BAC Information

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BAC

Clone NameB6Ng01-198L17
Chromosome16 (Build37)
Map Location 75,234,848 - 75,388,539
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198L17.bB6Ng01-198L17.g
ACCGA020254GA020255
length1,1621,199
definitionB6Ng01-198L17.b B6Ng01-198L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,234,848 - 75,235,995)(75,387,366 - 75,388,539)
sequence
gaattccaggagaatacaatctaaaacaggcagggatataattgaaaata
cagtgaataaggccaggaaagccgtagaaacaggtggatagttggacagg
gatttctcataaaatacaagtagatgagtgtctaaaaaggaaaccaacta
cttgtactcaaataagaacacattagtagattcaagtaaaattgttgctt
ggtgatattgagagtcctgttattgtgggtaggtgggaacttgacagaac
actattaaaaactaaatctgtctaggctaagaatgatctatgtccataca
aatatcattttgtattcttttgagaaattttgttataaaaggaagcaaaa
gaatggaagaatgtataagaaggacagattcctttctttctcggcttgat
tacatggacacatactgcaagacacaagcctgatagataatttatccata
aagtcatctaaaatcagccacagcttagaaaggtaggaaataaaaaaaaa
aatcaatgttcctcatgtgattgataggtaatgcggtaggctgtacatct
ggaagagttgtctttggtctgtatggtggcactgtgtccccagaaggtag
gatgttgtggatttagcctaccttgtgggtggtgcatgcatattttataa
gtaacttctggtttttcaataaagtacaaagaaagattatgaaatattag
ataatacaaaaaatcatcgacagattcaacacaatccctaccaaaatcct
aacagcattcatcccagaactagcagagaaatcctaagattcatacaaaa
gcagaaaaaaaatccgagtagtgaaaataatgcaagaaaactaggagggc
tagagctatcataaaccatactaactgaagtaacatggtacagggagaaa
aaacagacacaacatcaccagaacaggatagaaagttcccagaaatataa
ttacacagcttcatttccctttgttttgcaacaaagagttcaaagcattt
aaatgaaaaagttaagggggcaggtttttcaaacgatcgtgcttgttgaa
acactgaagtattgcacatgtagaagatttgcacttgcttcataacggcc
tccatttgccacaaccaattcaaatgaatcaggaccagaaatgcattgaa
cttggtactctc

gaattcacagtgctacataaggtcatgattttatgtaaccacaggctact
ggggtagatcagaaagtcattttattaccagaatacagtgtattttatga
agaccaaagcaaaggttcagtgaattatgtaaggtgatcaaaacacaata
aataataggccctaccacttagtcaatgtgaaaaatcactgtgtgaaaaa
tatataaaaaactgaaaataatgggcttaaataaatatttctagcccaga
gcttaaaaagaaaaaccatgtttggtagtgctcttattaccagtatgatg
caagtaaatatatcataaacccattgttttgagtagtaactgtgcttgag
gagttgtataggggtcagtgacatggctcagtgggtactgtatcagtgac
tttgtgtagatatgataaaaataccatttccaaaacaattaacagaatac
atagtctatttcagttgaggatttcagaagaagagctcaaaatagcagta
caggcctgggaacagatggtgacacaggtgactaagaaatcatagcttca
accacacacatgaaataaatagtgactggaaatttagtgagtctgtggac
tctcaaagtcagccatcctgtgatctgtgtcctccagaaaggcttcttgt
tttaaaaggtctgtaatctctttaaataatgccagccaccaagaaccaag
agggactaaatcttcagtacatgagcctatgggaactattttttactcaa
accacatactcattgattataataatcaattatttcctggtgggatttgc
attgagatctttgatttcaaatcaatacctttagtgtacaaaataggtca
acaagcattagtaatttgtgtactgttacttaagtattttaaaagtttaa
cacatttttttatttttaatctaaaagtgcaactggtaggtactcactaa
aattttcaactatagtttatggactgcaaaataatttcttaaaattctat
attatttgagcaaatgaacatgtcatgaaactggatgggaatgggtatga
aattaaagagggaaaacacattttcaaaatgaaaaaagaaaggtattagt
tcccatatatcttgacattgagtttattctgtgtattagcctattaacct
gagaccaattttaagagttaatgtgccatggtttaaccttctccaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75234848_75235995
seq2: B6Ng01-198L17.b_49_1210

seq1  GAATTCCAGGAGAATACAATCTAAAACAGGCAGGGATATAATTGAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAATACAATCTAAAACAGGCAGGGATATAATTGAAAATA  50

seq1  CAGTGAATAAGGCCAGGAAAGCCGTAGAAACAGGTGGATAGTTGGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATAAGGCCAGGAAAGCCGTAGAAACAGGTGGATAGTTGGACAGG  100

seq1  GATTTCTCATAAAATACAAGTAGATGAGTGTCTAAAAAGGAAACCAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCATAAAATACAAGTAGATGAGTGTCTAAAAAGGAAACCAACTA  150

seq1  CTTGTACTCAAATAAGAACACATTAGTAGATTCAAGTAAAATTGTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTCAAATAAGAACACATTAGTAGATTCAAGTAAAATTGTTGCTT  200

seq1  GGTGATATTGAGAGTCCTGTTATTGTGGGTAGGTGGGAACTTGACAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATTGAGAGTCCTGTTATTGTGGGTAGGTGGGAACTTGACAGAAC  250

seq1  ACTATTAAAAACTAAATCTGTCTAGGCTAAGAATGATCTATGTCCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAAAACTAAATCTGTCTAGGCTAAGAATGATCTATGTCCATACA  300

seq1  AATATCATTTTGTATTCTTTTGAGAAATTTTGTTATAAAAGGAAGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTTGTATTCTTTTGAGAAATTTTGTTATAAAAGGAAGCAAAA  350

seq1  GAATGGAAGAATGTATAAGAAGGACAGATTCCTTTCTTTCTCGGCTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGAATGTATAAGAAGGACAGATTCCTTTCTTTCTCGGCTTGAT  400

seq1  TACATGGACACATACTGCAAGACACAAGCCTGATAGATAATTTATCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGACACATACTGCAAGACACAAGCCTGATAGATAATTTATCCATA  450

seq1  AAGTCATCTAAAATCAGCCACAGCTTAGAAAGGTAGGAAATAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTAAAATCAGCCACAGCTTAGAAAGGTAGGAAATAAAAAAAAA  500

seq1  AATCAATGTTCCTCATGTGATTGATAGGTAATGCGGTAGGCTGTACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGTTCCTCATGTGATTGATAGGTAATGCGGTAGGCTGTACATCT  550

seq1  GGAAGAGTTGTCTTTGGTCTGTATGGTGGCACTGTGTCCCCAGAAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTTGTCTTTGGTCTGTATGGTGGCACTGTGTCCCCAGAAGGTAG  600

seq1  GATGTTGTGGATTTAGCCTACCTTGTGGGTGGTGCATGCATATTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTGGATTTAGCCTACCTTGTGGGTGGTGCATGCATATTTTATAA  650

seq1  GTAACTTCTGGTTTTTCAATAAAGTACAAAGAAAGATTATGAAATATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGGTTTTTCAATAAAGTACAAAGAAAGATTATGAAATATTAG  700

seq1  ATAATACAAAAAATCATCGACAGATTCAACACAATCCCTACCAAAATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAAAAAATCATCGACAGATTCAACACAATCCCTACCAAAATCCT  750

seq1  AACAGCATTCATCCCAGAACTAGCAGAGAAATCCTAAGATTCATACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATTCATCCCAGAACTAGCAGAGAAATCCTAAGATTCATACAAAA  800

seq1  GCAGAAAAAAAATCCGAGTAGTGAAAATAATGCAAGAAAACTAGGAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAAAAATCCGAGTAGTGAAAATAATGCAAGAAAACTAGGAGGGC  850

seq1  TAGAGCTATCATAAACCATACTAACTGAAGTAACATGGTACAGGGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTATCATAAACCATACTAACTGAAGTAACATGGTACAGGGAGAAA  900

seq1  AAACAGACACAAACATCAACAGAACAGGATAGAAAG-TCCCAGAAATAT-  948
      |||||||||| ||||||| ||||||||||||||||| |||||||||||| 
seq2  AAACAGACAC-AACATCACCAGAACAGGATAGAAAGTTCCCAGAAATATA  949

seq1  ATTACACAGCTTCAATTCCCTTTG-TTTGC-ACAAAGAGTTCAAAGCA-T  995
      |||||||||||||| ||||||||| ||||| ||||||||||||||||| |
seq2  ATTACACAGCTTCATTTCCCTTTGTTTTGCAACAAAGAGTTCAAAGCATT  999

seq1  TAAATGAAAAAGT--AAGGGGCAGGTTTTTCAAACGATCGTGC-TGT--G  1040
      |||||||||||||  | |||||||||||||||||||||||||| |||   
seq2  TAAATGAAAAAGTTAAGGGGGCAGGTTTTTCAAACGATCGTGCTTGTTGA  1049

seq1  AACACTG-AGTA-TGCACATGTAGAAGAATGGAACTTGGTTCATAACG--  1086
      ||||||| |||| ||||||||||||||| | | ||||| |||||||||  
seq2  AACACTGAAGTATTGCACATGTAGAAGATTTGCACTTGCTTCATAACGGC  1099

seq1  CTCAATTTGCACAAAACAATTCAAAATTGATCAAGGACCAG-AATGCAT-  1134
      ||| ||||||   || |||||||||  |||   |||||||| ||||||| 
seq2  CTCCATTTGCCACAACCAATTCAAA--TGAATCAGGACCAGAAATGCATT  1147

seq1  -GACTTGGAACTCTC  1148
        |||||| ||||||
seq2  GAACTTGGTACTCTC  1162


seq1: chr16_75387366_75388539
seq2: B6Ng01-198L17.g_70_1268 (reverse)

seq1  GTATT---GAAGGTTAA--CAT-GCACTATTAACTCTTAAAAATTGGTCT  44
      |||||   |||||||||  ||| |||| |||||||||| |||||||||||
seq2  GTATTGGAGAAGGTTAAACCATGGCAC-ATTAACTCTT-AAAATTGGTCT  48

seq1  CA-GTTAATTAGCT-ATACACAGAA-AAACTTCATGTCAAG-TATAT-GG  89
      || ||||||  ||| |||||||||| |||||  |||||||| ||||| ||
seq2  CAGGTTAATAGGCTAATACACAGAATAAACTCAATGTCAAGATATATGGG  98

seq1  AACT-ATA-CTTTC-TTTTCAATTTTGAAA---TGTTTTTCCTCTTTTAA  133
      |||| ||| ||||| ||||  |||||||||   |||||| |||| |||||
seq2  AACTAATACCTTTCTTTTTTCATTTTGAAAATGTGTTTTCCCTC-TTTAA  147

seq1  TTTCATA-CCATTTCCAT-CAGTTTCATGACATGTTCATTTGCTC-AATA  180
      ||||||| ||||| |||| |||||||||||||||||||||||||| ||||
seq2  TTTCATACCCATTCCCATCCAGTTTCATGACATGTTCATTTGCTCAAATA  197

seq1  ATATAGAATTTTAAGAAA-TATTTTGCAGT-CATAAACTATAGTTGAAAA  228
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  ATATAGAATTTTAAGAAATTATTTTGCAGTCCATAAACTATAGTTGAAAA  247

seq1  -TTTAGTGAGTA-CTACCAGTTGCAC-TTTAGATTAAAAAT-AAAAAATG  274
       ||||||||||| ||||||||||||| |||||||||||||| ||||||||
seq2  TTTTAGTGAGTACCTACCAGTTGCACTTTTAGATTAAAAATAAAAAAATG  297

seq1  TGTTAAACTTTTAAAATAC-TAAGTAACAGTACACAAATTACTAATGCTT  323
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTAAACTTTTAAAATACTTAAGTAACAGTACACAAATTACTAATGCTT  347

seq1  GTTGACCTATTTTGTACACTAAAGGTATTGATTTGAAATCAAAGATCTCA  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCTATTTTGTACACTAAAGGTATTGATTTGAAATCAAAGATCTCA  397

seq1  ATGC-AATCCCACCAGGAAATAATTGATTATTATAATCAATGAGTATGTG  422
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATCCCACCAGGAAATAATTGATTATTATAATCAATGAGTATGTG  447

seq1  GTTTGAGTAAAAAATAGTTCCCATAGGCTCATGTACTGAAGATTTAGTCC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTAAAAAATAGTTCCCATAGGCTCATGTACTGAAGATTTAGTCC  497

seq1  CTCTTGGTTCTTGGTGGCTGGCATTATTTAAAGAGATTACAGACCTTTTA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTTCTTGGTGGCTGGCATTATTTAAAGAGATTACAGACCTTTTA  547

seq1  AAACAAGAAGCCTTTCTGGAGGACACAGATCACAGGATGGCTGACTTTGA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGCCTTTCTGGAGGACACAGATCACAGGATGGCTGACTTTGA  597

seq1  GAGTCCACAGACTCACTAAATTTCCAGTCACTATTTATTTCATGTGTGTG  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACAGACTCACTAAATTTCCAGTCACTATTTATTTCATGTGTGTG  647

seq1  GTTGAAGCTATGATTTCTTAGTCACCTGTGTCACCATCTGTTCCCAGGCC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCTATGATTTCTTAGTCACCTGTGTCACCATCTGTTCCCAGGCC  697

seq1  TGTACTGCTATTTTGAGCTCTTCTTCTGAAATCCTCAACTGAAATAGACT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCTATTTTGAGCTCTTCTTCTGAAATCCTCAACTGAAATAGACT  747

seq1  ATGTATTCTGTTAATTGTTTTGGAAATGGTATTTTTATCATATCTACACA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTGTTAATTGTTTTGGAAATGGTATTTTTATCATATCTACACA  797

seq1  AAGTCACTGATACAGTACCCACTGAGCCATGTCACTGACCCCTATACAAC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTGATACAGTACCCACTGAGCCATGTCACTGACCCCTATACAAC  847

seq1  TCCTCAAGCACAGTTACTACTCAAAACAATGGGTTTATGATATATTTACT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGCACAGTTACTACTCAAAACAATGGGTTTATGATATATTTACT  897

seq1  TGCATCATACTGGTAATAAGAGCACTACCAAACATGGTTTTTCTTTTTAA  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATACTGGTAATAAGAGCACTACCAAACATGGTTTTTCTTTTTAA  947

seq1  GCTCTGGGCTAGAAATATTTATTTAAGCCCATTATTTTCAGTTTTTTATA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGCTAGAAATATTTATTTAAGCCCATTATTTTCAGTTTTTTATA  997

seq1  TATTTTTCACACAGTGATTTTTCACATTGACTAAGTGGTAGGGCCTATTA  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCACACAGTGATTTTTCACATTGACTAAGTGGTAGGGCCTATTA  1047

seq1  TTTATTGTGTTTTGATCACCTTACATAATTCACTGAACCTTTGCTTTGGT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGTTTTGATCACCTTACATAATTCACTGAACCTTTGCTTTGGT  1097

seq1  CTTCATAAAATACACTGTATTCTGGTAATAAAATGACTTTCTGATCTACC  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAAATACACTGTATTCTGGTAATAAAATGACTTTCTGATCTACC  1147

seq1  CCAGTAGCCTGTGGTTACATAAAATCATGACCTTATGTAGCACTGTGAAT  1172
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGCCTGTGGTTACATAAAATCATGACCTTATGTAGCACTGTGAAT  1197

seq1  TC  1174
      ||
seq2  TC  1199


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