtgtaattttgatatttattacatgccctgt
gaaggaaaagcaattaagatgaatgaaggttaagatgaattgaaggttaa
gaaagcaagggatggctagctgtgtttttgtgtaagttttacacaaacta
caactcaataccaatttacataatttcatttataagataagtcatttact
cattttatgtagtagtttccataagcatatgtatgttgctcactcatgag
aatttatcataatgtatgtaagttcttcaattacccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85950488_85951457
seq2: B6Ng01-190D20.b_45_1015

seq1  GAATTCCATCTCCTTTTCAGCTACATAATGAGTTTGGGGCCACCCTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCTTTTCAGCTACATAATGAGTTTGGGGCCACCCTGTGC  50

seq1  AAGATGAGAACCTGTGTCAAAAAAAATTAAAAATATATGAGCATATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGAACCTGTGTCAAAAAAAATTAAAAATATATGAGCATATCTGT  100

seq1  AGAAAAACCATTGAAGGTCTTTGAATAACTTTGTTTTGGAACTATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCATTGAAGGTCTTTGAATAACTTTGTTTTGGAACTATTTTAT  150

seq1  GAATTAAGAACTTAGGAAAACACAGCATTGCCTTTCTAAGTATGTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGAACTTAGGAAAACACAGCATTGCCTTTCTAAGTATGTTTCTT  200

seq1  CATCCAGAAACTAAGAGGATAGAAATAATACTTCCTCATTCTTTTGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAAACTAAGAGGATAGAAATAATACTTCCTCATTCTTTTGGATG  250

seq1  GACAGTCAGTCTGACATCATCAGTTTTGACTGGAAATACTGGAGGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCAGTCTGACATCATCAGTTTTGACTGGAAATACTGGAGGTTTCA  300

seq1  GGGCCATATTTCATGGCTTACGTTGTTTGATAGAGACTTTGCTAGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATATTTCATGGCTTACGTTGTTTGATAGAGACTTTGCTAGCAGAT  350

seq1  GTGGGGAGGGACGCCTGTGGAATTCCTTGAGGTAATGTTATATTAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGGGACGCCTGTGGAATTCCTTGAGGTAATGTTATATTAGGACA  400

seq1  AAATATCTAGAAAAGTTTTATAGAAATGCCAGGAATTTTAGTAGGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAGAAAAGTTTTATAGAAATGCCAGGAATTTTAGTAGGTTCTT  450

seq1  TGGAATTCCTGTAGAAATGTTTCCCTTAGGATCTCTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCTGTAGAAATGTTTCCCTTAGGATCTCTCTCTCTCTCTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTCTCTCTTGCTCTCGCTCTATTTTGGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTTGCTCTCGCTCTATTTTGGTGTGTGT  550

seq1  GCAAACTTTATTGTGATTTTTATCATGGAATACTAATCTCCTCAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTATTGTGATTTTTATCATGGAATACTAATCTCCTCAAAAATA  600

seq1  TTTTTGAAAACCAAATTCTTCCACAAAAATAGTGTGCCTTCATCATCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAAACCAAATTCTTCCACAAAAATAGTGTGCCTTCATCATCATG  650

seq1  ATGGTAAATTTCCTAAAATTCAACAAAATAATATTTTCAGTTAAATACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAATTTCCTAAAATTCAACAAAATAATATTTTCAGTTAAATACAC  700

seq1  ACACACACACAGATATACATATGAAAATTGAAAAGTGATTTTCATGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGATATACATATGAAAATTGAAAAGTGATTTTCATGTTGA  750

seq1  TGTTGGTAATTTATAGGAGGAATCTTGATAATGTGACTACTTGCAATGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTAATTTATAGGAGGAATCTTGATAATGTGACTACTTGCAATGCG  800

seq1  TCAGGTATTCCTTGCTTAAAAACAAACAAACAAACAAACAACAAAACAAG  850
      ||| ||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TCAAGTATTCCTTGCTT-AAAACAAACAAACAAAC-AACAACAAAACAAG  848

seq1  TAAGACTACCCTGGCACTGTATACTACCATCATCTCATGCCTTCATTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTACCCTGGCACTGTATACTACCATCATCTCATGCCTTCATTTTG  898

seq1  TAATTTATTTTTTGGTTAATATACT-GAT-AAATGGGGACTCAGAAACAA  948
      ||||||||||||||||| ||||||| ||| ||||||| ||||| | ||  
seq2  TAATTTATTTTTTGGTT-ATATACTGGATAAAATGGGCACTCATACACGC  947

seq1  ACCTAAA-GGATGTCTC-GCAGCT  970
      ||||||| ||||||||| ||||||
seq2  ACCTAAAGGGATGTCTCGGCAGCT  971

seq1: chr16_86101209_86102308
seq2: B6Ng01-190D20.g_63_1151 (reverse)

seq1  GAAGGGTAAATTTGAAGAAC-TACATACATTTATGATAAAATCTCATGAG  49
      |||||||||  ||||||||| |||||||| |||||||||| |||||||||
seq2  GAAGGGTAA--TTGAAGAACTTACATACA-TTATGATAAATTCTCATGAG  47

seq1  TGAAGAAACATACATATGTTTATGGAAACTAACTACATAAAATGAGTAAA  99
      || || |||||||||||| ||||||||||| |||||||||||||||||||
seq2  TG-AGCAACATACATATGCTTATGGAAACT-ACTACATAAAATGAGTAAA  95

seq1  TGACTTTATCTTTATAAATGAAATTATGTAAATTTGGTATTTGAGTTGTA  149
      |||| ||||| ||||||||||||||||||||| |||||| ||||||||||
seq2  TGAC-TTATC-TTATAAATGAAATTATGTAAA-TTGGTA-TTGAGTTGTA  141

seq1  GTTTTGTGTAAAACTTACACAAAAACACAGCTAGCCATCCCTTGCTTTTC  199
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  G-TTTGTGTAAAACTTACACAAAAACACAGCTAGCCATCCCTTGC-TTTC  189

seq1  TTAACCTTCATTTCATCTTAACCTTCATTTCATCTTAATTGCTTTTCCTT  249
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTAACCTTCAATTCATCTTAACCTTCA-TTCATCTTAATTGCTTTTCCTT  238

seq1  CACAGGGCATGTAATAAATATCAAAATTACACAATCATCCAACAATTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCATGTAATAAATATCAAAATTACACAATCATCCAACAATTTGA  288

seq1  TTTCTGAGTTCAGATTTTTTTCAGCTACTAAGCATGGTTTTGATGTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCAGATTTTTTTCAGCTACTAAGCATGGTTTTGATGTATTT  338

seq1  ATTGGTATTTTGATAGCTTCAGTTGGTGCTTTGATTTAATGTGTTAAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATTTTGATAGCTTCAGTTGGTGCTTTGATTTAATGTGTTAAGTG  388

seq1  AAGCAACTGCTGTGCCAGGTTTGCTCTGATTCCCGAGAGCCCACAGCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTGCTGTGCCAGGTTTGCTCTGATTCCCGAGAGCCCACAGCAGT  438

seq1  GCTGTGGGCAACAGACTTTTTCCACTTTACACTTTCTTTTTGATGAAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGCAACAGACTTTTTCCACTTTACACTTTCTTTTTGATGAAACT  488

seq1  CTTTTCTTCAAAGAAATTTGAGTCTTTAGTCACAGGTAAAACTAGGTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCAAAGAAATTTGAGTCTTTAGTCACAGGTAAAACTAGGTAGT  538

seq1  CCCATGATTTTCTCTTGACACATTGCAAAGGAGTATGGAAACAAGTCTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATTTTCTCTTGACACATTGCAAAGGAGTATGGAAACAAGTCTAA  588

seq1  CACTCCTGGTCATGTAGGCTCTCTTTTATGTCTCCAGATCCATGTTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGGTCATGTAGGCTCTCTTTTATGTCTCCAGATCCATGTTTTAT  638

seq1  ATGTTCTTTCATTTTGATATTATTTTTCATATTAAACATGAAATCTCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTCATTTTGATATTATTTTTCATATTAAACATGAAATCTCACA  688

seq1  TATATTCATTCAGTGTACATATGTGATCATTACACAGACCTGTGGGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATTCAGTGTACATATGTGATCATTACACAGACCTGTGGGAATT  738

seq1  CTAATTCTAGTTTTGACTTTACAGGAAAATGTCTAATTGCTAAAGGGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTAGTTTTGACTTTACAGGAAAATGTCTAATTGCTAAAGGGTCT  788

seq1  GTCAGTATTAGTCATAAAGGAAGGGGATAAAGAGACCACTCACTTGCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTAGTCATAAAGGAAGGGGATAAAGAGACCACTCACTTGCTGT  838

seq1  GCTCAAGTTAACTCAATAAAATTCTCACAAACCAATTCCAAGAACACATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTTAACTCAATAAAATTCTCACAAACCAATTCCAAGAACACATC  888

seq1  AAAATGATTATCCATCATGATCAAGTAGGATTCATCCCAGGGATGCAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTATCCATCATGATCAAGTAGGATTCATCCCAGGGATGCAGAC  938

seq1  ATGGTTTAAAATGTGGACATCCATCAACGTAATCCACTATATAAACAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAAAATGTGGACATCCATCAACGTAATCCACTATATAAACAAAC  988

seq1  TCAAAGACAAAAACCATATGATCATCTCATAAGATGCTGAAAAAGCGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAAAAACCATATGATCATCTCATAAGATGCTGAAAAAGCGTTT  1038

seq1  GATAAATTCCAACACCCATTCACGATAAAGTTTTGGAAAGATCAGGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCCAACACCCATTCACGATAAAGTTTTGGAAAGATCAGGAATT  1088

seq1  C  1100
      |
seq2  C  1089