BAC Information

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BAC

Clone NameB6Ng01-199B06
Chromosome16 (Build37)
Map Location 29,235,473 - 29,236,529
singlet/doubletsinglet
Overlap geneAtp13a5
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls
Downstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199B06.bB6Ng01-199B06.g
ACCGA020507GA020508
length1,1121,062
definitionB6Ng01-199B06.b B6Ng01-199B06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttacgtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctccataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcatcgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttacatac
agatctttcactttccttagtttagagtcaggccaagatatttttatatt
atttgttgactattgagaagggtgttgtttccttaatttcctttctcagc
ctgtttattctttgtatagaagaatgccattgacttgttgagtttatttt
actttccagctactcaccgaagctgttatcaagtttaagaagtctctggt
agaattttttag
gaattcttattgttactgaggcttccatgaggaccttatggaaggaacat
gggttggtaagggtctagatctctccagtagagatctagccaggtcagcc
tgtttctgatgggcagaacttcctcggcatcaggagaaagggtggagggc
cttttgaatttcagagaatgactttggtcctggcaatgcagagaacatgg
ggtgtcagggatgagaaatcaaaggaaggcttgaagtaccaagcaggtag
aagagtctttaaaacagaggcaggtgctgttcagcggagcatgaagaaca
gagaagactggaggagacaggcactgtccaaggcagccaacgagctttgt
gctttctgccaaaataacagggagacactgaaggttctttggaaggacac
ttcaatcagattaatttaacgagggcaggaaagcaatggagagacagtta
ggaagtgaaaactcaggcgagccatccacatcctgtgtgttacaaagctt
cacgatgtgcttggctcaggaacagaagctaagcatgatgctgtgctgag
ttgttaagaagtgaagaaagcctactactgtacaagtgaataattccaaa
ctgagagtattcccaagctcgtgatagagaagagccttcctcactaaggt
ggcagtggcattgagatctaagtggaccagagtatgcccccaatttctcc
aaagccaatgtgctgcctctcaaagcccaggtagagactgtctctgctcg
gaggaaacagatgaacaagcagtgccttgaaagagcttatcccaggacat
ggatggaaatagaagtgagtgactggagcagtggttctcaatctcccgaa
tgctgtgacctttaatacagtttctcatatcatggtgacccacaaccata
aaatattttccttactacttcatacctgtaattttgctactgtatttgac
attcaggatatcttgattattgcatccccaaaggggttgtgaccacaggc
tgagaacactgagccagacactaaagggtttggaaggaggctggtgctta
ttagaccttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29235473_29236529
seq2: B6Ng01-199B06.g_64_1125 (reverse)

seq1  TCTAAGGTCT-ATAAGCA-CAGCCTCC-TCCAA--CCCTTAGTGTCTGGC  45
      |||||||||| ||||||| |||||||| |||||  || ||||||||||||
seq2  TCTAAGGTCTAATAAGCACCAGCCTCCTTCCAAACCCTTTAGTGTCTGGC  50

seq1  TCAGTGGTTCTCAGCCTGTGGGTCAC-ACCCCTTTGGGGATGCA--TATC  92
      ||||| ||||||||||||| |||||| |||||||||||||||||   |||
seq2  TCAGT-GTTCTCAGCCTGT-GGTCACAACCCCTTTGGGGATGCAATAATC  98

seq1  -AGATATCCTGAATGTCAAATAACAGTAGCAAAATTACAGGTATGAAGTA  141
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGATATCCTGAATGTCAAAT-ACAGTAGCAAAATTACAGGTATGAAGTA  147

seq1  GTAAGGAAATAATTTTATGGTTGTGGGTCACCATGATATGAGAAACTGTA  191
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAAAATATTTTATGGTTGTGGGTCACCATGATATGAGAAACTGTA  197

seq1  TTAAAGGGTCACAGCATTCGGGAGATTGAGAACCACTGCTCCAGTCACTC  241
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAA-GGTCACAGCATTCGGGAGATTGAGAACCACTGCTCCAGTCACTC  246

seq1  ACTTCTATTTCCATCCATGTCCTGGGATAAGCTCTTTCAAGGCACTGCTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATTTCCATCCATGTCCTGGGATAAGCTCTTTCAAGGCACTGCTT  296

seq1  GTTCATCTGTTTCCTCCGAGCAGAGACAGTCTCTACCTGGGCTTTGAGAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTGTTTCCTCCGAGCAGAGACAGTCTCTACCTGGGCTTTGAGAG  346

seq1  GCAGCACATTGGCTTTGGAGAAATTGGGGGCATACTCTGGTCCACTTAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACATTGGCTTTGGAGAAATTGGGGGCATACTCTGGTCCACTTAGA  396

seq1  TCTCAATGCCACTGCCACCTTAGTGAGGAAGGCTCTTCTCTATCACGAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGCCACTGCCACCTTAGTGAGGAAGGCTCTTCTCTATCACGAGC  446

seq1  TTGGGAATACTCTCAGTTTGGAATTATTCACTTGTACAGTAGTAGGCTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATACTCTCAGTTTGGAATTATTCACTTGTACAGTAGTAGGCTTT  496

seq1  CTTCACTTCTTAACAACTCAGCACAGCATCATGCTTAGCTTCTGTTCCTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTCTTAACAACTCAGCACAGCATCATGCTTAGCTTCTGTTCCTG  546

seq1  AGCCAAGCACATCGTGAAGCTTTGTAACACACAGGATGTGGATGGCTCGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCACATCGTGAAGCTTTGTAACACACAGGATGTGGATGGCTCGC  596

seq1  CTGAGTTTTCACTTCCTAACTGTCTCTCCATTGCTTTCCTGCCCTCGTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTTCACTTCCTAACTGTCTCTCCATTGCTTTCCTGCCCTCGTTA  646

seq1  AATTAATCTGATTGAAGTGTCCTTCCAAAGAACCTTCAGTGTCTCCCTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCTGATTGAAGTGTCCTTCCAAAGAACCTTCAGTGTCTCCCTGT  696

seq1  TATTTTGGCAGAAAGCACAAAGCTCGTTGGCTGCCTTGGACAGTGCCTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGCAGAAAGCACAAAGCTCGTTGGCTGCCTTGGACAGTGCCTGT  746

seq1  CTCCTCCAGTCTTCTCTGTTCTTCATGCTCCGCTGAACAGCACCTGCCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAGTCTTCTCTGTTCTTCATGCTCCGCTGAACAGCACCTGCCTC  796

seq1  TGTTTTAAAGACTCTTCTACCTGCTTGGTACTTCAAGCCTTCCTTTGATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAGACTCTTCTACCTGCTTGGTACTTCAAGCCTTCCTTTGATT  846

seq1  TCTCATCCCTGACACCCCATGTTCTCTGCATTGCCAGGACCAAAGTCATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCTGACACCCCATGTTCTCTGCATTGCCAGGACCAAAGTCATT  896

seq1  CTCTGAAATTCAAAAGGCCCTCCACCCTTTCTCCTGATGCCGAGGAAGTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATTCAAAAGGCCCTCCACCCTTTCTCCTGATGCCGAGGAAGTT  946

seq1  CTGCCCATCAGAAACAGGCTGACCTGGCTAGATCTCTACTGGAGAGATCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATCAGAAACAGGCTGACCTGGCTAGATCTCTACTGGAGAGATCT  996

seq1  AGACCCTTACCAACCCATGTTCCTTCCATAAGGTCCTCATGGAAGCCTCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTACCAACCCATGTTCCTTCCATAAGGTCCTCATGGAAGCCTCA  1046

seq1  GTAACAATAAGAATTC  1057
      ||||||||||||||||
seq2  GTAACAATAAGAATTC  1062