BAC Information

Click to search

BAC

Clone NameB6Ng01-203G15
Chromosome16 (Build37)
Map Location 41,865,106 - 42,005,975
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203G15.bB6Ng01-203G15.g
ACCGA023637GA023638
length8361,108
definitionB6Ng01-203G15.b B6Ng01-203G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,865,106 - 41,865,845)(42,004,853 - 42,005,975)
sequence
gaattcattggagctttgatcatgtttgtaaaacaaattaaaaattcttg
ataacccatatttaaaaaccaaatcatccaatattttatttacaagacat
aagcctagattcggcaggtttgcagctaatctaacttatttcccagccat
atgtcccttgtcatttgctgttctcttggccacatgcttgtggtccatct
cctctcaggacagccttcttcattcttcatgtcctttcttctatctctat
ctgcaagcctcatccaagtcactgaaaatgcacctacctctctctactgc
ccaatcatgtagactttagcctttattaaccaattaacttggtgagcaag
gttacatagtctcttatagtgtattggaaggtctccttaacagaggcaaa
aagatcttgggggccaatctttagcatttaaatatatagtggtaccagac
caaccctacaatgttgattgagagggtcttgttttcttctgtctatcatc
ccctctcaatcttatattctttctacctactcttctttgaggttaactgg
gccctgaaggaagagatttgatagagacattccatctagggctgacacat
ataatatgacaacttaacagaatataggtaaagctagaaatatgaattaa
atgggattaagattatacctcattacaatcagaatggttggaaacaaaaa
acaagatagtgatcatactggaaaaggggaccttatatgttgtttggaat
gttaattagtgcactcaccatggaaattaaaaagtttggaaggaaggaag
gaaggaaggaaaggaaggaaggaaggaagggaggga

gaattcatgtgtcatagaagcaaaaggcatcaggaaggagtttgggggaa
gcagaggacaggagcagaggcagaaggagaacaaagtgaagtactgtatg
tgcacagagtccccgaatgaaagctattattatgaatgttaattttaaca
tgttaataaattaatattgttcaataaagagtaaggaaatcatatgccag
cagtggtttagaaagggggcttcttcaaaaagtcatctttttgtgtgact
gcattagtgaaggcatattttctgaaatagtcaaggctatataacaatat
atgtcataaagtctatgcatccagcagataaagatgaattaaatagcttt
aattatatatatttcattcactcagaatactaatcagaaagctctcccag
tgtgtgtgtgtgtgtatgagggaggaatctatggattatgattataatta
atgacagcttttaaattatctggacaaacttcaaattttcatttcataat
taaaattatattctaaagaagattcaggtaattaccaaaaatcatattaa
caacattcagcactcctaaagaaatttggggtaaagaggaaaaaaaaatg
acaaaattaagtcagactacttggagaatacacaaaagtaaatcacctga
ctctgaaaagacaatgccagaaacaaaaactttagaactgccactcaaca
gagagtgcaggagcccagagctagagatgccactcaacggagagttcagg
gagcccagagctagagatgccactcaaagagagtgcaggagcccagagct
agagatgccactcaaaggagagcacaggaggccagagatagagctactag
gctcatagagcaatccaccaagaacatgggattttttgcatgtaattgta
tgtaaatgaatgaaccaaggaagcaacattttatagtgtttaatgtgtta
ttattaagtttttccctgaaattatatcttcgaaattagccaggggtcag
ttgttactgaaagacagaagcactgtatattggatgggccagaagagctg
tcagtgtttatagcccacacagatgtgccataccatacccaataattaaa
ttaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_41865106_41865845
seq2: B6Ng01-203G15.b_140_880

seq1  GACATAAGCCTAGATTCGGCAGGTTTGCAGCTAATCTAACTTATTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAGCCTAGATTCGGCAGGTTTGCAGCTAATCTAACTTATTTCCCA  50

seq1  GCCATATGTCCCTTGTCATTTGCTGTTCTCTTGGCCACATGCTTGTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGTCCCTTGTCATTTGCTGTTCTCTTGGCCACATGCTTGTGGTC  100

seq1  CATCTCCTCTCAGGACAGCCTTCTTCATTCTTCATGTCCTTTCTTCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTCTCAGGACAGCCTTCTTCATTCTTCATGTCCTTTCTTCTATC  150

seq1  TCTATCTGCAAGCCTCATCCAAGTCACTGAAAATGCACCTACCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGCAAGCCTCATCCAAGTCACTGAAAATGCACCTACCTCTCTCT  200

seq1  ACTGCCCAATCATGTAGACTTTAGCCTTTATTAACCAATTAACTTGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAATCATGTAGACTTTAGCCTTTATTAACCAATTAACTTGGTGA  250

seq1  GCAAGGTTACATAGTCTCTTATAGTGTATTGGAAGGTCTCCTTAACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTACATAGTCTCTTATAGTGTATTGGAAGGTCTCCTTAACAGAG  300

seq1  GCAAAAAGATCTTGGGGGCCAATCTTTAGCATTTAAATATATAGTGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGATCTTGGGGGCCAATCTTTAGCATTTAAATATATAGTGGTAC  350

seq1  CAGACCAACCCTACAATGTTGATTGAGAGGGTCTTGTTTTCTTCTGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAACCCTACAATGTTGATTGAGAGGGTCTTGTTTTCTTCTGTCTA  400

seq1  TCATCCCCTCTCAATCTTATATTCTTTCTACCTACTCTTCTTTGAGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTCTCAATCTTATATTCTTTCTACCTACTCTTCTTTGAGGTTA  450

seq1  ACTGGGCCCTGAAGGAAGAGATTTGATAGAGACATTCCATCTAGGGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCCCTGAAGGAAGAGATTTGATAGAGACATTCCATCTAGGGCTGA  500

seq1  CACATATAATATGACAACTTAACAGAATATAGGTAAAGCTAGAAATATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAATATGACAACTTAACAGAATATAGGTAAAGCTAGAAATATGA  550

seq1  ATTAAATGGGATTAAGATTATACCTCATTACAATCAGAATGGTTGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGGATTAAGATTATACCTCATTACAATCAGAATGGTTGGAAAC  600

seq1  AAAAAACAAGATAGTGATCATACTGGAAAAGGGGACCTTATATGTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAGATAGTGATCATACTGGAAAAGGGGACCTTATATGTTGTTT  650

seq1  GGAATGTTAATTAGTGCACTCACCATGGAAATTAAAAAGTTTGGAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTAATTAGTGCACTCACCATGGAAATTAAAAAGTTTGGAAGGAA  700

seq1  GGAAGGAAGGAAGG-AAGGAAGGAAGGAAGGAAGGGAGGGA  740
      |||||||||||||| ||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAAGGAAGGAAGGAAGGAAGGGAGGGA  741


seq1: chr16_42004853_42005975
seq2: B6Ng01-203G15.g_63_1170 (reverse)

seq1  TTGTTTTATTTTTAATTA-TGTGTAT-GTATGTGCACATCTGTGTGGGCT  48
      |||||| |  |||||||| || |||| ||||| |||||||||||||||||
seq2  TTGTTTAA--TTTAATTATTGGGTATGGTATG-GCACATCTGTGTGGGCT  47

seq1  ATAAACAACTGAACCAGCTCTTCTGCCCAATCCAAATATTACAAGTGCTT  98
      |||||| |||||  ||||||||||| || |||| |||| ||| |||||||
seq2  ATAAAC-ACTGA--CAGCTCTTCTGGCCCATCC-AATA-TAC-AGTGCTT  91

seq1  CTGTTCTTTCAAGTAAACAACTTGACCCCTGGCTTAATTTCGAAGATATA  148
      ||| |||||| ||| |||||| ||||||||||| ||||||||||||||||
seq2  CTG-TCTTTC-AGT-AACAAC-TGACCCCTGGC-TAATTTCGAAGATATA  136

seq1  ATTTCAGGAAAAAACTTAATAATAACACATTAAACACTAATAAAAATGTT  198
      |||||||| ||||||||||||||||||||||||||||||   ||||||||
seq2  ATTTCAGGGAAAAACTTAATAATAACACATTAAACACTA--TAAAATGTT  184

seq1  GCTTCCTTGGTTCATTCATTTACATACAATTTACATGCAAAAAATCCCAT  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTCCTTGGTTCATTCATTTACATACAA-TTACATGCAAAAAATCCCAT  233

seq1  GTTCTTGGTGGATTGCTCTATGAGCCTAGTAGCTCTATCTCTGGCCTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGTGGATTGCTCTATGAGCCTAGTAGCTCTATCTCTGGCCTCCT  283

seq1  GTGCTCTCCTTTGAGTGGCATCTCTAGCTCTGGGCTCCTGCACTCTCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCCTTTGAGTGGCATCTCTAGCTCTGGGCTCCTGCACTCTCTTT  333

seq1  GAGTGGCATCTCTAGCTCTGGGCTCCCTGAACTCTCCGTTGAGTGGCATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCATCTCTAGCTCTGGGCTCCCTGAACTCTCCGTTGAGTGGCATC  383

seq1  TCTAGCTCTGGGCTCCTGCACTCTCTGTTGAGTGGCAGTTCTAAAGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCTGGGCTCCTGCACTCTCTGTTGAGTGGCAGTTCTAAAGTTTT  433

seq1  TGTTTCTGGCATTGTCTTTTCAGAGTCAGGTGATTTACTTTTGTGTATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGCATTGTCTTTTCAGAGTCAGGTGATTTACTTTTGTGTATTC  483

seq1  TCCAAGTAGTCTGACTTAATTTTGTCATTTTTTTTTCCTCTTTACCCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAGTCTGACTTAATTTTGTCATTTTTTTTTCCTCTTTACCCCAA  533

seq1  ATTTCTTTAGGAGTGCTGAATGTTGTTAATATGATTTTTGGTAATTACCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGGAGTGCTGAATGTTGTTAATATGATTTTTGGTAATTACCT  583

seq1  GAATCTTCTTTAGAATATAATTTTAATTATGAAATGAAAATTTGAAGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCTTTAGAATATAATTTTAATTATGAAATGAAAATTTGAAGTTT  633

seq1  GTCCAGATAATTTAAAAGCTGTCATTAATTATAATCATAATCCATAGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATAATTTAAAAGCTGTCATTAATTATAATCATAATCCATAGATT  683

seq1  CCTCCCTCATACACACACACACACACTGGGAGAGCTTTCTGATTAGTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCATACACACACACACACACTGGGAGAGCTTTCTGATTAGTATT  733

seq1  CTGAGTGAATGAAATATATATAATTAAAGCTATTTAATTCATCTTTATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAATGAAATATATATAATTAAAGCTATTTAATTCATCTTTATCT  783

seq1  GCTGGATGCATAGACTTTATGACATATATTGTTATATAGCCTTGACTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGCATAGACTTTATGACATATATTGTTATATAGCCTTGACTATT  833

seq1  TCAGAAAATATGCCTTCACTAATGCAGTCACACAAAAAGATGACTTTTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATATGCCTTCACTAATGCAGTCACACAAAAAGATGACTTTTTG  883

seq1  AAGAAGCCCCCTTTCTAAACCACTGCTGGCATATGATTTCCTTACTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCCCCTTTCTAAACCACTGCTGGCATATGATTTCCTTACTCTTT  933

seq1  ATTGAACAATATTAATTTATTAACATGTTAAAATTAACATTCATAATAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAATATTAATTTATTAACATGTTAAAATTAACATTCATAATAAT  983

seq1  AGCTTTCATTCGGGGACTCTGTGCACATACAGTACTTCACTTTGTTCTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCATTCGGGGACTCTGTGCACATACAGTACTTCACTTTGTTCTCC  1033

seq1  TTCTGCCTCTGCTCCTGTCCTCTGCTTCCCCCAAACTCCTTCCTGATGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCTGCTCCTGTCCTCTGCTTCCCCCAAACTCCTTCCTGATGCC  1083

seq1  TTTTGCTTCTATGACACATGAATTC  1123
      |||||||||||||||||||||||||
seq2  TTTTGCTTCTATGACACATGAATTC  1108


| Home | SequenceCutter | Blast | Download |