BAC Information

Click to search

BAC

Clone NameB6Ng01-204I05
Chromosome16 (Build37)
Map Location 68,213,066 - 68,394,770
singlet/doubletdoublet
Overlap genenone
Upstream geneCadm2, 9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204I05.bB6Ng01-204I05.g
ACCGA024442GA024443
length1,1271,107
definitionB6Ng01-204I05.b B6Ng01-204I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,393,656 - 68,394,770)(68,213,066 - 68,214,173)
sequence
gaattccatatattttaacttgaatattaattgtatttaactatattttt
aacgggctcatattatttttaaaaatgcaaagtctatgtaaatagttgtc
atcctgtatgacttaggaaacaaaattgcaacattcatgatgtccttgtt
ttttaatagctgaatattattccattgtgtaaaatgcaccacacattgca
atgaatcaaaggagggcaactctgtttgtttatttctcgatatctctcaa
tattcttatcaatattttgccatgaaatgttatctatagttatggtatta
ttatctcactttgtcctgttattgatgccaaggcaaaaaaaaatgaccca
ttgatcctggtattatattagttctacagtttttggtttactaacttcat
acaagttttgtgagatatggagatgaagattattatcatcttagtgccta
tgacattaaaaaactaatgttaattaaattacagataatggacataatat
attattaaacgtaagactaaagaaaggaaatgatccagcatgttcctaac
tgagaaaacactgtctagataagagtagtaactcatgtggtcttgttcat
tttacatcctttctaggaaccaaaattcaataatagaatagacacaaatt
aagaactgtctttctcaaagggaatatgatataattttattcaggatcta
tcaacaagttaatgggaaaaaataaatagatagtgttggggagagagctc
cgcagataaaagcagttgatcggtaaagaggaataggagttcaaatacca
agcacccacataaaaagttatatatatctgagggtgcctgtaatgtcatc
aatttattgctgtcattcttatgtgctgaaatgtcagagtcccaatttcc
caagttgaaatgataatggagaaatctagtggtttgatgaaaagcattgc
ctctaagcatttaagatagaaactgataatggaaaaattagatattcttt
ctagtgctttatatatataccagattgttctgatatcaaagaaatttagc
ctttaggaacattgtaacgataaacacacctctatattttgaaagaatat
tggaatggctcctgctgcagataataa

gaattctctggaagacagggttagggaggaatgggactaggaacatccag
gggtctaaccatgaaggggataaaggctggactgtaaaaaaggatttaag
attaaaaaaaattataaaaacaagaagtaagagaaacaattacagaaatc
attttgataaaggagagtgtaattttaaaactctacacatgactggcacc
tggaggtaccttttgggttaaataacttagcattttatttcacatttata
tgactagcttaaatgtacatgtgtataggtatgtatatgctgattgggtt
ttaagtttccataacaacatagagcaggaaataattgtagaagtgtgggc
ctgtgtaccacagactttccacagagatttctgacccagcctggttgcta
gagttctaacaaagggaagcaaatgtgggcagggaggggaagtagcttcc
actgcttctgctgctgcagttggctccacctccttatccgcagttccttc
caggttactcggttatgctgcatgctgccctgcactgagtaggtcaggct
gggcccacgaaagatctacttcaggagagcagacctcttcccaagtgtta
cagctcagcccactggccctcatagaagaacctataattatagatattaa
attttttagggcattaccaatccaacaacagagaaatttaaacaacacat
aaacaacacagtttccaaatatagagagactattcaaacaattacaaaac
ataagcacgatatttacatttctgtattaaaattccgggtttctttaaag
tcagtgatataaaacaaagtctaggaaataaagattttaaggatttcaga
agcaaagaatgtcaccattgcgaaagaaatggctgccaaagacactagag
aagctgcaagcagacttatgttgacagcatcttaagtggtagagtgatac
gggtttttgactgcagaaatagctcattaacgtcaacatttttgttcaga
tcactgcttactttacttgtatttacgtataaaactgttctgttgagtga
tgcattattttcttaaagttattacattgtataagatttattagaaaggt
gtcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_68393656_68394770
seq2: B6Ng01-204I05.b_43_1169 (reverse)

seq1  TTATTATATTCTACAGCA-GAG-CATTCCATTA-TCTTTCAAAATATAGA  47
      ||||||   ||| ||||| ||| ||||||| || ||||||||||||||||
seq2  TTATTA---TCTGCAGCAGGAGCCATTCCAATATTCTTTCAAAATATAGA  47

seq1  -GTGT-TTTATCCTTACAATG-TCCTAAAGGTTTAA-TTCTTTAATATCA  93
       |||| |||||| |||||||| ||||||||| | || |||||| ||||||
seq2  GGTGTGTTTATCGTTACAATGTTCCTAAAGGCTAAATTTCTTTGATATCA  97

seq1  GAAC-ATTTGGTATATATATAAAAGATATAG-AAGAATATCTAATTTTTC  141
      |||| || |||||||||||| ||||   ||| ||||||||||||||||||
seq2  GAACAATCTGGTATATATAT-AAAGCACTAGAAAGAATATCTAATTTTTC  146

seq1  CATTATCAGTTTCTATCTT-AATGCTTAGAGGCAATGCTTTTCATCAAA-  189
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CATTATCAGTTTCTATCTTAAATGCTTAGAGGCAATGCTTTTCATCAAAC  196

seq1  CACTAGA-TTCTCCATTATCATTTCAACTTGGGAAATT-GGACTCTGACA  237
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CACTAGATTTCTCCATTATCATTTCAACTTGGGAAATTGGGACTCTGACA  246

seq1  TTTCAGCACATAAGAATGACAGC-ATAAATTGATGACATTACAGGCACCC  286
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCAGCACATAAGAATGACAGCAATAAATTGATGACATTACAGGCACCC  296

seq1  TCAGATATATATAACTTTTTATGTGGGTGCTTGGTATTTGAACTCCTATT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATATATAACTTTTTATGTGGGTGCTTGGTATTTGAACTCCTATT  346

seq1  CCTCTTTACCGATCAACTGCTTTTATCTGCGGAGCTCTCTCCCCAACACT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTACCGATCAACTGCTTTTATCTGCGGAGCTCTCTCCCCAACACT  396

seq1  ATCTA-TTATTTTTTCCCATTAACTTGTTGATAGATCCTGAAT-AAATTA  434
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTATTTATTTTTTCCCATTAACTTGTTGATAGATCCTGAATAAAATTA  446

seq1  TATCATATTCCCTTTGAGAAAGACAGTTCTTAATTTGTGTCTATTCTATT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTCCCTTTGAGAAAGACAGTTCTTAATTTGTGTCTATTCTATT  496

seq1  ATTGAATTTTGGTTCCTAGAAAGGATGTAAAATGAACAAGACCACATGAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTTGGTTCCTAGAAAGGATGTAAAATGAACAAGACCACATGAG  546

seq1  TTACTACTCTTATCTAGACAGTGTTTTCTCAGTTAGGAACATGCTGGATC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTCTTATCTAGACAGTGTTTTCTCAGTTAGGAACATGCTGGATC  596

seq1  ATTTCCTTTCTTTAGTCTTACGTTTAATAATATATTATGTCCATTATCTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTCTTTAGTCTTACGTTTAATAATATATTATGTCCATTATCTG  646

seq1  TAATTTAATTAACATTAGTTTTTTAATGTCATAGGCACTAAGATGATAAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTAACATTAGTTTTTTAATGTCATAGGCACTAAGATGATAAT  696

seq1  AATCTTCATCTCCATATCTCACAAAACTTGTATGAAGTTAGTAAACCAAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCATCTCCATATCTCACAAAACTTGTATGAAGTTAGTAAACCAAA  746

seq1  AACTGTAGAACTAATATAATACCAGGATCAATGGGTCATTTTTTTTTGCC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGAACTAATATAATACCAGGATCAATGGGTCATTTTTTTTTGCC  796

seq1  TTGGCATCAATAACAGGACAAAGTGAGATAATAATACCATAACTATAGAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCAATAACAGGACAAAGTGAGATAATAATACCATAACTATAGAT  846

seq1  AACATTTCATGGCAAAATATTGATAAGAATATTGAGAGATATCGAGAAAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCATGGCAAAATATTGATAAGAATATTGAGAGATATCGAGAAAT  896

seq1  AAACAAACAGAGTTGCCCTCCTTTGATTCATTGCAATGTGTGGTGCATTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGAGTTGCCCTCCTTTGATTCATTGCAATGTGTGGTGCATTT  946

seq1  TACACAATGGAATAATATTCAGCTATTAAAAAACAAGGACATCATGAATG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATGGAATAATATTCAGCTATTAAAAAACAAGGACATCATGAATG  996

seq1  TTGCAATTTTGTTTCCTAAGTCATACAGGATGACAACTATTTACATAGAC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTTTGTTTCCTAAGTCATACAGGATGACAACTATTTACATAGAC  1046

seq1  TTTGCATTTTTAAAAATAATATGAGCCCGTTAAAAATATAGTTAAATACA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTTAAAAATAATATGAGCCCGTTAAAAATATAGTTAAATACA  1096

seq1  ATTAATATTCAAGTTAAAATATATGGAATTC  1115
      |||||||||||||||||||||||||||||||
seq2  ATTAATATTCAAGTTAAAATATATGGAATTC  1127


seq1: chr16_68213066_68214173
seq2: B6Ng01-204I05.g_67_1173

seq1  GAATTCTCTGGAAGACAGGGTTAGGGAGGAATGGGACTAGGAACATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAAGACAGGGTTAGGGAGGAATGGGACTAGGAACATCCAG  50

seq1  GGGTCTAACCATGAAGGGGATAAAGGCTGGACTGTAAAAAAGGATTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAACCATGAAGGGGATAAAGGCTGGACTGTAAAAAAGGATTTAAG  100

seq1  ATTAAAAAAAATTATAAAAACAAGAAGTAAGAGAAACAATTACAGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAATTATAAAAACAAGAAGTAAGAGAAACAATTACAGAAATC  150

seq1  ATTTTGATAAAGGAGAGTGTAATTTTAAAACTCTACACATGACTGGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATAAAGGAGAGTGTAATTTTAAAACTCTACACATGACTGGCACC  200

seq1  TGGAGGTACCTTTTGGGTTAAATAACTTAGCATTTTATTTCACATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTACCTTTTGGGTTAAATAACTTAGCATTTTATTTCACATTTATA  250

seq1  TGACTAGCTTAAATGTACATGTGTATAGGTATGTATATGCTGATTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGCTTAAATGTACATGTGTATAGGTATGTATATGCTGATTGGGTT  300

seq1  TTAAGTTTCCATAACAACATAGAGCAGGAAATAATTGTAGAAGTGTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCCATAACAACATAGAGCAGGAAATAATTGTAGAAGTGTGGGC  350

seq1  CTGTGTACCACAGACTTTCCACAGAGATTTCTGACCCAGCCTGGTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACCACAGACTTTCCACAGAGATTTCTGACCCAGCCTGGTTGCTA  400

seq1  GAGTTCTAACAAAGGGAAGCAAATGTGGGCAGGGAGGGGAAGTAGCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAACAAAGGGAAGCAAATGTGGGCAGGGAGGGGAAGTAGCTTCC  450

seq1  ACTGCTTCTGCTGCTGCAGTTGGCTCCACCTCCTTATCCGCAGTTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCTGCTGCTGCAGTTGGCTCCACCTCCTTATCCGCAGTTCCTTC  500

seq1  CAGGTTACTCGGTTATGCTGCATGCTGCCCTGCACTGAGTAGGTCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACTCGGTTATGCTGCATGCTGCCCTGCACTGAGTAGGTCAGGCT  550

seq1  GGGCCCACGAAAGATCTACTTCAGGAGAGCAGACCTCTTCCCAAGTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCACGAAAGATCTACTTCAGGAGAGCAGACCTCTTCCCAAGTGTTA  600

seq1  CAGCTCAGCCCACTGGCCCTCATAGAAGAACCTATAATTATAGATATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCCCACTGGCCCTCATAGAAGAACCTATAATTATAGATATTAA  650

seq1  ATTTTTTAGGGCATTACCAATCCAACAACAGAGAAATTTAAACAACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAGGGCATTACCAATCCAACAACAGAGAAATTTAAACAACACAT  700

seq1  AAACAACACAGTTTCCAAATATAGAGAGACTATTCAAACAATTACAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACAGTTTCCAAATATAGAGAGACTATTCAAACAATTACAAAAC  750

seq1  ATAAGCACGATATTTACATTTCTGTATTAAAATTCCGGG-TTCTTTAAAG  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAAGCACGATATTTACATTTCTGTATTAAAATTCCGGGTTTCTTTAAAG  800

seq1  TCAGTGATATAAAACAAAGTCTAGGAAATAAAGATTTTAAGGA-TTCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGTGATATAAAACAAAGTCTAGGAAATAAAGATTTTAAGGATTTCAGA  850

seq1  AGCAAAGAATGTCACCATTGCGAAAGAAATGGCTGCCAAAGACAACTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCAAAGAATGTCACCATTGCGAAAGAAATGGCTGCCAAAGAC-ACTAGA  899

seq1  GAAGCTGCAAAGCAGAC-TATGTTGACAAGCATCTTAAGTGGTAGAGTGA  947
      |||||||| |||||||| ||||||||| ||||||||||||||||||||||
seq2  GAAGCTGC-AAGCAGACTTATGTTGAC-AGCATCTTAAGTGGTAGAGTGA  947

seq1  TACGGGGTTTTTGACTGCAGAAATAGCTCATAAACGTCAAACAATTTTGT  997
      ||| ||||||||||||||||||||||||||| |||||| |||| ||||||
seq2  TAC-GGGTTTTTGACTGCAGAAATAGCTCATTAACGTC-AACATTTTTGT  995

seq1  TCAGATCACTGCTTAC-TTACTTGTA-TTACGTATAAAACCTGTTCTG-T  1044
      |||||||||||||||| ||||||||| |||||||||||| |||||||| |
seq2  TCAGATCACTGCTTACTTTACTTGTATTTACGTATAAAA-CTGTTCTGTT  1044

seq1  GAGTGATGCATTATTT--CTAAGGTTATTAACAATTGTATAAAGATTATA  1092
      ||||||||||||||||   ||| |||||||   |||||||||   |||| 
seq2  GAGTGATGCATTATTTTCTTAAAGTTATTA--CATTGTATAAGATTTATT  1092

seq1  GAAAAGGTGTTCACAA  1108
        ||||||| ||||||
seq2  AGAAAGGTG-TCACAA  1107


| Home | SequenceCutter | Blast | Download |