BAC Information

Click to search

BAC

Clone NameB6Ng01-191P20
Chromosome16 (Build37)
Map Location 45,573,300 - 45,574,370
singlet/doubletsinglet
Overlap geneSlc9a10
Upstream geneLOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681
Downstream geneGcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191P20.bB6Ng01-191P20.g
ACCGA015346GA015347
length9891,080
definitionB6Ng01-191P20.b B6Ng01-191P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatctatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttaagtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggacaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagcccatt
tttacaatgttgatcctgccaatccatgagcatgggagatcctttccatc
ttctgagatcttctttaattctttcttcagagaccttgaagttcttatca
tacagatctttcacttcccttaggtagagtcacgtccgagattattttta
tattaatttgtggaactattggagaagggtgttgtttcc
gaattcaacaaagcgagttccaggacagccagagctactgagaaaccctg
tctcgaaaaactcaaaaaaaaaaaaaggcaataagttgtcactgtgtcca
cagcacatgctaactttaactttaatcaacacttcttttaggcgagctac
caacgacagtacaggaatgaggttctgtcccagagtgcagtgcaggtgtt
ggtaggcgcagctggaagctttggtgagaagaagggagagtaagtacgtt
gtcaggagaggccttctcccctaaagctcctctgcatgggcattttcatg
gttgtgtgttgtaacacaccccccctccccggtcatctggtatcatttgc
acaaagcaccccctgctctgcacactacgctcagtcccctcctttccatg
tcccaaactcaaggccttcgggctggtgtatttggcaagcatcttcctga
aagaaataatccttttctctttcctttcctgaatgcagagccaaagtgta
gcaaactggttttccttttagcctctctgaacacctgcataggggccaag
tgttccttagtctccgcagatgcatcttcccaaagcaccaaagttaacac
ctggtatagtcttcgtgagctggtactgatttcctcagatctgtcctaag
caaagctggtgtattggggagcaccctcaggtcaccctggttagggatat
gtactatataattagcagtaggagagcagttaaactgccatgtagttgac
acagtgtctacccaaagcccagacataccttccaaacctacatcttcccc
tgaatgctgaagaaacttaaatccaggtaaaatgatgccaaggccatttc
caagcctgctttgacatgtacacttgggctcactatcccacagaaaagcc
tagaactttggtagcccagacagtaaagagaaaagctgtttatcagaaga
gaattcatgggttaatccatagcacaagacatgtacagaagatgtaaatt
cctcatgtagcccaaggcacagaacttcctcccaaagaagcacaagaagt
ttccatttcagccaatctgttgcaattcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45573300_45574370
seq2: B6Ng01-191P20.g_67_1146

seq1  GAATTCAACAAAGCGAGTTCCAGGACAGCCAGAGCTACTGAGAAACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAGCGAGTTCCAGGACAGCCAGAGCTACTGAGAAACCCTG  50

seq1  TCTCGAAAAACTCAAAAAAAAAAAAAGGCAATAAGTTGTCACTGTGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAAACTCAAAAAAAAAAAAAGGCAATAAGTTGTCACTGTGTCCA  100

seq1  CAGCACATGCTAACTTTAACTTTAATCAACACTTCTTTTAGGCGAGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATGCTAACTTTAACTTTAATCAACACTTCTTTTAGGCGAGCTAC  150

seq1  CAACGACAGTACAGGAATGAGGTTCTGTCCCAGAGTGCAGTGCAGGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACAGTACAGGAATGAGGTTCTGTCCCAGAGTGCAGTGCAGGTGTT  200

seq1  GGTAGGCGCAGCTGGAAGCTTTGGTGAGAAGAAGGGAGAGTAAGTACGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCGCAGCTGGAAGCTTTGGTGAGAAGAAGGGAGAGTAAGTACGTT  250

seq1  GTCAGGAGAGGCCTTCTCCCCTAAAGCTCCTCTGCATGGGCATTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGAGGCCTTCTCCCCTAAAGCTCCTCTGCATGGGCATTTTCATG  300

seq1  GTTGTGTGTTGTAACACACCCCCCCTCCCCGGTCATCTGGTATCATTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGTTGTAACACACCCCCCCTCCCCGGTCATCTGGTATCATTTGC  350

seq1  ACAAAGCACCCCCTGCTCTGCACACTACGCTCAGTCCCCTCCTTTCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCACCCCCTGCTCTGCACACTACGCTCAGTCCCCTCCTTTCCATG  400

seq1  TCCCAAACTCAAGGCCTTCGGGCTGGTGTATTTGGCAAGCATCTTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACTCAAGGCCTTCGGGCTGGTGTATTTGGCAAGCATCTTCCTGA  450

seq1  AAGAAATAATCCTTTTCTCTTTCCTTTCCTGAATGCAGAGCCAAAGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATCCTTTTCTCTTTCCTTTCCTGAATGCAGAGCCAAAGTGTA  500

seq1  GCAAACTGGTTTTCCTTTTAGCCTCTCTGAACACCTGCATAGGGGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGGTTTTCCTTTTAGCCTCTCTGAACACCTGCATAGGGGCCAAG  550

seq1  TGTTCCTTAGTCTCCGCAGATGCATCTTCCCAAAGCACCAAAGTTAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTAGTCTCCGCAGATGCATCTTCCCAAAGCACCAAAGTTAACAC  600

seq1  CTGGTATAGTCTTCGTGAGCTGGTACTGATTTCCTCAGATCTGTCCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATAGTCTTCGTGAGCTGGTACTGATTTCCTCAGATCTGTCCTAAG  650

seq1  CAAAGCTGGTGTATTGGGGAGCACCCTCAGGTCACCCTGGTTAGGGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGGTGTATTGGGGAGCACCCTCAGGTCACCCTGGTTAGGGATAT  700

seq1  GTACTATATAATTAGCAGTAGGAGAGCAGTTAAACTGCCATGTAGTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATATAATTAGCAGTAGGAGAGCAGTTAAACTGCCATGTAGTTGAC  750

seq1  ACAGTGTCTACCCAAAGCCCAGACATACCTTCCAAACCTACATCTTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTACCCAAAGCCCAGACATACCTTCCAAACCTACATCTTCCCC  800

seq1  TGAATGCTGAAGAAACTTAAATCCAGGTAAAATGATGCCAAGGCCATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTGAAGAAACTTAAATCCAGGTAAAATGATGCCAAGGCCATTTC  850

seq1  CAAAGCCTGCTTTGACATGTACACTT-GGCTCACTATCCCACAGAAAAGC  899
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  C-AAGCCTGCTTTGACATGTACACTTGGGCTCACTATCCCACAGAAAAGC  899

seq1  CTAG-ACTTTGGTAGCCCAGACAGTAAAGAGAAAAGCTGTTTATCAGAAG  948
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTTTGGTAGCCCAGACAGTAAAGAGAAAAGCTGTTTATCAGAAG  949

seq1  AGAA-TCAT-GGTTAATCCATAGCACAAGACATGTACAGAAGATGTAAAT  996
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATGGGTTAATCCATAGCACAAGACATGTACAGAAGATGTAAAT  999

seq1  T-CTCATGGTAGCCCAA-GCACAG-ACTT-CTCCCAA--GAGCACAAGAG  1040
      | ||||| ||||||||| |||||| |||| |||||||   ||||||||| 
seq2  TCCTCAT-GTAGCCCAAGGCACAGAACTTCCTCCCAAAGAAGCACAAGAA  1048

seq1  TTTTCATTTTCAGCCAATCTG-TGCAAATCAT  1071
       ||||  |||||||||||||| ||||| ||||
seq2  GTTTCCATTTCAGCCAATCTGTTGCAATTCAT  1080