BAC Information

Click to search

BAC

Clone NameB6Ng01-196E24
Chromosome16 (Build37)12 (Build37)
Map Location 54,473,234 - 54,473,52749,712,801 - 49,713,680
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433027, LOC100043442
Downstream geneLOC100043449, LOC667927, LOC436421, Zpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E24.bB6Ng01-196E24.g
ACCGA018487GA018488
length476884
definitionB6Ng01-196E24.b B6Ng01-196E24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,473,234 - 54,473,527)(49,712,801 - 49,713,680)
sequence
ctaatctttctaagacttttaacatgaagggatgctgaattttgttaagt
gctttttcagcatataatgaaatgatcgtgtggttctttttttttttttt
ttgagtgtgtttatgtagattatgttgatgaatgtccggatattgaacca
cccctgcatccctgggatgaagccttcttgatcatggtgaatgatcgttt
tgatgtgttcttggattcggtttggaagaattattcataagggaaattgg
tctgaagttctctttctttgttgggtctttgtgttgtttagggatcaagt
aattgtggcttcatagaaagaattgggtagattaccttctcttactattt
tgtagaatagtttgaggagtataggtattaggtcttctttgaaggcctga
tagaactctgcactaaacacatctggttctgggcttttttgttgttgttg
ttttgttttgttttgttttgtttttg

gaattcagccttaagacttcctcctgtctcccactgatggggcctctact
caagccccagggacaccacaaagactaagtaataatggatcagttttttt
tgctcacctatgcatccaggacctagataactgagtcatatagacatagt
tctgttactgtttccctgagttgcaggaaatcctatgatggggacttcca
gttaccagagaaaggtacgaatgaaagaccaaatttgggagttcagactc
catcatagggaacctgacctaagtttaaactcgaataaaactaacaggcc
agtatctagctctagtttccaggctacccgccaaaaaatcttgagcctag
cttcagtttccaggctacctcccaagaagacatgcattcaagttattcct
caaacaaatccagtgtctagcaccagtttccgagattattcaccgaacaa
atctgcatctcccaattacaagctccactttgcctagcaaccacaaatta
ggaggaaaacagaagttatgtttatagtttggctcccagcacaggccagt
tagatgcatgccaagctagaaagactactcttgtcattttctgtaagtcc
ttgtcccgatgagtgttcagggctttttttttttttttttttttttttcc
caccagaactatactatgggttggtggtgagttaagcctaagttagaact
ggtaaataaagactctgttgtgattgctgaccagtcatgaacacttcttg
atactataggatggtgaagaccttaagcctaggttcaagcaagtatttat
agtgggcaggcaaacaagtaagggggggtacacagcttagtacacacctg
atttggggatatatatgagattttgctgcttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54473234_54473527
seq2: B6Ng01-196E24.b_285_527 (reverse)

seq1  CAAA---AATACAAAACAAAAAAAAACAACAACAACAAAAAAATCC---C  44
      ||||   || ||||||||||| ||||||||||||||||||||  ||    
seq2  CAAAAACAAAACAAAACAAAACAAAACAACAACAACAAAAAAGCCCAGAA  50

seq1  TCACAT-TATTTTCT-CA---TTCGATGA-----TAAAAAAAAACAAAAA  84
       || || | |||  | ||   ||| || |     | ||| || ||     
seq2  CCAGATGTGTTTAGTGCAGAGTTCTATCAGGCCTTCAAAGAAGAC-----  95

seq1  ACAAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAAA  134
                      | || | | | |  |   |||| |      ||||
seq2  ----------------CTAATACCTATACTCCTCAAACTATTCTACAAAA  129

seq1  AACAAAGAAAAAAAACCGCCTTGATAAAATCCAACACCCATTTAAAAAAA  184
       |  |||| ||           | |||  |     ||||          |
seq2  TAGTAAGAGAA-----------GGTAATCT-----ACCC----------A  153

seq1  AGTCTTAGAGAGATCATGGATAT-AAGTCACATATTTAAATATGATAAAA  233
      | ||||       ||     ||| ||| |||| |||   |  ||||    
seq2  ATTCTT-------TC-----TATGAAGCCACA-ATT---ACTTGAT----  183

seq1  GCAGTAAAACACAAAAATACTCAAGAGAGAAACAAAATTTCAGACCAATT  283
       |  ||||  ||| ||| || ||| | ||||| | || ||||||||||||
seq2  -CCCTAAACAACACAAAGACCCAACAAAGAAAGAGAACTTCAGACCAATT  232

seq1  TCTCTTATGAA  294
      || ||||||||
seq2  TCCCTTATGAA  243


seq1: chr12_49712801_49713680
seq2: B6Ng01-196E24.g_62_945

seq1  GAATTCAGCCTTAAGACTTCCTCCTGTCTCCCACTGATGGGGCCTCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTAAGACTTCCTCCTGTCTCCCACTGATGGGGCCTCTACT  50

seq1  CAAGCCCCAGGGACACCACAAAGACTAAGTAATAATGGATCAGTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCAGGGACACCACAAAGACTAAGTAATAATGGATCAGTTTTTTT  100

seq1  TGCTCACCTATGCATCCAGGACCTAGATAACTGAGTCATATAGACATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCTATGCATCCAGGACCTAGATAACTGAGTCATATAGACATAGT  150

seq1  TCTGTTACTGTTTCCCTGAGTTGCAGGAAATCCTATGATGGGGACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTGTTTCCCTGAGTTGCAGGAAATCCTATGATGGGGACTTCCA  200

seq1  GTTACCAGAGAAAGGTACGAATGAAAGACCAAATTTGGGAGTTCAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAGAGAAAGGTACGAATGAAAGACCAAATTTGGGAGTTCAGACTC  250

seq1  CATCATAGGGAACCTGACCTAAGTTTAAACTCGAATAAAACTAACAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGGGAACCTGACCTAAGTTTAAACTCGAATAAAACTAACAGGCC  300

seq1  AGTATCTAGCTCTAGTTTCCAGGCTACCCGCCAAAAAATCTTGAGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTAGCTCTAGTTTCCAGGCTACCCGCCAAAAAATCTTGAGCCTAG  350

seq1  CTTCAGTTTCCAGGCTACCTCCCAAGAAGACATGCATTCAAGTTATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTTCCAGGCTACCTCCCAAGAAGACATGCATTCAAGTTATTCCT  400

seq1  CAAACAAATCCAGTGTCTAGCACCAGTTTCCGAGATTATTCACCGAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATCCAGTGTCTAGCACCAGTTTCCGAGATTATTCACCGAACAA  450

seq1  ATCTGCATCTCCCAATTACAAGCTCCACTTTGCCTAGCAACCACAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATCTCCCAATTACAAGCTCCACTTTGCCTAGCAACCACAAATTA  500

seq1  GGAGGAAAACAGAAGTTATGTTTATAGTTTGGCTCCCAGCACAGGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAACAGAAGTTATGTTTATAGTTTGGCTCCCAGCACAGGCCAGT  550

seq1  TAGATGCATGCCAAGCTAGAAAGACTACTCTTGTCATTTTCTGTAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCATGCCAAGCTAGAAAGACTACTCTTGTCATTTTCTGTAAGTCC  600

seq1  TTGTCCCGATGAGTGTTCAGGGCTTTTTTTTTTTTTTTTTTTTTTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCGATGAGTGTTCAGGGCTTTTTTTTTTTTTTTTTTTTTTTTTCC  650

seq1  CACCAGAACTATACTATGGGTTGGTGGTGAGTTAAGCCTAAGTTAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAACTATACTATGGGTTGGTGGTGAGTTAAGCCTAAGTTAGAACT  700

seq1  GGTAAATAAAGACTCTGTTGTGATTGCTGACCAGTCATGAACACTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAAGACTCTGTTGTGATTGCTGACCAGTCATGAACACTTCTTG  750

seq1  ATACTATAGGATGGTGAAGACC-TAAGCCTAGGTTCAAGCAAGTATTTAT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATACTATAGGATGGTGAAGACCTTAAGCCTAGGTTCAAGCAAGTATTTAT  800

seq1  AGT-GGCAGGCAAACAAATAA--GGGGGTACACAGCTTAGTACACACCTG  846
      ||| ||||||||||||| |||  |||||||||||||||||||||||||||
seq2  AGTGGGCAGGCAAACAAGTAAGGGGGGGTACACAGCTTAGTACACACCTG  850

seq1  ATTGGGGGATTATTATGAGATTTTGCCCCTTAAA  880
      ||| ||||||   |||||||||||||  ||||||
seq2  ATTTGGGGATATATATGAGATTTTGCTGCTTAAA  884


| Home | SequenceCutter | Blast | Download |