BAC Information

Click to search

BAC

Clone NameB6Ng01-197N03
Chromosome16 (Build37)
Map Location 43,102,079 - 43,259,699
singlet/doubletdoublet
Overlap genenone
Upstream geneLsamp, Gap43, BC002163
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N03.bB6Ng01-197N03.g
ACCGA019586GA019587
length1,1421,038
definitionB6Ng01-197N03.b B6Ng01-197N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,102,079 - 43,103,224)(43,258,664 - 43,259,699)
sequence
gaattctttaaaatcttgtggttacatagttccatcttttcaaaatatgg
atgtatttgtgacaaggggaacattgtggggcttgtgagatagctcagca
aggaaaggtgcttgtcaacaaggctcatgacttgaggtccacccgtagga
tcctcaaggtggcgaggaccaaccatatgccatgccatgcagacatgtag
acagaagggcaggcacacagacagacagttgaagatgagaaaaatatatt
ttttttaacaactattatctgaaaagataaaaattgaagaataacaatgt
tgttctgtccagagaagataaaacctatctacagataggcataaacttat
gactaaaactaagaaaacagagatgctaaatgattaattttatagagctc
tgcatctgaaatataaatatagatatacttgtgaagaaaacaggagaccc
tagatccccacgatttgtctacactgttggaggttgattaccatcagaag
ctagctaactgaaaatgaaataaagtgtaggtagcactagggtgaagttg
agagggagatctcaccattagtttgtaaagcttgaggtttgcatacatga
ctataacaagactgaccaacaacactgacatttcatgtgatttagttaat
gtgtctgggaacttggtagcagcccagcatcgatatcaaagactgatgat
ttcctaacatgcactgcatattttattttgcactacacatttttatgcag
tacattttatctaacatcaagtttccattttggaatatttcttctttaaa
aatattttggctttctagaatgaatattgttcttatacttgcatttttct
taatgtcttcaaaaaggaattctgaatgggtaaggctacatcaagcatat
ggctactcaaagattagaaaagctgtggccaccacaaataaatattgggt
aacaactctgatggaacatgtgtggttttattatgagaaaagaaaagact
tgcaaggaacttaaataagaaagtaggcctgctgataaacaaaaatacaa
acaatgtatctgctagtgaactggtggtcctgtctgctgctcacttaata
gaaaccactttataagaatacagttttaattcatcacagtat
gaattcaattacactaattaatatttaagaagggctagagatcacatact
gaatgtgggaaactaggccagtcagacatgagcatatggggagggcaaga
tcaacagataaaagtaacaaacaaatcatacataaacgctccaacagaaa
tggaatggagaatataaaataaatgttccagcagacactgaagaggaggt
aaagtaaatggtctaccagacataaaaggaaaatgttccaacacacacaa
gacattttattgcttttgtgtaaacacatatattataaaaattatttttc
caaataagttactaggaaatgttacccctttctaaacacagactttgtca
gggttgtgtgcattcatggcatattgtatttactctccttccccactggc
tcctcacagagaaagctcaataggcctgggtttcccaacagttagttcct
tatggctaagtctatatggatgcccagaagccaatggaaggctgaaacct
tcccgcttcttccttatggttctgagatacggttggtgtcacaccagact
cttttgattgcgagggacttgatatttcacctgcagcacacatttctgct
tcctctttagtatgcgaacattttctaaaggaggcactgctggtgccaca
agtgccttgcttctataatgaaaatggtttgttttcttcctacactgtag
cattcttattccattcattcctcactcttaaacctctgtcctttctgcat
tacaggagtttggaaaagcataatccagaagggcctctggattgcctttc
tgaactgcatgtttttagtgtgaaatgcaatgtcttcctattcatttgag
tggcttttgctatccatatcgcccagaggtgtaagtggaggtcggagtgt
ggaggagatgaaagggccaccccaactgagaactgacctcctctgcccaa
ttctttagcataggataggccggtattaagggaccctgaagaaacagtgt
tgtggcaagacttatggtcatgaagaaaacaacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43102079_43103224
seq2: B6Ng01-197N03.b_46_1187

seq1  GAATTCTTTAAAATCTTGTGGTTACATAGTTCCATCTTTTCAAAATATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATCTTGTGGTTACATAGTTCCATCTTTTCAAAATATGG  50

seq1  ATGTATTTGTGACAAGGGGAACATTGTGGGGCTTGTGAGATAGCTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGTGACAAGGGGAACATTGTGGGGCTTGTGAGATAGCTCAGCA  100

seq1  AGGAAAGGTGCTTGTCAACAAGGCTCATGACTTGAGGTCCACCCGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTGCTTGTCAACAAGGCTCATGACTTGAGGTCCACCCGTAGGA  150

seq1  TCCTCAAGGTGGCGAGGACCAACCATATGCCATGCCATGCAGACATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGGTGGCGAGGACCAACCATATGCCATGCCATGCAGACATGTAG  200

seq1  ACAGAAGGGCAGGCACACAGACAGACAGTTGAAGATGAGAAAAATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGGCAGGCACACAGACAGACAGTTGAAGATGAGAAAAATATATT  250

seq1  TTTTTTAACAACTATTATCTGAAAAGATAAAAATTGAAGAATAACAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAACAACTATTATCTGAAAAGATAAAAATTGAAGAATAACAATGT  300

seq1  TGTTCTGTCCAGAGAAGATAAAACCTATCTACAGATAGGCATAAACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCCAGAGAAGATAAAACCTATCTACAGATAGGCATAAACTTAT  350

seq1  GACTAAAACTAAGAAAACAGAGATGCTAAATGATTAATTTTATAGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAACTAAGAAAACAGAGATGCTAAATGATTAATTTTATAGAGCTC  400

seq1  TGCATCTGAAATATAAATATAGATATACTTGTGAAGAAAACAGGAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGAAATATAAATATAGATATACTTGTGAAGAAAACAGGAGACCC  450

seq1  TAGATCCCCACGATTTGTCTACACTGTTGGAGGTTGATTACCATCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCCACGATTTGTCTACACTGTTGGAGGTTGATTACCATCAGAAG  500

seq1  CTAGCTAACTGAAAATGAAATAAAGTGTAGGTAGCACTAGGGTGAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAACTGAAAATGAAATAAAGTGTAGGTAGCACTAGGGTGAAGTTG  550

seq1  AGAGGGAGATCTCACCATTAGTTTGTAAAGCTTGAGGTTTGCATACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGATCTCACCATTAGTTTGTAAAGCTTGAGGTTTGCATACATGA  600

seq1  CTATAACAAGACTGACCAACAACACTGACATTTCATGTGATTTAGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACAAGACTGACCAACAACACTGACATTTCATGTGATTTAGTTAAT  650

seq1  GTGTCTGGGAACTTGGTAGCAGCCCAGCATCGATATCAAAGACTGATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGGAACTTGGTAGCAGCCCAGCATCGATATCAAAGACTGATGAT  700

seq1  TTCCTAACATGCACTGCATATTTTATTTTGCACTACACATTTTTATGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACATGCACTGCATATTTTATTTTGCACTACACATTTTTATGCAG  750

seq1  TACATTTTATCTAACATCAAGTTTCCATTTTGGAATATTTCTTCTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATCTAACATCAAGTTTCCATTTTGGAATATTTCTTCTTTAAA  800

seq1  AATATTTTGGCTTTCTAGAATGAATATTGTTCTTATACTTGCA-TTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATATTTTGGCTTTCTAGAATGAATATTGTTCTTATACTTGCATTTTTCT  850

seq1  TAATGTCTTCAAAAAGGAATTCTGAATGGGTAAGGCTACATCAAGCATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTTCAAAAAGGAATTCTGAATGGGTAAGGCTACATCAAGCATAT  900

seq1  GGCTACTCAAAGATTAGAAAAGCTGTGGCCACCACAAATAAATATT-GGT  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCTACTCAAAGATTAGAAAAGCTGTGGCCACCACAAATAAATATTGGGT  950

seq1  AACAACTCTGATGGAACATGTGTGG-TTTATTATGAGAAAAGAAAAAGAC  997
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  AACAACTCTGATGGAACATGTGTGGTTTTATTATGAGAAAAG-AAAAGAC  999

seq1  TTGCAAGGAACTTAAATAAGAAAGTAAGCCTGCTGATAAACAAAAATACA  1047
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGCAAGGAACTTAAATAAGAAAGTAGGCCTGCTGATAAACAAAAATACA  1049

seq1  AACCAATGTATCTGCTAGTGAACTGGTGGTCTTGTCTGCTTGCTTCCACT  1097
      || |||||||||||||||||||||||||||| ||||||| ||||  ||||
seq2  AA-CAATGTATCTGCTAGTGAACTGGTGGTCCTGTCTGC-TGCT--CACT  1095

seq1  TAATAGAAACCACTTTTATAAG-ATACAGTTTTAATATCATCACCAGTAT  1146
      ||||||||||||| |||||||| ||||||||||||| |||||| ||||||
seq2  TAATAGAAACCAC-TTTATAAGAATACAGTTTTAAT-TCATCA-CAGTAT  1142

seq1: chr16_43258664_43259699
seq2: B6Ng01-197N03.g_68_1105 (reverse)

seq1  TTTTTGTTTGTTTTCTCCATGACCATAAGTCTTGCCAC-ACACTGTTTCT  49
      |||||| ||||||||| ||||||||||||||||||||| |||||||||||
seq2  TTTTTG-TTGTTTTCTTCATGACCATAAGTCTTGCCACAACACTGTTTCT  49

seq1  TCAGGGTCCCTTAATTACCGG-CTAT-CTATGCTAAAGAATTTGGCAGAG  97
      |||||||||||||| |||||| |||| ||||||||||||||| |||||||
seq2  TCAGGGTCCCTTAA-TACCGGCCTATCCTATGCTAAAGAATTGGGCAGAG  98

seq1  GAGTTCAGTTCTCAGTTTGGGTGGCCC-TTCATCTCCTCCACACTCCGAC  146
      ||| ||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  GAGGTCAGTTCTCAGTTGGGGTGGCCCTTTCATCTCCTCCACACTCCGAC  148

seq1  CTCCACTTACACCTCTGGGCGATATGGATAGCAAAAGCCACTCAAATGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTACACCTCTGGGCGATATGGATAGCAAAAGCCACTCAAATGAA  198

seq1  TAGGAAGACATTGCATTTCACACTAAAAACATGCAGTTCAGAAAGGCAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACATTGCATTTCACACTAAAAACATGCAGTTCAGAAAGGCAAT  248

seq1  CCAGAGGCCCTTCTGGATTATGCTTTTCCAAACTCCTGTAATGCAGAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCCCTTCTGGATTATGCTTTTCCAAACTCCTGTAATGCAGAAAG  298

seq1  GACAGAGGTTTAAGAGTGAGGAATGAATGGAATAAGAATGCTACAGTGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGTTTAAGAGTGAGGAATGAATGGAATAAGAATGCTACAGTGTA  348

seq1  GGAAGAAAACAAACCATTTTCATTATAGAAGCAAGGCACTTGTGGCACCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAACAAACCATTTTCATTATAGAAGCAAGGCACTTGTGGCACCA  398

seq1  GCAGTGCCTCCTTTAGAAAATGTTCGCATACTAAAGAGGAAGCAGAAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTCCTTTAGAAAATGTTCGCATACTAAAGAGGAAGCAGAAATG  448

seq1  TGTGCTGCAGGTGAAATATCAAGTCCCTCGCAATCAAAAGAGTCTGGTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCAGGTGAAATATCAAGTCCCTCGCAATCAAAAGAGTCTGGTGT  498

seq1  GACACCAACCGTATCTCAGAACCATAAGGAAGAAGCGGGAAGGTTTCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAACCGTATCTCAGAACCATAAGGAAGAAGCGGGAAGGTTTCAGC  548

seq1  CTTCCATTGGCTTCTGGGCATCCATATAGACTTAGCCATAAGGAACTAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTGGCTTCTGGGCATCCATATAGACTTAGCCATAAGGAACTAAC  598

seq1  TGTTGGGAAACCCAGGCCTATTGAGCTTTCTCTGTGAGGAGCCAGTGGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGAAACCCAGGCCTATTGAGCTTTCTCTGTGAGGAGCCAGTGGGG  648

seq1  AAGGAGAGTAAATACAATATGCCATGAATGCACACAACCCTGACAAAGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGTAAATACAATATGCCATGAATGCACACAACCCTGACAAAGTC  698

seq1  TGTGTTTAGAAAGGGGTAACATTTCCTAGTAACTTATTTGGAAAAATAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGAAAGGGGTAACATTTCCTAGTAACTTATTTGGAAAAATAAT  748

seq1  TTTTATAATATATGTGTTTACACAAAAGCAATAAAATGTCTTGTGTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATATATGTGTTTACACAAAAGCAATAAAATGTCTTGTGTGTGT  798

seq1  TGGAACATTTTCCTTTTATGTCTGGTAGACCATTTACTTTACCTCCTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATTTTCCTTTTATGTCTGGTAGACCATTTACTTTACCTCCTCTT  848

seq1  CAGTGTCTGCTGGAACATTTATTTTATATTCTCCATTCCATTTCTGTTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTGCTGGAACATTTATTTTATATTCTCCATTCCATTTCTGTTGG  898

seq1  AGCGTTTATGTATGATTTGTTTGTTACTTTTATCTGTTGATCTTGCCCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTATGTATGATTTGTTTGTTACTTTTATCTGTTGATCTTGCCCTC  948

seq1  CCCATATGCTCATGTCTGACTGGCCTAGTTTCCCACATTCAGTATGTGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGCTCATGTCTGACTGGCCTAGTTTCCCACATTCAGTATGTGAT  998

seq1  CTCTAGCCCTTCTTAAATATTAATTAGTGTAATTGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCCTTCTTAAATATTAATTAGTGTAATTGAATTC  1038