BAC Information

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BAC

Clone NameB6Ng01-201P11
Chromosome16 (Build37)
Map Location 34,447,386 - 34,631,751
singlet/doubletdoublet
Overlap geneKalrn
Upstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201P11.bB6Ng01-201P11.g
ACCGA022591GA022592
length1,213852
definitionB6Ng01-201P11.b B6Ng01-201P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,447,386 - 34,448,613)(34,630,902 - 34,631,751)
sequence
gaattccacggctcacacgttgcttgctctagctcaggattgaggaggga
gacccattcttacctataaaccctgatctcagactgagtacctccctgag
ccaccaagccaacccagctccatcttcctcctgtggttccagaaagcgta
catgtgctccatgaaacacagtggctccagatctctgctcgtagaccctc
cacagctgctcactgcttcttctatctaaatcacagtactgacttctcac
aaagggggtggaaagaatttgccaagtgactcaaaacactggttcctttg
catatgcatgcattgttttattcctagaacatcttcatggtatggtatgg
tatgtccagcttacataggaataagtggagattcacagaaaactcaaggt
gccacagttaataagcagggcttagttaatggtccaggtaactcagtctc
tatgtgagagccaacactgagtgttacattttcctagaatatcgtctgaa
tatagctgccacatttgcaactcaagggcagagtttgttctatgtcagat
gtccctgtagcttccagcactgtgccacatacccggaagtaggtttaaca
atgatacaactttagtcattcccagagtcctctcccatcagagtttcact
ggagcctgacccaaaccacaaatgtgtgacagcagttgccatcttctcca
aggtcatacctttcctacactcttcaacatgctggcttttcatgacagaa
actaaaaccagagcaaaggacatgagagggggctagtgagatggttttgc
agttaagagcacctactactctttcagaaaacctgagcttggtccccacc
actcatgaagagctgctcataactgcctataattacagctacagggaatc
caatccctttggggtccatgggccacatcctgacatacacacacttaaaa
ataaaagaaaatctacagtatacaacaatgaaaaagaatgtgacagaagc
atggtgaaatcggccaggccaccaggcagagagggggaggccagagcttc
ttttctatgagcctgggaagatgaggggaccaccaagcttctcaagaagc
atctccgttaaggcttgattctgtgtcagtcctctcacaagtctcactgc
caatctgagtcgctactctaagctacgaaccagagccagatattctcatc
cttctcccctaca
gaattctttctgttatctttttttttttttttacggctttggaattcagg
tacacatgcttaaagtaatcttgttctccatttggtatcatccatctctg
gtctctgtgtttgaaaatactcaaaaatctatcatttttttccttcatct
atcattccaaatcctactgcttcctcccccaaacatacactctaatgcct
ttaatagagtcttaccaatacacctgacagttatttagatgtaagagcat
ccttacaaaaatgtacacagctggtgtatgtgcatttttgatagatggaa
ttgtgttgtaggtctcctcttgactttgttttccccttcaagtctgtttt
agagatttttttttcaggcatctgcatgaaaatcctagttcattttcttg
tttacatgccctgggttcacattgctagagatggatggaagcttaggttg
ctcccaacagggtagcaatgaagctctttagtggaatttcctagtgtttc
ctagaatgatgggttttttttttttttttttttttttgctgttgttgttt
tgttttgttttgttttttggtttttttgattttttgtttttgtttttaag
atactgtggtagtttgcatatgcttgacccagggctagggcacttattag
gaggtgtggccttgttggaataggtatggccttgttgggaagaaatgtgt
cactatgggggtgggcaatgtgagaccctcctcttaaccatatgtggagc
cgtctttctcctagtgggtctttaaaatgaagattagaacttccatctcc
ttctgcccatgcctgtcttgtacctgccttattccacttttgatggtcct
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34447386_34448613
seq2: B6Ng01-201P11.b_42_1254

seq1  GAATTCCACGGCTCACACGTTGCTTGCTCTAGCTCAGGATTGAGGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCTCACACGTTGCTTGCTCTAGCTCAGGATTGAGGAGGGA  50

seq1  GACCCATTCTTACCTATAAACCCTGATCTCAGACTGAGTACCTCCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATTCTTACCTATAAACCCTGATCTCAGACTGAGTACCTCCCTGAG  100

seq1  CCACCAAGCCAACCCAGCTCCATCTTCCTCCTGTGGTTCCAGAAAGCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGCCAACCCAGCTCCATCTTCCTCCTGTGGTTCCAGAAAGCGTA  150

seq1  CATGTGCTCCATGAAACACAGTGGCTCCAGATCTCTGCTCGTAGACCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTCCATGAAACACAGTGGCTCCAGATCTCTGCTCGTAGACCCTC  200

seq1  CACAGCTGCTCACTGCTTCTTCTATCTAAATCACAGTACTGACTTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCTCACTGCTTCTTCTATCTAAATCACAGTACTGACTTCTCAC  250

seq1  AAAGGGGGTGGAAAGAATTTGCCAAGTGACTCAAAACACTGGTTCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGTGGAAAGAATTTGCCAAGTGACTCAAAACACTGGTTCCTTTG  300

seq1  CATATGCATGCATTGTTTTATTCCTAGAACATCTTCATGGTATGGTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCATGCATTGTTTTATTCCTAGAACATCTTCATGGTATGGTATGG  350

seq1  TATGTCCAGCTTACATAGGAATAAGTGGAGATTCACAGAAAACTCAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGCTTACATAGGAATAAGTGGAGATTCACAGAAAACTCAAGGT  400

seq1  GCCACAGTTAATAAGCAGGGCTTAGTTAATGGTCCAGGTAACTCAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTTAATAAGCAGGGCTTAGTTAATGGTCCAGGTAACTCAGTCTC  450

seq1  TATGTGAGAGCCAACACTGAGTGTTACATTTTCCTAGAATATCGTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGAGCCAACACTGAGTGTTACATTTTCCTAGAATATCGTCTGAA  500

seq1  TATAGCTGCCACATTTGCAACTCAAGGGCAGAGTTTGTTCTATGTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGCCACATTTGCAACTCAAGGGCAGAGTTTGTTCTATGTCAGAT  550

seq1  GTCCCTGTAGCTTCCAGCACTGTGCCACATACCCGGAAGTAGGTTTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTAGCTTCCAGCACTGTGCCACATACCCGGAAGTAGGTTTAACA  600

seq1  ATGATACAACTTTAGTCATTCCCAGAGTCCTCTCCCATCAGAGTTTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACAACTTTAGTCATTCCCAGAGTCCTCTCCCATCAGAGTTTCACT  650

seq1  GGAGCCTGACCCAAACCACAAATGTGTGACAGCAGTTGCCATCTTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGACCCAAACCACAAATGTGTGACAGCAGTTGCCATCTTCTCCA  700

seq1  AGGTCATACCTTTCCTACACTCTTCAACATGCTGGCTTTTCATGACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATACCTTTCCTACACTCTTCAACATGCTGGCTTTTCATGACAGAA  750

seq1  ACTAAAACCAGAGCAAAGGACATGAGAGGGGGCTAGTGAGATGGTTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACCAGAGCAAAGGACATGAGAGGGGGCTAGTGAGATGGTTTTGC  800

seq1  AGTTAAGAGCACCTACTACTCTTTCAGAAAACCTGAGCTTGGTCCCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAGCACCTACTACTCTTTCAGAAAACCTGAGCTTGGTCCCCACC  850

seq1  ACTCATGAAGAGCTGCTCATAACTGCCTATAATTACAGCTACAGGGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAAGAGCTGCTCATAACTGCCTATAATTACAGCTACAGGGAATC  900

seq1  CAATCCCTTTGGGGTCCATGGG-CACATCCTGACATACACACACTTAAAA  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAATCCCTTTGGGGTCCATGGGCCACATCCTGACATACACACACTTAAAA  950

seq1  ATAAAGAAAAATCTACAGTATAACAACAATGAAAA--GATGTGACAAGAA  997
      |||||  |||||||||||||| |||||||||||||   ||||||| ||||
seq2  ATAAAAGAAAATCTACAGTAT-ACAACAATGAAAAAGAATGTGAC-AGAA  998

seq1  GCATGGTGAAATCGGCCAGGCCA-CAGGCAGAGAGGGG--AGCCAGAGC-  1043
      ||||||||||||||||||||||| ||||||||||||||   |||||||| 
seq2  GCATGGTGAAATCGGCCAGGCCACCAGGCAGAGAGGGGGAGGCCAGAGCT  1048

seq1  TCTTTTCTATGAGCTGGGAAAGATGAGGGGACCACCAAGCTTCTCCCAAG  1093
      ||||||||||||||  || |||||||||||||||||||||||||  ||||
seq2  TCTTTTCTATGAGCCTGGGAAGATGAGGGGACCACCAAGCTTCT--CAAG  1096

seq1  AAGCATCCTCCGGTTTTAAAGC-TGATTCTGTGTCCAGTCCTCTCCACAA  1142
      |||||| |||||   |||| || ||||||||||| ||||||||| |||||
seq2  AAGCAT-CTCCG---TTAAGGCTTGATTCTGTGT-CAGTCCTCT-CACAA  1140

seq1  GTCTCACTGCCATTCTGGAGGTTCGTCTAACATCT-AGCTACCAGAACCA  1191
      |||||||||||| ||| |||  ||| |||   ||| ||||||  ||||||
seq2  GTCTCACTGCCAATCT-GAG--TCG-CTA--CTCTAAGCTAC--GAACCA  1182

seq1  GAAGCCAG-TATTCTCATCTTCCCTCAACTCCCCTACA  1228
      | |||||| ||||||||||      |  ||||||||||
seq2  G-AGCCAGATATTCTCATC------CTTCTCCCCTACA  1213

seq1: chr16_34630902_34631751
seq2: B6Ng01-201P11.g_70_921 (reverse)

seq1  CCAGGACCATCAAAGTGGGAATATGGCAGTGTCCAGGCGGGCATGGTGCA  50
      ||||||||||||||   |||||| |||||   | || | ||||||| |||
seq2  CCAGGACCATCAAAAGTGGAATAAGGCAGGTACAAGACAGGCATGG-GCA  49

seq1  GAAGGAGATGGAAGTTCTACATCTTCATTTTGAAGA-CCACTAGGAG-AA  98
      ||||||||||||||||||| ||||||||||| |||| |||||||||| ||
seq2  GAAGGAGATGGAAGTTCTA-ATCTTCATTTTAAAGACCCACTAGGAGAAA  98

seq1  GACTGGCTCC-CATATGGTTAAGAGGAGGGTCTCACATTGCCCACCCCCA  147
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAC-GGCTCCACATATGGTTAAGAGGAGGGTCTCACATTGCCCACCCCCA  147

seq1  TAGTGACACATTTCTT-CCAACAAGGCCATACCTATTCCAACAAGGCCAC  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGTGACACATTTCTTCCCAACAAGGCCATACCTATTCCAACAAGGCCAC  197

seq1  ACCTCCTAAT-AGTGCCCTAGCCCTGGGTCAAGCATATGCAAACTACCAC  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTAATAAGTGCCCTAGCCCTGGGTCAAGCATATGCAAACTACCAC  247

seq1  AGTATCTTAAAAACAAAAACAAAAAATCAAAAAAACCAAAAAACAAAACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTAAAAACAAAAACAAAAAATCAAAAAAACCAAAAAACAAAACA  297

seq1  AAACAAAACAACAACAGCAAAAAAAAAAAAAAAAAAAAAAAACCCATCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAACAACAGCAAAAAAAAAAAAAAAAAAAAAAAACCCATCAT  347

seq1  TCTAGGAAACACTAGGAAATTCCACTAAAGAGCTTCATTGCTACCCTGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAACACTAGGAAATTCCACTAAAGAGCTTCATTGCTACCCTGTT  397

seq1  GGGAGCAACCTAAGCTTCCATCCATCTCTAGCAATGTGAACCCAGGGCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAACCTAAGCTTCCATCCATCTCTAGCAATGTGAACCCAGGGCAT  447

seq1  GTAAACAAGAAAATGAACTAGGATTTTCATGCAGATGCCTGAAAAAAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGAAAATGAACTAGGATTTTCATGCAGATGCCTGAAAAAAAAA  497

seq1  TCTCTAAAACAGACTTGAAGGGGAAAACAAAGTCAAGAGGAGACCTACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAACAGACTTGAAGGGGAAAACAAAGTCAAGAGGAGACCTACAA  547

seq1  CACAATTCCATCTATCAAAAATGCACATACACCAGCTGTGTACATTTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCCATCTATCAAAAATGCACATACACCAGCTGTGTACATTTTTG  597

seq1  TAAGGATGCTCTTACATCTAAATAACTGTCAGGTGTATTGGTAAGACTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGCTCTTACATCTAAATAACTGTCAGGTGTATTGGTAAGACTCT  647

seq1  ATTAAAGGCATTAGAGTGTATGTTTGGGGGAGGAAGCAGTAGGATTTGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCATTAGAGTGTATGTTTGGGGGAGGAAGCAGTAGGATTTGGA  697

seq1  ATGATAGATGAAGGAAAAAAATGATAGATTTTTGAGTATTTTCAAACACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGATGAAGGAAAAAAATGATAGATTTTTGAGTATTTTCAAACACA  747

seq1  GAGACCAGAGATGGATGATACCAAATGGAGAACAAGATTACTTTAAGCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGAGATGGATGATACCAAATGGAGAACAAGATTACTTTAAGCAT  797

seq1  GTGTACCTGAATTCCAAAGCCGTAAAAAAAAAAAAAAAGATAACAGAAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTGAATTCCAAAGCCGTAAAAAAAAAAAAAAAGATAACAGAAAG  847

seq1  AATTC  850
      |||||
seq2  AATTC  852