BAC Information

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BAC

Clone NameB6Ng01-201H20
Chromosome16 (Build37)
Map Location 14,721,345 - 14,861,196
singlet/doubletdoublet
Overlap genenone
Upstream genePla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
Downstream geneEfcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201H20.bB6Ng01-201H20.g
ACCGA022246GA022247
length1,142955
definitionB6Ng01-201H20.b B6Ng01-201H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,860,044 - 14,861,196)(14,721,345 - 14,722,298)
sequence
gaattcttattagtttaaccaccctatagttgatggatgctctatttctg
gcagtaaaacccatttctaatgaagaggagcactttgttctgtgtcaaga
ggctccccacatttttcctatataggcagtgtgattgagtggaggtatat
tttaatgaattttccagctgttaccagattgcatgagttctagagcattc
ttttatctagcagtaaacctaccacttatgcacagcagttgggaagcagc
cagtgattagcagctttgggtctgcagtcaatgcatggtaacacactcac
ccgctaggagaggttgaggacgcctgtgctgttctctgctttcttgtgac
ttattccatatgccttctgccagctcatgaaagcagccaatggggtaacc
caagtttgaggatttgttagctggtgttctattccctgagaaatatgctg
ttcattctacatagaaaagatgagactgtgtgcttgtaccattgcccatg
tttctgcatgcttaaaacttctgctggaccccaaggaaggaatccctgtc
aacatccagaggtgtcagggtgactgatgtttgaatgtatgccaatgggg
aagtaggatgacaaacctaaaattgtgtgttcaaattctttgatcgtgac
gatttatttattagtgtgtagaaataccagttatcatttcgatacagtaa
atttagtgttttcagccatttcttttgctttaactgcattgtaaatttta
ctgcacctctggaatctattggttttgtttaaaaaataacaataaccctc
ttgcttaactgtttctctccctagttctacttgtactttctctcaatagg
ttaacttctttcttctgcctcttcccaccctttctctacagaagatacag
caggagtcttctccttgttggctttatcacctgtatctctgaatggggaa
gacccagctcctcattgacactgaaaacgaggtgttcatgggcagcatta
ccccatgcactttcagaaactcactttttcttattgttacaagcattcac
tatcataggctagcttagcttaggtcacagcctgccattatgatgacatt
gctaataacatagatcactgtaagaagacttaaggttctaca
gaattcaaagtaaaggttaaaatgagtttttaacttatttaactcatacg
tataattgccacctgatgtccatgactactcttgccaacattgtcatctg
agactggacacaaaacacaaaaataatagattgtaagacttcactggacc
tgttcttaatatttaaacaaggggctggttgctctgaacactgaaagata
cttccacaaggacctactggtataaaatggagttaaatatcagaagcaaa
ttcacttacaatttgattatatgctctcacatctatttcatcttcttcct
atgatctcacaaattaacaatgagtgccaagtctgccattttcagaaact
gaagataattttgactgatagatggaaattcatattttacttttctatat
taactacagaagtaaaaaatagaaggcgctgagctgttatattagttact
gagcaacattaaaagctgattaagctccaattccaaagaggtgtgtgcca
gtatataataagtagagaacattcctatagtcactgtattttccctaaaa
cttcagttacttcattcagggagggtaatagagaaaaagaaaaactcagt
acagtatagcaaaatgttggcattgtttcttgttcatagaaacatttttg
gtatccaggaaccacaaatgacatttttaaagtactaagtaaatactgaa
acctaaatgttgcagaccagccggtggcctatatgaactgggtacacctg
ggaggcaggctggggctgaaaaagacttagatggtgagagattaatggag
ccaagacgattccctgttcaaggctcccgagtttattaagagaccgtgat
tataaaggggaaggcccattccccccatccctcccacacacacttgggtg
cctggagcattctgtcaatacttggggctccaggctatctgatgtattgc
agcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_14860044_14861196
seq2: B6Ng01-201H20.b_42_1183 (reverse)

seq1  TGTAGAAACCTTAAGTCTTCTTACAGTGGAATTCTATGTTA-TAGC-ATG  48
      ||||| ||||||||||||||||||||||    ||||||||| |||| |||
seq2  TGTAG-AACCTTAAGTCTTCTTACAGTG---ATCTATGTTATTAGCAATG  46

seq1  TCATTCATAATGGCAGGGCTGTGA-CTAAGGCCTAAAGCTAAGGCTAATG  97
      ||| ||||||||||| |||||||| |||||  || ||||| || |||   
seq2  TCA-TCATAATGGCA-GGCTGTGACCTAAG--CT-AAGCT-AGCCTA--T  88

seq1  GATAGTGAATGC-TGTAACAATAAGGAAAAAGTGGAGTTTCTGAAGGTGC  146
      |||||||||||| ||||||||||| |||||||| ||||||||||| ||||
seq2  GATAGTGAATGCTTGTAACAATAA-GAAAAAGT-GAGTTTCTGAAAGTGC  136

seq1  ATGGGGTAATGCTGCCCATGAACACCTCGTTTTCAGTGTCAATGGAGGAG  196
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGGGGTAATGCTGCCCATGAACACCTCGTTTTCAGTGTCAAT-GAGGAG  185

seq1  CTGGGTCTTCCCCATTCAGAGATACAGGTGATAAAGCCAACAAGGAGAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTTCCCCATTCAGAGATACAGGTGATAAAGCCAACAAGGAGAAG  235

seq1  ACTCCTGCTGTATCTTCTGTAGAGAAAGGGTGGGAAGAGGCAGAAGAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTGTATCTTCTGTAGAGAAAGGGTGGGAAGAGGCAGAAGAAAG  285

seq1  AAGTTAACCTATTGAGAGAAAGTACAAGTAGAACTAGGGAGAGAAACAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACCTATTGAGAGAAAGTACAAGTAGAACTAGGGAGAGAAACAGT  335

seq1  TAAGCAAGAGGGTTATTGTTATTTTTTAAACAAAACCAATAGATTCCAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGAGGGTTATTGTTATTTTTTAAACAAAACCAATAGATTCCAGA  385

seq1  GGTGCAGTAAAATTTACAATGCAGTTAAAGCAAAAGAAATGGCTGAAAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGTAAAATTTACAATGCAGTTAAAGCAAAAGAAATGGCTGAAAAC  435

seq1  ACTAAATTTACTGTATCGAAATGATAACTGGTATTTCTACACACTAATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTTACTGTATCGAAATGATAACTGGTATTTCTACACACTAATAA  485

seq1  ATAAATCGTCACGATCAAAGAATTTGAACACACAATTTTAGGTTTGTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCGTCACGATCAAAGAATTTGAACACACAATTTTAGGTTTGTCAT  535

seq1  CCTACTTCCCCATTGGCATACATTCAAACATCAGTCACCCTGACACCTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCCCCATTGGCATACATTCAAACATCAGTCACCCTGACACCTCT  585

seq1  GGATGTTGACAGGGATTCCTTCCTTGGGGTCCAGCAGAAGTTTTAAGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGACAGGGATTCCTTCCTTGGGGTCCAGCAGAAGTTTTAAGCAT  635

seq1  GCAGAAACATGGGCAATGGTACAAGCACACAGTCTCATCTTTTCTATGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACATGGGCAATGGTACAAGCACACAGTCTCATCTTTTCTATGTA  685

seq1  GAATGAACAGCATATTTCTCAGGGAATAGAACACCAGCTAACAAATCCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACAGCATATTTCTCAGGGAATAGAACACCAGCTAACAAATCCTC  735

seq1  AAACTTGGGTTACCCCATTGGCTGCTTTCATGAGCTGGCAGAAGGCATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGGTTACCCCATTGGCTGCTTTCATGAGCTGGCAGAAGGCATAT  785

seq1  GGAATAAGTCACAAGAAAGCAGAGAACAGCACAGGCGTCCTCAACCTCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGTCACAAGAAAGCAGAGAACAGCACAGGCGTCCTCAACCTCTC  835

seq1  CTAGCGGGTGAGTGTGTTACCATGCATTGACTGCAGACCCAAAGCTGCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGGGTGAGTGTGTTACCATGCATTGACTGCAGACCCAAAGCTGCTA  885

seq1  ATCACTGGCTGCTTCCCAACTGCTGTGCATAAGTGGTAGGTTTACTGCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGCTGCTTCCCAACTGCTGTGCATAAGTGGTAGGTTTACTGCTA  935

seq1  GATAAAAGAATGCTCTAGAACTCATGCAATCTGGTAACAGCTGGAAAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAATGCTCTAGAACTCATGCAATCTGGTAACAGCTGGAAAATT  985

seq1  CATTAAAATATACCTCCACTCAATCACACTGCCTATATAGGAAAAATGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATATACCTCCACTCAATCACACTGCCTATATAGGAAAAATGTG  1035

seq1  GGGAGCCTCTTGACACAGAACAAAGTGCTCCTCTTCATTAGAAATGGGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTCTTGACACAGAACAAAGTGCTCCTCTTCATTAGAAATGGGTT  1085

seq1  TTACTGCCAGAAATAGAGCATCCATCAACTATAGGGTGGTTAAACTAATA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCAGAAATAGAGCATCCATCAACTATAGGGTGGTTAAACTAATA  1135

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1142

seq1: chr16_14721345_14722298
seq2: B6Ng01-201H20.g_65_1019

seq1  GAATTCAAAGTAAAGGTTAAAATGAGTTTTTAACTTATTTAACTCATACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAAGGTTAAAATGAGTTTTTAACTTATTTAACTCATACG  50

seq1  TATAATTGCCACCTGATGTCCATGACTACTCTTGCCAACATTGTCATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGCCACCTGATGTCCATGACTACTCTTGCCAACATTGTCATCTG  100

seq1  AGACTGGACACAAAACACAAAAATAATAGATTGTAAGACTTCACTGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGACACAAAACACAAAAATAATAGATTGTAAGACTTCACTGGACC  150

seq1  TGTTCTTAATATTTAAACAAGGGGCTGGTTGCTCTGAACACTGAAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAATATTTAAACAAGGGGCTGGTTGCTCTGAACACTGAAAGATA  200

seq1  CTTCCACAAGGACCTACTGGTATAAAATGGAGTTAAATATCAGAAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAAGGACCTACTGGTATAAAATGGAGTTAAATATCAGAAGCAAA  250

seq1  TTCACTTACAATTTGATTATATGCTCTCACATCTATTTCATCTTCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTACAATTTGATTATATGCTCTCACATCTATTTCATCTTCTTCCT  300

seq1  ATGATCTCACAAATTAACAATGAGTGCCAAGTCTGCCATTTTCAGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCACAAATTAACAATGAGTGCCAAGTCTGCCATTTTCAGAAACT  350

seq1  GAAGATAATTTTGACTGATAGATGGAAATTCATATTTTACTTTTCTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAATTTTGACTGATAGATGGAAATTCATATTTTACTTTTCTATAT  400

seq1  TAACTACAGAAGTAAAAAATAGAAGGCGCTGAGCTGTTATATTAGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAGAAGTAAAAAATAGAAGGCGCTGAGCTGTTATATTAGTTACT  450

seq1  GAGCAACATTAAAAGCTGATTAAGCTCCAATTCCAAAGAGGTGTGTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACATTAAAAGCTGATTAAGCTCCAATTCCAAAGAGGTGTGTGCCA  500

seq1  GTATATAATAAGTAGAGAACATTCCTATAGTCACTGTATTTTCCCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATAAGTAGAGAACATTCCTATAGTCACTGTATTTTCCCTAAAA  550

seq1  CTTCAGTTACTTCATTCAGGGAGGGTAATAGAGAAAAAGAAAAACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTACTTCATTCAGGGAGGGTAATAGAGAAAAAGAAAAACTCAGT  600

seq1  ACAGTATAGCAAAATGTTGGCATTGTTTCTTGTTCATAGAAACATTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAGCAAAATGTTGGCATTGTTTCTTGTTCATAGAAACATTTTTG  650

seq1  GTATCCAGGAACCACAAATGACATTTTTAAAGTACTAAGTAAATACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGGAACCACAAATGACATTTTTAAAGTACTAAGTAAATACTGAA  700

seq1  ACCTAAATGTTGCAGACCAGCCGGTGGCCTATATGAACTGGGTACACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATGTTGCAGACCAGCCGGTGGCCTATATGAACTGGGTACACCTG  750

seq1  GGAGGCAGGCTGGGGCTGAAAAAGACTTAGATGGTGAGAGATTAATGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGGCTGGGGCTGAAAAAGACTTAGATGGTGAGAGATTAATGGAG  800

seq1  CCAAGACGATTCCCTGTTCAAGGCTCCCGAGTTTATTAAGAGACCGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACGATTCCCTGTTCAAGGCTCCCGAGTTTATTAAGAGACCGTGAT  850

seq1  TATAAGGGGGAAGGCCCATTCCCCCCACCCCCCCCACACACACTT-GGTG  899
      ||||| ||||||||||||||||||||| ||| ||||||||||||| ||||
seq2  TATAAAGGGGAAGGCCCATTCCCCCCATCCCTCCCACACACACTTGGGTG  900

seq1  CCTGGAGCCATTCTGTCAATACTT-GGTCTCCAGGCTTCTTGATGTATTG  948
      ||||||| |||||||||||||||| || |||||||||   ||||||||||
seq2  CCTGGAG-CATTCTGTCAATACTTGGGGCTCCAGGCTATCTGATGTATTG  949

seq1  CTGCCA  954
      | ||||
seq2  CAGCCA  955