BAC Information

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BAC

Clone NameB6Ng01-198E04
Chromosome16 (Build37)
Map Location 31,138,486 - 31,270,591
singlet/doubletdoublet
Overlap geneCentb2, Ppp1r2
Upstream geneEG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
Downstream geneApod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198E04.bB6Ng01-198E04.g
ACCGA019903GA019904
length1,163423
definitionB6Ng01-198E04.b B6Ng01-198E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,269,444 - 31,270,591)(31,138,486 - 31,138,914)
sequence
gaattcagggtcatccttagctgcatagccagttaaaggccaggctaggc
taggtctctctgtctgtctctctatctctgtctgactgtctctctctctc
tctcacacacacacacacatacacccgaaggtgcttgaattccactgata
taatttaagatataattatgctctactataacattgtctttctgtctact
caagaatatggagtattaaaaagtcaaagctaattaaaataaaaagatta
tttcctaaaacttaccatttgtttgctttattgttaagtcttggtttaat
tttaattgtggtttcaggcttcaaagtcttgaatctttatttaaaaagac
aactgtttattgaagtgtgaaattaaagttaaattctttgaagcaaaact
cagctggccactcgagcacagccaaaagtatgaaatatgccaggaaaagc
agcaagaagtactggaggtccttgagataacaacattggaaccaacaaag
taaaagtaatatgtactgtacaggacaagatttaagcagtctgcaaatca
gtcaccgagagggagggcgaaattgaaattagcaagtgccttggccatca
caggctatcatttcctggtacccttattttttgtctgtggaatttgtgac
ccagaaaatcatgtagttcatgatgatattttaattgaattcatgtttgc
tccttgggttttgttactctggcactgccattaattactttaaaatggta
ggaatactaatttccatgtacattgtctctattgacagtttcttcttttc
atttgctttctacctaagaattagcaattttggggcttgtattaattttt
agtgtcctgctctccattttcaagataatctttcttgtatttgaatgtga
catttctaagattctttttcctccttattttgtacttaaggaatgaaggt
tagtataactttgaattccatttaagtaaaacattaataaatgcaaaaca
gacaggaaaaagttaaggattcagattgtattgtagttataggatcagtt
aatttcaacttttttattgttgttaatgtgctttgccaatttgccgtgca
agggatggcaaacatttccgaccattgtaagtaagttcgtcctgctaata
gaatattgaggga
ccgtgagacattattacgtaaactcatagttagaagggggtgagctgaga
ggccatctttgtgctctaagatgacctctcaggaaatacataattactat
gtttaagtttgaaaataatggatattttagctaaacagcattacacataa
agtcgatagcattacaccatttgctttaaaaaaaaatcatgtactaccta
ttttccaaccactggataaaagctggagacaatataggagtcaaactata
agtggcatgcaagcacgaggacctgagttcaattcccagaaccctggtga
acaaaagctagcttgttggcacatgcttaacatctccactttggagaagg
aaagagagcaagatccctggggctttgccagttagctggcctagcctagg
tccaggcaggaaggagggaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31269444_31270591
seq2: B6Ng01-198E04.b_44_1206 (reverse)

seq1  TCCCTCATTA-TCTAATAGCACGACG-ACTTACTTTACAT-GTCGGAATT  47
      ||||||| || |||| ||||| |||| ||||||||   || ||||||| |
seq2  TCCCTCAATATTCTATTAGCAGGACGAACTTACTTACAATGGTCGGAAAT  50

seq1  GTTTG-CATCCTTTGCACGGCAAAT--GCAAAGCACATTA-----CACAT  89
      ||||| ||||| |||||||||||||  |||||||||||||      | | 
seq2  GTTTGCCATCCCTTGCACGGCAAATTGGCAAAGCACATTAACAACAATAA  100

seq1  AAAAGTTGAATTTACCTGAT-CTATAACTACAATAC-ATCTGAATCC-TA  136
      |||||||||| ||| ||||| ||||||||||||||| |||||||||| ||
seq2  AAAAGTTGAAATTAACTGATCCTATAACTACAATACAATCTGAATCCTTA  150

seq1  ACTTTTTCCTGTCTGTTTTGCATTTATT-ATGTTTTACTTTAAATGGAAT  185
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  ACTTTTTCCTGTCTGTTTTGCATTTATTAATGTTTTAC-TTAAATGGAAT  199

seq1  TCAAAGTTATACTAACCTTCATTTCCTTAGTACAAAATAAGGAGGAAAAG  235
      ||||||||||||||||||||||| | | ||||||||||||||||||||| 
seq2  TCAAAGTTATACTAACCTTCATTCCTTAAGTACAAAATAAGGAGGAAAAA  249

seq1  AAATCTTAGAAATGTCACATTCAAATACAAGAAAGATTATCTTGAAAATG  285
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTAGAAATGTCACATTCAAATACAAGAAAGATTATCTTGAAAATG  299

seq1  GAGAGCAGGACACT-AAAATTAATACAAGCCCCAAAATTGCTAATTCTTA  334
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGACACTAAAAATTAATACAAGCCCCAAAATTGCTAATTCTTA  349

seq1  GGTAGAAAGCAAATGAAAAGAAGAAACTGTCAATAGAGACAATGTACATG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGCAAATGAAAAGAAGAAACTGTCAATAGAGACAATGTACATG  399

seq1  GAAATTAGTATTCCTACCATTTTAAAGTAATTAATGGCAGTGCCAGAGTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGTATTCCTACCATTTTAAAGTAATTAATGGCAGTGCCAGAGTA  449

seq1  ACAAAACCCAAGGAGCAAACATGAATTCAATTAAAATATCATCATGAACT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCAAGGAGCAAACATGAATTCAATTAAAATATCATCATGAACT  499

seq1  ACATGATTTTCTGGGTCACAAATTCCACAGACAAAAAATAAGGGTACCAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTTCTGGGTCACAAATTCCACAGACAAAAAATAAGGGTACCAG  549

seq1  GAAATGATAGCCTGTGATGGCCAAGGCACTTGCTAATTTCAATTTCGCCC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATAGCCTGTGATGGCCAAGGCACTTGCTAATTTCAATTTCGCCC  599

seq1  TCCCTCTCGGTGACTGATTTGCAGACTGCTTAAATCTTGTCCTGTACAGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCGGTGACTGATTTGCAGACTGCTTAAATCTTGTCCTGTACAGT  649

seq1  ACATATTACTTTTACTTTGTTGGTTCCAATGTTGTTATCTCAAGGACCTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTACTTTTACTTTGTTGGTTCCAATGTTGTTATCTCAAGGACCTC  699

seq1  CAGTACTTCTTGCTGCTTTTCCTGGCATATTTCATACTTTTGGCTGTGCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTCTTGCTGCTTTTCCTGGCATATTTCATACTTTTGGCTGTGCT  749

seq1  CGAGTGGCCAGCTGAGTTTTGCTTCAAAGAATTTAACTTTAATTTCACAC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGCCAGCTGAGTTTTGCTTCAAAGAATTTAACTTTAATTTCACAC  799

seq1  TTCAATAAACAGTTGTCTTTTTAAATAAAGATTCAAGACTTTGAAGCCTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAACAGTTGTCTTTTTAAATAAAGATTCAAGACTTTGAAGCCTG  849

seq1  AAACCACAATTAAAATTAAACCAAGACTTAACAATAAAGCAAACAAATGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAATTAAAATTAAACCAAGACTTAACAATAAAGCAAACAAATGG  899

seq1  TAAGTTTTAGGAAATAATCTTTTTATTTTAATTAGCTTTGACTTTTTAAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTAGGAAATAATCTTTTTATTTTAATTAGCTTTGACTTTTTAAT  949

seq1  ACTCCATATTCTTGAGTAGACAGAAAGACAATGTTATAGTAGAGCATAAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATATTCTTGAGTAGACAGAAAGACAATGTTATAGTAGAGCATAAT  999

seq1  TATATCTTAAATTATATCAGTGGAATTCAAGCACCTTCGGGTGTATGTGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTAAATTATATCAGTGGAATTCAAGCACCTTCGGGTGTATGTGT  1049

seq1  GTGTGTGTGTGAGAGAGAGAGAGAGACAGTCAGACAGAGATAGAGAGACA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGAGAGAGAGAGAGAGACAGTCAGACAGAGATAGAGAGACA  1099

seq1  GACAGAGAGACCTAGCCTAGCCTGGCCTTTAACTGGCTATGCAGCTAAGG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGACCTAGCCTAGCCTGGCCTTTAACTGGCTATGCAGCTAAGG  1149

seq1  ATGACCCTGAATTC  1148
      ||||||||||||||
seq2  ATGACCCTGAATTC  1163

seq1: chr16_31138486_31138914
seq2: B6Ng01-198E04.g_66_494

seq1  GAATTCCCGTGAGACATTATTACGTAAACTCATAGTTAGAAGGGGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTGAGACATTATTACGTAAACTCATAGTTAGAAGGGGGTGAG  50

seq1  CTGAGAGGCCATCTTTGTGCTCTAAGATGACCTCTCAGGAAATACATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCCATCTTTGTGCTCTAAGATGACCTCTCAGGAAATACATAAT  100

seq1  TACTATGTTTAAGTTTGAAAATAATGGATATTTTAGCTAAACAGCATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTTTAAGTTTGAAAATAATGGATATTTTAGCTAAACAGCATTAC  150

seq1  ACATAAAGTCGATAGCATTACACCATTTGCTTTAAAAAAAAATCATGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGTCGATAGCATTACACCATTTGCTTTAAAAAAAAATCATGTAC  200

seq1  TACCTATTTTCCAACCACTGGATAAAAGCTGGAGACAATATAGGAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTTTCCAACCACTGGATAAAAGCTGGAGACAATATAGGAGTCAA  250

seq1  ACTATAAGTGGCATGCAAGCACGAGGACCTGAGTTCAATTCCCAGAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAGTGGCATGCAAGCACGAGGACCTGAGTTCAATTCCCAGAACCC  300

seq1  TGGTGAACAAAAGCTAGCTTGTTGGCACATGCTTAACATCTCCACTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACAAAAGCTAGCTTGTTGGCACATGCTTAACATCTCCACTTTGG  350

seq1  AGAAGGAAAGAGAGCAAGATCCCTGGGGCTTTGCCAGTTAGCTGGCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAGAGAGCAAGATCCCTGGGGCTTTGCCAGTTAGCTGGCCTAG  400

seq1  CCTAGGTCCAGGCAGGAAGGAGGGAGGAA  429
      |||||||||||||||||||||||||||||
seq2  CCTAGGTCCAGGCAGGAAGGAGGGAGGAA  429