BAC Information

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BAC

Clone NameB6Ng01-210M06
Chromosome16 (Build37)
Map Location 60,644,213 - 60,752,017
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210M06.bB6Ng01-210M06.g
ACCGA029020GA029021
length1,1211,122
definitionB6Ng01-210M06.b B6Ng01-210M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,750,880 - 60,752,017)(60,644,213 - 60,645,335)
sequence
gaattctttcacattttctctaccctcaaattacaatttcaaataatcat
atttagaagttgaaatgacagagtaacacaaagggatttaaatacactgc
tgtgtatgtgcataaagtcatctgttagtggcatttgtaatttcaaatta
taaaacaatcaaatagtatacatctgcgagagcagtataataaactagag
aaacactcaatggtctacagcacattattacaaaaatgtatatgagcatt
ttatgctgtatgtaaaaatatagaatgatttctaaaatatattacttaaa
atttaaaaagaatgtacatcttaggataatgttgacacagaaagaagaaa
gaaataagaaaatatatatgtatcttattatcagtaaaataaaacaaact
gagaagaaaactaaacagaaaagactgaaataagtttcatggtgcaagga
gaaaggccataaagggacaactgtaaattggaatcgttttgtgcatatat
acatacatagtccacaatcataatttttatgacaaataaaatataaaact
agcaaaaactatcttctctctgtgaagtaactcccaattcaaagtacatg
tagaaatgattttccttatttattgtcttaaatatattcttaagttcttt
actgaaatgttttaaatgcctcttttgtttgagtgaaacctaacaaacaa
aacaaaacaaaacgaaataaaaaataaactaagaaaaatctaaaagctat
agtctcagtcacagatgtacccttcgtaacaaattatacttcctcaatct
tatttcataaaacataatttaaaagatcaaatgctttaaaccaaattacc
atgaaaaacttttgttttcttcatgtggtgtttgaaaggaaactaaaatg
acttgtaaatacccaataggaaaaaaacatccagtctttttctcacctcc
tccaaatccctctatatatttatgatataaatgtatacatttaagagatc
ttgatgtgtaattagctgatagattttttttcataaaattacttggtcat
taaatcattgacatgctcttgcttcactagtttctctgctcttctctgtt
tctccccctgtctctcattac

gaattctttgctcttaaagaagcttatataagagtttctatttgatattg
gaattcaaaatttttatcaggatatatggaggtaaatgaccttttttatt
aatcctctctgggactcagaaaccttgtcaacctgcagcctcacatcttt
catcaaataaagaaaactttcattatttgtttaaatattacctctcctct
ataatttcctctgttttattttagaatctttttatacacccgaaaagtct
cctgctgctcttctcaggaactcactgttttactaatgctccttgtaatt
tatactgtttctatggggtttaaagtttctgtgtatctttctatcaacta
actttcaaccatatttttttacttaaaatattaagcatcaaaatattctc
ttgtgctttgtgatgtactgtggtgtatgtcctatacacatgtgatcatg
tattttcctgggtatgaacatagagaccagaggatcttgctgagggctac
tctaaaaatctcaacttcgcttttttgagacaaaatctcccaatcaactc
tgaactcctgttttttgatatggttagtggcaagttagctccaaggatct
gcctatctctttctaccaatgctggagttataaatatgccaatttgttgt
tgttttttgtttgcttgtttgttctctgtaggtgctatgaatttgaactc
aagacctcatgtttgcccagtaagcagttttacttattgagccatctctt
cagtctctatactttttttttctccacagaaaaatcttagtttatctctt
ctgatgttttcttgacttaattctcagatagcaatttttttctttcccct
gtacttttgttgttgttgttgttgttgtttgctttcttttttgtttgctg
ctgctgctgcagtttctgtttcgttattttatttatttttattttatttt
ttatgagacagggttttgttgtgtagcctgctatcccgggactcagtttg
taagaccattctggcctcagactcactgagatctgcctgcctcttgtctc
attagtgatggatcatacactgccatatactctgcctcttcgcctgtgct
ttacataatctgcatttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60750880_60752017
seq2: B6Ng01-210M06.b_45_1165 (reverse)

seq1  GTAATGAGGAGACAGGGGGGAAGGAAAACAGAGAAAGAGCAAGAGGAAAA  50
      ||||||| |||||||||||  ||  |||||||| |||||| ||||  |||
seq2  GTAATGA-GAGACAGGGGG--AG--AAACAGAG-AAGAGC-AGAG--AAA  41

seq1  CTAAGTGAAGGCAAGAGCAATGTCAAATGATTTTAATGACCAAGTAATTT  100
      || |||||| |||||||| ||||| ||||| |||||||||||||||||||
seq2  CT-AGTGAA-GCAAGAGC-ATGTC-AATGA-TTTAATGACCAAGTAATTT  86

seq1  TATTGAAAAAAAATCTATTCAGCTAATTACACATCAAGATCTCTTAAATG  150
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TA-TGAAAAAAAATCTA-TCAGCTAATTACACATCAAGATCTCTTAAATG  134

seq1  TATACATTTTATATCATAAATATATAGAGGGATTTGGAGGAGGTGAGAAA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATACA-TTTATATCATAAATATATAGAGGGATTTGGAGGAGGTGAGAAA  183

seq1  AAGACTGGATGTTTTTTTCCTATTGGGTATTTACAAGTCATTTTAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGATGTTTTTTTCCTATTGGGTATTTACAAGTCATTTTAGTTTC  233

seq1  CTTTCAAACACCACATGAAGAAAACAAAAGTTTTTCATGGTAATTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACACCACATGAAGAAAACAAAAGTTTTTCATGGTAATTTGGTT  283

seq1  TAAAGCATTTGATCTTTTAAATTATGTTTTATGAAATAAGATTGAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTGATCTTTTAAATTATGTTTTATGAAATAAGATTGAGGAAG  333

seq1  TATAATTTGTTACGAAGGGTACATCTGTGACTGAGACTATAGCTTTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGTTACGAAGGGTACATCTGTGACTGAGACTATAGCTTTTAGA  383

seq1  TTTTTCTTAGTTTATTTTTTATTTCGTTTTGTTTTGTTTTGTTTGTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAGTTTATTTTTTATTTCGTTTTGTTTTGTTTTGTTTGTTAGG  433

seq1  TTTCACTCAAACAAAAGAGGCATTTAAAACATTTCAGTAAAGAACTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCAAACAAAAGAGGCATTTAAAACATTTCAGTAAAGAACTTAAG  483

seq1  AATATATTTAAGACAATAAATAAGGAAAATCATTTCTACATGTACTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTAAGACAATAAATAAGGAAAATCATTTCTACATGTACTTTGA  533

seq1  ATTGGGAGTTACTTCACAGAGAGAAGATAGTTTTTGCTAGTTTTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAGTTACTTCACAGAGAGAAGATAGTTTTTGCTAGTTTTATATTT  583

seq1  TATTTGTCATAAAAATTATGATTGTGGACTATGTATGTATATATGCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCATAAAAATTATGATTGTGGACTATGTATGTATATATGCACAA  633

seq1  AACGATTCCAATTTACAGTTGTCCCTTTATGGCCTTTCTCCTTGCACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATTCCAATTTACAGTTGTCCCTTTATGGCCTTTCTCCTTGCACCAT  683

seq1  GAAACTTATTTCAGTCTTTTCTGTTTAGTTTTCTTCTCAGTTTGTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTATTTCAGTCTTTTCTGTTTAGTTTTCTTCTCAGTTTGTTTTAT  733

seq1  TTTACTGATAATAAGATACATATATATTTTCTTATTTCTTTCTTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGATAATAAGATACATATATATTTTCTTATTTCTTTCTTCTTTCT  783

seq1  GTGTCAACATTATCCTAAGATGTACATTCTTTTTAAATTTTAAGTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAACATTATCCTAAGATGTACATTCTTTTTAAATTTTAAGTAATAT  833

seq1  ATTTTAGAAATCATTCTATATTTTTACATACAGCATAAAATGCTCATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAAATCATTCTATATTTTTACATACAGCATAAAATGCTCATATA  883

seq1  CATTTTTGTAATAATGTGCTGTAGACCATTGAGTGTTTCTCTAGTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTAATAATGTGCTGTAGACCATTGAGTGTTTCTCTAGTTTATT  933

seq1  ATACTGCTCTCGCAGATGTATACTATTTGATTGTTTTATAATTTGAAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTCTCGCAGATGTATACTATTTGATTGTTTTATAATTTGAAATT  983

seq1  ACAAATGCCACTAACAGATGACTTTATGCACATACACAGCAGTGTATTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCCACTAACAGATGACTTTATGCACATACACAGCAGTGTATTTA  1033

seq1  AATCCCTTTGTGTTACTCTGTCATTTCAACTTCTAAATATGATTATTTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTTGTGTTACTCTGTCATTTCAACTTCTAAATATGATTATTTGA  1083

seq1  AATTGTAATTTGAGGGTAGAGAAAATGTGAAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATTTGAGGGTAGAGAAAATGTGAAAGAATTC  1121


seq1: chr16_60644213_60645335
seq2: B6Ng01-210M06.g_63_1184

seq1  GAATTCTTTGCTCTTAAAGAAGCTTATATAAGAGTTTCTATTTGATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTCTTAAAGAAGCTTATATAAGAGTTTCTATTTGATATTG  50

seq1  GAATTCAAAATTTTTATCAGGATATATGGAGGTAAATGACCTTTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTTTTATCAGGATATATGGAGGTAAATGACCTTTTTTATT  100

seq1  AATCCTCTCTGGGACTCAGAAACCTTGTCAACCTGCAGCCTCACATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTCTGGGACTCAGAAACCTTGTCAACCTGCAGCCTCACATCTTT  150

seq1  CATCAAATAAAGAAAACTTTCATTATTTGTTTAAATATTACCTCTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATAAAGAAAACTTTCATTATTTGTTTAAATATTACCTCTCCTCT  200

seq1  ATAATTTCCTCTGTTTTATTTTAGAATCTTTTTATACACCCGAAAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCCTCTGTTTTATTTTAGAATCTTTTTATACACCCGAAAAGTCT  250

seq1  CCTGCTGCTCTTCTCAGGAACTCACTGTTTTACTAATGCTCCTTGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTCTTCTCAGGAACTCACTGTTTTACTAATGCTCCTTGTAATT  300

seq1  TATACTGTTTCTATGGGGTTTAAAGTTTCTGTGTATCTTTCTATCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTTTCTATGGGGTTTAAAGTTTCTGTGTATCTTTCTATCAACTA  350

seq1  ACTTTCAACCATATTTTTTTACTTAAAATATTAAGCATCAAAATATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAACCATATTTTTTTACTTAAAATATTAAGCATCAAAATATTCTC  400

seq1  TTGTGCTTTGTGATGTACTGTGGTGTATGTCCTATACACATGTGATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTGTGATGTACTGTGGTGTATGTCCTATACACATGTGATCATG  450

seq1  TATTTTCCTGGGTATGAACATAGAGACCAGAGGATCTTGCTGAGGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTGGGTATGAACATAGAGACCAGAGGATCTTGCTGAGGGCTAC  500

seq1  TCTAAAAATCTCAACTTCGCTTTTTTGAGACAAAATCTCCCAATCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATCTCAACTTCGCTTTTTTGAGACAAAATCTCCCAATCAACTC  550

seq1  TGAACTCCTGTTTTTTGATATGGTTAGTGGCAAGTTAGCTCCAAGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCTGTTTTTTGATATGGTTAGTGGCAAGTTAGCTCCAAGGATCT  600

seq1  GCCTATCTCTTTCTACCAATGCTGGAGTTATAAATATGCCAATTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCTCTTTCTACCAATGCTGGAGTTATAAATATGCCAATTTGTTGT  650

seq1  TGTTTTTTGTTTGCTTGTTTGTTCTCTGTAGGTGCTATGAATTTGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTTTGCTTGTTTGTTCTCTGTAGGTGCTATGAATTTGAACTC  700

seq1  AAGACCTCATGTTTGCCCAGTAAGCAGTTTTACTTATTGAGCCATCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCATGTTTGCCCAGTAAGCAGTTTTACTTATTGAGCCATCTCTT  750

seq1  CAGTCTCTATAC-TTTTTTTTCTCCACAGAAAAATCTTAGTTTATCTCTT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTATACTTTTTTTTTCTCCACAGAAAAATCTTAGTTTATCTCTT  800

seq1  CTGATGTTTTCTTGACTTAATTCTCAGATAGCAATTTTTTTCTTTCCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTTCTTGACTTAATTCTCAGATAGCAATTTTTTTCTTTCCCCT  850

seq1  GTACTTTTGTTGTTGTTGTTGTTGTTGTTTGCTTTCTTTTTTGTTTGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTGTTGTTGTTGTTGTTGTTGTTTGCTTTCTTTTTTGTTTGCTG  900

seq1  CTGCTGCTGCAGTTTCTGTTTTCGTTATTTTATTTTATTTTTATTTTATT  949
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  CTGCTGCTGCAGTTTCTG-TTTCGTTATTTTA-TTTATTTTTATTTTATT  948

seq1  TTTTATGAGACAGGGTTTTGTTGTGTAGCCCTGCTTATCCCGGGACTCAG  999
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  TTTTATGAGACAGGGTTTTGTTGTGTAG-CCTGC-TATCCCGGGACTCAG  996

seq1  TTTGT-AGACCATTCTGGCCTCAGACTCACTGAGATCTGCCTGCCTC-TG  1047
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGTAAGACCATTCTGGCCTCAGACTCACTGAGATCTGCCTGCCTCTTG  1046

seq1  TCTCCATAGTGATGGGATCATACACTGCC--ATACTCTGCCTCTTCGCCT  1095
      ||||  ||||||| |||||||||||||||  |||||||||||||||||||
seq2  TCTCATTAGTGAT-GGATCATACACTGCCATATACTCTGCCTCTTCGCCT  1095

seq1  GTGCCTTTACATTATCTGCTTTTCTTCC  1123
      ||| |||||||| |||||| ||||||||
seq2  GTG-CTTTACATAATCTGCATTTCTTCC  1122


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