BAC Information

Click to search

BAC

Clone NameB6Ng01-191I17
Chromosome16 (Build37)
Map Location 66,050,597 - 66,195,768
singlet/doubletdoublet
Overlap geneLOC100039035
Upstream geneHtr1f, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191I17.bB6Ng01-191I17.g
ACCGA015007GA015008
length1,1471,058
definitionB6Ng01-191I17.b B6Ng01-191I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,194,491 - 66,195,768)(66,050,597 - 66,051,654)
sequence
gaattctcaacttgccttggactgtggactgctgttttccaaaggatcaa
ttttaagacgagaaaatctgtttatctgcttcgaagttgtgattcctagg
ggtacgtacagccctcaaggtggaggtgtgaaggatgtgggcgagagagg
cacattctcccactaggatttgatgacaggctgctgaaacctcctgccag
agagaattggtcgttttgtgcaggctggagtcaactcttagcctctgcat
acatatcagctcagtgaggagtggagaggagctcgcttatccatgtcttg
gtgtcttaatactaaatgcaatctcaaacatggaaggtgccgagtatcta
tctactcctgcaatctaaacagcggcagtgctgccagtgtctgattcgtg
gagcaaccttgcgtcttcccaaactcaatgttagcgtaacagagctactg
tgaaagctaaataacatctacatatacttagaagcccgtcttcatgatag
attgtgtgagaaggaaggttcttatgaaggctcactttggctagcagtcc
tccaacaattttctgacgtagtccttagtcttgcctcagtgttcagtttc
tacatctacacaagagagagaaccaggaggcaaaggcattgatgacctga
attgaattcatggaacccatggtgaaatgagggagatgattcccaagaac
tgctctctgacctctgcattcaccagggcattcccaatctcaatacagca
gacacaaactcacagcaacaataaacaaaataatttttcagatttatttt
atgtttgctcttcgtatatatgcataccacatgggttcccgtacccatga
aagtgagactagggtagtagatcccctggaactggagttacaggttatga
gttgcaatgggtacagggaaccaatcctccttatccactgagccaagtct
ccaaccaaaggaaacaaaccagtttctgtctctttagcagcacggcattt
attccttttaacaaactgtgataatgacgaaaacagtgatcaggttatag
ctgtgttgtataagcaccagaactgcatacaccatcttgctttcgttcca
tgatgtgataatacaggacaaaggcaacttaagtagacggacttatg

gaattcatattctttatccacttatcagtttgtggtggtttgaataagta
tggccttcatagactcatgtgttcaaatgcttggcccatggcaagtagta
ctgttaggagacatggcattggtggaggaagaatgtcactgttggggcaa
actttgagtttgcctaggctcaaggtccactcagtgtggaactcattctt
attctgctgtctgtggataaatgtgtaaaactctaagttccttctccagc
actatgcctgcctggatgcttttgtgcttccctccatggcaataacacac
tcaacctctaaaactgtaagccaatcctgaataaatgtttaccattatga
gagttgccttggtcatggtgtctcctcacagcaaggaaaaccctaactaa
taaacaattaataaatacttctagtattttaccattataaatattatccc
aatgaaccagcattcatatacttataaaatattatttatttactttcttc
tcacttaccaaaaatactttgagaatatgaatattttagtagaggtcata
ggaatcaaaggaaaggaaaatatttaagaaatggaacctagggcttttcc
tgagcacctggggagccatcttggttcccagatccctcaaagactagtct
gcacaggtaagagtatggactacagaagctaacagcttctgggacaggag
gaagccacacagcttctggggcagaccccaatttgggctccagacatctg
ggcacctttcctggtacaggaggaggtgtccaccccacctgggagggctt
tgccggaacacgtggggaaaccatcttggttcccggatccttcagagact
aatctgcacaggggagagtgtggactacagaagctaacgtcttctgggac
aggcagaacaacacagcatctggggctgaccccatttttgggctccagac
atccagcacttcctgcagaaggagtaggtgttccacctccacctgggagg
gcttgcagagcacctgggggagtcatctctgtcagggatctttcagaaga
acagactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66194491_66195768
seq2: B6Ng01-191I17.b_47_1193 (reverse)

seq1  CATAAGTCCGTGCTCTTGACTGTAGGAGTAATGTGAACTGCTGCTTCACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCGCCACGGGAAGTTCCCCTACAGCGGTGGGATGCAATGTGAAATTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGCCCCAT-AGTCTGTTTCTCCCTTAGGTTGCTTTTGTCCTGGTATTT  149
             ||| |||| || |    |||| ||||| |||||||||   | |
seq2  -------CATAAGTCCGTCT---ACTTAAGTTGCCTTTGTCCTG---TAT  37

seq1  TATCACATCAATGGGAAAAGGAAGCAAGATGGGTTGTATGCATGTCTGGT  199
      ||||||||| ||||  || | |||||||||||  ||||||||  ||||||
seq2  TATCACATC-ATGG--AACGAAAGCAAGATGG--TGTATGCAGTTCTGGT  82

seq1  GGCTTTATAC-ACACAGCTAATAACCCTTGGATCACTGTTTTTCGTTCAT  248
      |   |||||| |||||||| ||||||    |||||||| |||||| ||||
seq2  G--CTTATACAACACAGCT-ATAACC---TGATCACTG-TTTTCG-TCAT  124

seq1  TATCACAGTTTGTTAAAAGGAATAAATGCCGTGCTGCTAAAGAGACAGAA  298
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATCACAGTTTGTTAAAAGGAATAAATGCCGTGCTGCTAAAGAGACAG-A  173

seq1  AACTGGTTTTGTTTTCCTTTGGTTTGGAGACTTGGCTCAGTGGATAAGGA  348
      |||||||||   |||||||||| |||||||||||||||||||||||||||
seq2  AACTGGTTT--GTTTCCTTTGG-TTGGAGACTTGGCTCAGTGGATAAGGA  220

seq1  GGGATTTGGTTCCCTGTACCCATTTGCAACTCATAACCTGTAACTCCAGT  398
      ||   ||||||||||||||||| |||||||||||||||||||||||||||
seq2  GG--ATTGGTTCCCTGTACCCA-TTGCAACTCATAACCTGTAACTCCAGT  267

seq1  TCCAGGGGATCTACTACCCTAGTCTCACTTTCATGGGTACGGGAACCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGATCTACTACCCTAGTCTCACTTTCATGGGTACGGGAACCCAT  317

seq1  GTGGTATGCATATATACGAAGAGCAAACATAAAATAAATCTGAAAAATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATGCATATATACGAAGAGCAAACATAAAATAAATCTGAAAAATTA  367

seq1  TTTTGTTTATTGTTGCTGTGAGTTTGTGTCTGCTGTATTGAGATTGGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTATTGTTGCTGTGAGTTTGTGTCTGCTGTATTGAGATTGGGAA  417

seq1  TGCCCTGGTGAATGCAGAGGTCAGAGAGCAGTTCTTGGGAATCATCTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGTGAATGCAGAGGTCAGAGAGCAGTTCTTGGGAATCATCTCCC  467

seq1  TCATTTCACCATGGGTTCCATGAATTCAATTCAGGTCATCAATGCCTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACCATGGGTTCCATGAATTCAATTCAGGTCATCAATGCCTTTG  517

seq1  CCTCCTGGTTCTCTCTCTTGTGTAGATGTAGAAACTGAACACTGAGGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGTTCTCTCTCTTGTGTAGATGTAGAAACTGAACACTGAGGCAA  567

seq1  GACTAAGGACTACGTCAGAAAATTGTTGGAGGACTGCTAGCCAAAGTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGACTACGTCAGAAAATTGTTGGAGGACTGCTAGCCAAAGTGAG  617

seq1  CCTTCATAAGAACCTTCCTTCTCACACAATCTATCATGAAGACGGGCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATAAGAACCTTCCTTCTCACACAATCTATCATGAAGACGGGCTTC  667

seq1  TAAGTATATGTAGATGTTATTTAGCTTTCACAGTAGCTCTGTTACGCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATATGTAGATGTTATTTAGCTTTCACAGTAGCTCTGTTACGCTAA  717

seq1  CATTGAGTTTGGGAAGACGCAAGGTTGCTCCACGAATCAGACACTGGCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTTGGGAAGACGCAAGGTTGCTCCACGAATCAGACACTGGCAG  767

seq1  CACTGCCGCTGTTTAGATTGCAGGAGTAGATAGATACTCGGCACCTTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCGCTGTTTAGATTGCAGGAGTAGATAGATACTCGGCACCTTCCA  817

seq1  TGTTTGAGATTGCATTTAGTATTAAGACACCAAGACATGGATAAGCGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGATTGCATTTAGTATTAAGACACCAAGACATGGATAAGCGAGC  867

seq1  TCCTCTCCACTCCTCACTGAGCTGATATGTATGCAGAGGCTAAGAGTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCACTCCTCACTGAGCTGATATGTATGCAGAGGCTAAGAGTTGA  917

seq1  CTCCAGCCTGCACAAAACGACCAATTCTCTCTGGCAGGAGGTTTCAGCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTGCACAAAACGACCAATTCTCTCTGGCAGGAGGTTTCAGCAG  967

seq1  CCTGTCATCAAATCCTAGTGGGAGAATGTGCCTCTCTCGCCCACATCCTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATCAAATCCTAGTGGGAGAATGTGCCTCTCTCGCCCACATCCTT  1017

seq1  CACACCTCCACCTTGAGGGCTGTACGTACCCCTAGGAATCACAACTTCGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCCACCTTGAGGGCTGTACGTACCCCTAGGAATCACAACTTCGA  1067

seq1  AGCAGATAAACAGATTTTCTCGTCTTAAAATTGATCCTTTGGAAAACAGC  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAACAGATTTTCTCGTCTTAAAATTGATCCTTTGGAAAACAGC  1117

seq1  AGTCCACAGTCCAAGGCAAGTTGAGAATTC  1278
      ||||||||||||||||||||||||||||||
seq2  AGTCCACAGTCCAAGGCAAGTTGAGAATTC  1147


seq1: chr16_66050597_66051654
seq2: B6Ng01-191I17.g_67_1124

seq1  GAATTCATATTCTTTATCCACTTATCAGTTTGTGGTGGTTTGAATAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCTTTATCCACTTATCAGTTTGTGGTGGTTTGAATAAGTA  50

seq1  TGGCCTTCATAGACTCATGTGTTCAAATGCTTGGCCCATGGCAAGTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCATAGACTCATGTGTTCAAATGCTTGGCCCATGGCAAGTAGTA  100

seq1  CTGTTAGGAGACATGGCATTGGTGGAGGAAGAATGTCACTGTTGGGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGAGACATGGCATTGGTGGAGGAAGAATGTCACTGTTGGGGCAA  150

seq1  ACTTTGAGTTTGCCTAGGCTCAAGGTCCACTCAGTGTGGAACTCATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGTTTGCCTAGGCTCAAGGTCCACTCAGTGTGGAACTCATTCTT  200

seq1  ATTCTGCTGTCTGTGGATAAATGTGTAAAACTCTAAGTTCCTTCTCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTGTCTGTGGATAAATGTGTAAAACTCTAAGTTCCTTCTCCAGC  250

seq1  ACTATGCCTGCCTGGATGCTTTTGTGCTTCCCTCCATGGCAATAACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCTGCCTGGATGCTTTTGTGCTTCCCTCCATGGCAATAACACAC  300

seq1  TCAACCTCTAAAACTGTAAGCCAATCCTGAATAAATGTTTACCATTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCTAAAACTGTAAGCCAATCCTGAATAAATGTTTACCATTATGA  350

seq1  GAGTTGCCTTGGTCATGGTGTCTCCTCACAGCAAGGAAAACCCTAACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCTTGGTCATGGTGTCTCCTCACAGCAAGGAAAACCCTAACTAA  400

seq1  TAAACAATTAATAAATACTTCTAGTATTTTACCATTATAAATATTATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTAATAAATACTTCTAGTATTTTACCATTATAAATATTATCCC  450

seq1  AATGAACCAGCATTCATATACTTATAAAATATTATTTATTTACTTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCAGCATTCATATACTTATAAAATATTATTTATTTACTTTCTTC  500

seq1  TCACTTACCAAAAATACTTTGAGAATATGAATATTTTAGTAGAGGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACCAAAAATACTTTGAGAATATGAATATTTTAGTAGAGGTCATA  550

seq1  GGAATCAAAGGAAAGGAAAATATTTAAGAAATGGAACCTAGGGCTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAAGGAAAGGAAAATATTTAAGAAATGGAACCTAGGGCTTTTCC  600

seq1  TGAGCACCTGGGGAGCCATCTTGGTTCCCAGATCCCTCAAAGACTAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCTGGGGAGCCATCTTGGTTCCCAGATCCCTCAAAGACTAGTCT  650

seq1  GCACAGGTAAGAGTATGGACTACAGAAGCTAACAGCTTCTGGGACAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTAAGAGTATGGACTACAGAAGCTAACAGCTTCTGGGACAGGAG  700

seq1  GAAGCCACACAGCTTCTGGGGCAGACCCCAATTTGGGCTCCAGACATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACACAGCTTCTGGGGCAGACCCCAATTTGGGCTCCAGACATCTG  750

seq1  GGCACCTTTCCTGGTACAGGA-GAGGTGTCCACCCCACCTGGGAGGGCTT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCACCTTTCCTGGTACAGGAGGAGGTGTCCACCCCACCTGGGAGGGCTT  800

seq1  TGCCGGAACACGTGGGGAAACCATCTTGGTTCCCGGATCCTTCAGAGACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGAACACGTGGGGAAACCATCTTGGTTCCCGGATCCTTCAGAGACT  850

seq1  AATCTGCACAGGGGAGAGTGTGGACTACAGAAGCTAAGGGCTTCTGGGAC  899
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  AATCTGCACAGGGGAGAGTGTGGACTACAGAAGCTAACGTCTTCTGGGAC  900

seq1  AGGCAGAAACAACACAGCATCTGGGGCTGACCCCA-TTTTGGGCTCCAGA  948
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGCAG-AACAACACAGCATCTGGGGCTGACCCCATTTTTGGGCTCCAGA  949

seq1  CATCCAGGCACCTTCCTGCCAGAGGAG-AGGTG-TCCACC-CCACCTGGG  995
      |||||| ||| ||||||||   ||||| ||||| |||||| |||||||||
seq2  CATCCA-GCA-CTTCCTGCAGAAGGAGTAGGTGTTCCACCTCCACCTGGG  997

seq1  AGGGCTTTGCCAGAGCACCTGGGGGAGTCATCTCTGGTCAGGGATCTCTC  1045
      |||||||   ||||||||||||||||||||||||| ||||||||||| ||
seq2  AGGGCTT--GCAGAGCACCTGGGGGAGTCATCTCT-GTCAGGGATCTTTC  1044

seq1  AG-AGACCAGACTG  1058
      || ||| |||||||
seq2  AGAAGAACAGACTG  1058


| Home | SequenceCutter | Blast | Download |