BAC Information

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BAC

Clone NameB6Ng01-204O20
Chromosome16 (Build37)
Map Location 61,316,076 - 61,460,076
singlet/doubletdoublet
Overlap geneLOC668183
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204O20.bB6Ng01-204O20.g
ACCGA024740GA024741
length1,1641,087
definitionB6Ng01-204O20.b B6Ng01-204O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,458,932 - 61,460,076)(61,316,076 - 61,316,708)
sequence
gaattctcctaactgacaataaaatctgggcctgagagtccttaactgtt
tccatttccaaatgcagagaccctgcatgtggcaaattctgctaaagaaa
ctctctttactgttgcatattatttagtctggggtatcattcttcagtga
aatatagacccttacacttagtatcatggaagtaatgatgaaaaaataat
atttttaatataaatgataaaaacatggacacacactgaagtagaggtgc
tatagaaatttcagtgctgaattcttttattcactgtcatctgtcataag
acaaaaacacttattatttttgcactacactgaaacaactagagaaagca
agagaagaaaataagagtatggcaaatatgtctgtccaaactcatcacat
tgtatatattgaatatatgtactttactcataataaagttgtgaataaaa
ctgaaatcaaagaaagactattaattagtagaagtaaaaacagcaagtga
aactgagaataaaacatgttatgaattgcctggttttaagttggaatcat
tttaaatactaaattaagtcaaatataatcctttttactaattcatcctc
attttaatttttcatgtttgaaaatgtgtccttacaaagtttactccatt
catcttcttccatttccctttttaggcataatgttttgtatgctgagtaa
agtttacccttgagttactgtgatgcttatatcttgaatctcctttctca
agtttgtgtaaacagttatcatttattatgtaccttgtcaataaatgctg
atcaccctatagctgtgcagaagagcgaatagtgtggagtgtccactaga
aagaggacggagagacagatggccagggaaggacagaggaactggagcca
cgaacaaagggatccaaagatccagaatcaattattaattatattatcat
ggaataggcctgagaggcagcccagatttagcaagttttagggaaacacc
ctatatctgctcagctgcttaggcgcagttttaaataaatcttgggtttt
ctctgtggaggttctgggccaattaagcataaggtagataattgcaggcc
accagaattaaatttcactgccttacatttatattaagaaatatccatca
tatccttccctaaa

gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcaatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctgaccttaacttttcctcaggttcaagacccttggaaaggcctg
tatacttattttgtgcaccatgttttctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaatccgccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttttaacacta
gaaaaagttcaaggccaaacataccttataaagctattttccactttact
tctgatagactgtcttgaatttccttagaaagttcaaggccaggcttacc
tcgtaaagctatactcactggtactctcgttccccagctgaaaagttctg
aattcatacagttgaatccttcttaacagtctgctttacgggaaccttta
ttaccgcgacccgcagttctggttctggaatgagggatcttccttgcgcc
agtcccgagttttttctcgtcccgggtttcggcaccaattgttattagac
gcgttctcacgaccggccaggaagacgcaacaaaccagaatcttctgcgg
caaagctttattgcttacatcttcaggagccagagtgcaagagagcaagc
ccgcaaatggcgaaaccccatccctttttaaggagaattatcctccacct
aggatgtattactccctgattggctgcagcccatcggcccagttgtcatc
acgggaaaggcagaacacatggtgggaaaactgcccctgcatgtgtgcag
actatgtttaccacttagacacagctgtcagtgccatcttatatggcaaa
tgtgaggcgctcctcacactttgtatcagatgcatgcattagaaaaacag
agtctcagataatgcttgtctgtctcatttactcacagatcctatcctat
atttgcagtaccttgccatacaacaaatgcaaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_61458932_61460076
seq2: B6Ng01-204O20.b_46_1209 (reverse)

seq1  TTTAGGGAAGGATATGAATGAATTATTCTTAATATAAATGTAA-GCAGTG  49
      |||||||||||||||| ||| ||  |||||||||||||||||| ||||||
seq2  TTTAGGGAAGGATATG-ATGGATATTTCTTAATATAAATGTAAGGCAGTG  49

seq1  AA--TTAA-TCTGGTGG-CTGCAATTATCTACCTTATGC-TAATT-GCCA  93
      ||  |||| |||||||| ||||||||||||||||||||| ||||| ||| 
seq2  AAATTTAATTCTGGTGGCCTGCAATTATCTACCTTATGCTTAATTGGCCC  99

seq1  AGAA-CTCCACAGAGAAA--CCAAGATTTATTTAAAACTGCGCCTAAGCA  140
      |||| |||||||||||||  ||||||||||||||||||||||||||||||
seq2  AGAACCTCCACAGAGAAAACCCAAGATTTATTTAAAACTGCGCCTAAGCA  149

seq1  GCTGAGCAGATATAGGGTGTTTCC--TAAACTTGCT-AATCT-GGCTGCC  186
      ||||||||||||||||||||||||   ||||||||| ||||| |||||||
seq2  GCTGAGCAGATATAGGGTGTTTCCCTAAAACTTGCTAAATCTGGGCTGCC  199

seq1  TCTCAGGCCTATTCCATGAT-ATATA--TTATTATTGA-TCTGGATCTTT  232
      |||||||||||||||||||| |||||  | || ||||| |||||||||||
seq2  TCTCAGGCCTATTCCATGATAATATAATTAATAATTGATTCTGGATCTTT  249

seq1  GGATCCC-TTGTTCGTGGCTCCAGTTCCTCTGTCC-TCCCTGGCCATCTG  280
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GGATCCCTTTGTTCGTGGCTCCAGTTCCTCTGTCCTTCCCTGGCCATCTG  299

seq1  TCTCTCCGTCCTCTTTCTAGTGGACACTCCACACTATTCGCTCTTCTGCA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCGTCCTCTTTCTAGTGGACACTCCACACTATTCGCTCTTCTGCA  349

seq1  CAGCTATAGGGTGATCAGCATTTATTGACAAGGTACATAATAAATGATAA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAGGGTGATCAGCATTTATTGACAAGGTACATAATAAATGATAA  399

seq1  CTGTTTACACAAACTTGAGAAAGGAGATTCAAGATATAAGCATCACAGTA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACACAAACTTGAGAAAGGAGATTCAAGATATAAGCATCACAGTA  449

seq1  ACTCAAGGGTAAACTTTACTCAGCATACAAAACATTATGCCTAAAAAGGG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGGTAAACTTTACTCAGCATACAAAACATTATGCCTAAAAAGGG  499

seq1  AAATGGAAGAAGATGAATGGAGTAAACTTTGTAAGGACACATTTTCAAAC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGAAGATGAATGGAGTAAACTTTGTAAGGACACATTTTCAAAC  549

seq1  ATGAAAAATTAAAATGAGGATGAATTAGTAAAAAGGATTATATTTGACTT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTAAAATGAGGATGAATTAGTAAAAAGGATTATATTTGACTT  599

seq1  AATTTAGTATTTAAAATGATTCCAACTTAAAACCAGGCAATTCATAACAT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTATTTAAAATGATTCCAACTTAAAACCAGGCAATTCATAACAT  649

seq1  GTTTTATTCTCAGTTTCACTTGCTGTTTTTACTTCTACTAATTAATAGTC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCTCAGTTTCACTTGCTGTTTTTACTTCTACTAATTAATAGTC  699

seq1  TTTCTTTGATTTCAGTTTTATTCACAACTTTATTATGAGTAAAGTACATA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATTTCAGTTTTATTCACAACTTTATTATGAGTAAAGTACATA  749

seq1  TATTCAATATATACAATGTGATGAGTTTGGACAGACATATTTGCCATACT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATATATACAATGTGATGAGTTTGGACAGACATATTTGCCATACT  799

seq1  CTTATTTTCTTCTCTTGCTTTCTCTAGTTGTTTCAGTGTAGTGCAAAAAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTTCTCTTGCTTTCTCTAGTTGTTTCAGTGTAGTGCAAAAAT  849

seq1  AATAAGTGTTTTTGTCTTATGACAGATGACAGTGAATAAAAGAATTCAGC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGTTTTTGTCTTATGACAGATGACAGTGAATAAAAGAATTCAGC  899

seq1  ACTGAAATTTCTATAGCACCTCTACTTCAGTGTGTGTCCATGTTTTTATC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATTTCTATAGCACCTCTACTTCAGTGTGTGTCCATGTTTTTATC  949

seq1  ATTTATATTAAAAATATTATTTTTTCATCATTACTTCCATGATACTAAGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTAAAAATATTATTTTTTCATCATTACTTCCATGATACTAAGT  999

seq1  GTAAGGGTCTATATTTCACTGAAGAATGATACCCCAGACTAAATAATATG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTCTATATTTCACTGAAGAATGATACCCCAGACTAAATAATATG  1049

seq1  CAACAGTAAAGAGAGTTTCTTTAGCAGAATTTGCCACATGCAGGGTCTCT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAAAGAGAGTTTCTTTAGCAGAATTTGCCACATGCAGGGTCTCT  1099

seq1  GCATTTGGAAATGGAAACAGTTAAGGACTCTCAGGCCCAGATTTTATTGT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGAAATGGAAACAGTTAAGGACTCTCAGGCCCAGATTTTATTGT  1149

seq1  CAGTTAGGAGAATTC  1145
      |||||||||||||||
seq2  CAGTTAGGAGAATTC  1164


seq1: chr16_61316076_61316708
seq2: B6Ng01-204O20.g_543_1154

seq1  CTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTA  50

seq1  ACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTC  100

seq1  TGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGG  150

seq1  GTTTCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGG-AAG  199

seq1  ACGCAACAAACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAACAAACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTC  249

seq1  AGGAGCCAGAGTGCAAGAGAGCAAGCCCGCAAATGGCGAAACCCCATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAGAGTGCAAGAGAGCAAGCCCGCAAATGGCGAAACCCCATCCC  299

seq1  TTTTTAAGGAGAATTATCCTCCACCTAGGATGTATTACTCCCTGATTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGGAGAATTATCCTCCACCTAGGATGTATTACTCCCTGATTGGC  349

seq1  TGCAGCCCATCGGCCCAGTTGTCATCACGGGAAAGGCAGAACACATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCATCGGCCCAGTTGTCATCACGGGAAAGGCAGAACACATGGTG  399

seq1  GGAAAACTGCCCCTGCATGTGTGCAGACTATGTTTACCACTTAGAACACA  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAAAACTGCCCCTGCATGTGTGCAGACTATGTTTACCACTTAG-ACACA  448

seq1  GCTGTCAGTGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACAAC  500
      ||||||||||||||||||| |||||||||||||||   ||||||||| ||
seq2  GCTGTCAGTGCCATCTTAT-ATGGCAAATGTGAGG--CGCTCCTCAC-AC  494

seq1  TTTGTATCAGATGCATGCATTTAGAAAAACAAGAGTCTCAGATAATTGCT  550
      ||||||||||||||||||| |||||||||| |||||||||||||| ||||
seq2  TTTGTATCAGATGCATGCA-TTAGAAAAAC-AGAGTCTCAGATAA-TGCT  541

seq1  TGTTCTGTCTTCATTTACTCACAGTATCCCTATCTTAATTAATTTTTGCA  600
      || |||||| |||||||||||||| || |||||| |     || ||||||
seq2  TG-TCTGTC-TCATTTACTCACAG-AT-CCTATCCT-----ATATTTGCA  582

seq1  GTACCTTTGCCCATACAACAAAATGCAAAAATG  633
      |||||||   ||||||||| |||||||||||||
seq2  GTACCTT--GCCATACAAC-AAATGCAAAAATG  612


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