BAC Information

Click to search

BAC

Clone NameB6Ng01-211E22
Chromosome1 (Build37)16 (Build37)
Map Location 190,148,943 - 190,150,67169,623,161 - 69,623,808
singlet/doubletsingletsinglet
Overlap geneUsh2a
Upstream geneGpatch2, Esrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211E22.bB6Ng01-211E22.g
ACCGA029409GA029410
length306648
definitionB6Ng01-211E22.b B6Ng01-211E22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(190,148,943 - 190,150,671)(69,623,161 - 69,623,808)
sequence
atggaataaaatgtcttccagatatagagtaaacacataagaactttcag
agactgtgaaaacatgtacaaaatagacaaaagtcccagcgctaaaagag
gaaagtggactcaaagtcttacccctaaccagtaaacaatttgcaattta
tatcttccaaaataataaaaaaaaatctcacgtggagtgtgctgtgtata
aggactataatgaaaagcaggatcaatgaaaaggaacaattaattaacac
aaaatttacgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtg
tgagag

gaattcttttgattgatgattgacatgtgagccacagcagcccactaagg
tctaggctgggtaagaaaactacccatacataagcaagaaagcaaaccaa
tgagccacgttcatccatggttcctgtctctaggtttgtaccttatgttt
ctaccttgcaatgtaatgatgatggaagtcgacctagcacagttctctct
ttgtgataaaacactatgaccaaaagaaaattaggggagtagagtgttta
ttcaattctagagtttctaggttactctccctaataattttctggaggca
cgggattgttgtctattttgaccagtcatccctatgaagtcggtacaaaa
gctgaaatgtgaagcatactgagtggagtgtaatttatgcagatttcttg
attacagtaattttggacaatggagcaccaattcaatacatcctaagttg
gaataataagtaaacagtaggatttttataacaaagctatcaggctaaag
taggggcaaacaggaggcagttaaagataaggacattgtatctgttttta
tgagctacattttcataacatatagaacataatagtgataatagtgataa
atgttgtcttccacctcatatagttccctcagatagatgtgtgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190148943_190150671
seq2: B6Ng01-211E22.b_208_356 (reverse)

seq1  CTCTCACACACACACACACATGCATGCTCTCTCTCTCTCTCTCACACACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACATACACACACACACACACCAGGCACACACACATTCATGCTCTCTCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTCTCTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTCTGTCTCTCTCTCACACACACACACCAGGCACACACACATGCATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACATTCATGCTCTCTCTGTCTCTCTCTCTGTCTCTCTGTCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTCTCTCACACACACA  350
                                                        
seq2  --------------------------------------------------  0

seq1  CACCAGGCACACACACATGCATGCTCTCTCTCTCTCTCTCTCTCTCTCTC  400
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCTCTTTCTCTCACACACACACCAGGCACACACATGCATGCTCT  450
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACA  500
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACACCAGGCACACACACATTCAT  550
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTGTCTCTCTC  600
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCACACACACACCAGGCACACACACATGCATGCTCGCTCTCTCTCTCT  650
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCACACACACATTCATGCT  700
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACCAGGCAC  750
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACATGCATGCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTC  800
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACACACACACACACACACCAGGCACACACACATGCATGCTCTCT  850
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGCACACACACACACACCAG  900
                                                        
seq2  --------------------------------------------------  0

seq1  GCACACACACATTCATGCTCTCTCTCTCTGTCTCTCTCTCTCTGTCTCTC  950
                                                        
seq2  --------------------------------------------------  0

seq1  TGTCTCTGTCTCTCTCTCTGTCTGTCTCTCTCTTTCTCTCTCTCTCTCAC  1000
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACACACACACATGCATGCTCTCTCTTTCTCTCTCTCTCTCTCTC  1050
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCACACACACACACACACACACACACACACACACCAGGCACACA  1100
                                                        
seq2  --------------------------------------------------  0

seq1  CACATTCATGCTCTCTCTCTCTGTCTCTCTCTCTCTGTCTGTCTCTCTCT  1150
                                                      ||
seq2  ------------------------------------------------CT  2

seq1  CTCACACACACACCAGGCACACACACATGCACTCACTCTCTCTCTCTCTC  1200
      ||||||||||||     ||||||||||                       
seq2  CTCACACACACA-----CACACACACA-----------------------  24

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCACACATATACACAC  1250
                                         |||||||| ||||||
seq2  -----------------------------------CACACATACACACAC  39

seq1  ACACACACAAATAAAAGTAAATCCTAAAATTAATATGTCAATTTTGAAAG  1300
      ||||||||        ||||||       ||  | ||| ||||       
seq2  ACACACAC--------GTAAAT-------TT--TGTGTTAATT-------  65

seq1  AATTGAGATGTATCCATCCAGTTCTCTAACCCATGGCAGTGATAGTTTCT  1350
      ||||                |||| ||                  |||| 
seq2  AATT----------------GTTC-CT------------------TTTCA  80

seq1  TCGTTTCAGCAATGGTTTGTTTTCCTGATAGAACACTTTTATCTGTTATA  1400
      | | | | ||         ||||| | ||||  |           |||||
seq2  TTGATCCTGC---------TTTTCATTATAGTCC-----------TTATA  110

seq1  CCTATTTCTGCATGCT-CAC-TGGGATTTTCTTCTAGTTGGCATTTT-AA  1447
      |      | |||  || ||| || |||||| || || |    |||||   
seq2  C-----ACAGCACACTCCACGTGAGATTTTTTTTTATT----ATTTTG--  149

seq1  AAATAGAATGTTTAAAGAAACCCCAAGAACATGTAAACTTTGTGTTTACT  1497
                                                        
seq2  --------------------------------------------------  149

seq1  CTCTACCTCCCTTACTAAACAGCAAGTTACCATCACCACCAGCAGCAACA  1547
                                                        
seq2  --------------------------------------------------  149

seq1  CCACAATATTTTGCTTTATAAAATGTTCATACTTTTGTGGTTTGACTCCA  1597
                                                        
seq2  --------------------------------------------------  149

seq1  AATATTTTAAAAACAATGACTAAATTTCTAAATTTTTGAATTCAACAAAC  1647
                                                        
seq2  --------------------------------------------------  149

seq1  AGGAATGAGTTTTAAATAGTTATATTTCTTTGGTCAAAAATATCTAGTCC  1697
                                                        
seq2  --------------------------------------------------  149

seq1  TGATGAGTTTCTGATTTTAATTTATTATTTTG  1729
                                      
seq2  --------------------------------  149


seq1: chr16_69623161_69623808
seq2: B6Ng01-211E22.g_65_712 (reverse)

seq1  AAACACACACATCTATCTGAGGGAACTATATGAGGTGGAAGACAACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACATCTATCTGAGGGAACTATATGAGGTGGAAGACAACATTT  50

seq1  ATCACTATTATCACTATTATGTTCTATATGTTATGAAAATGTAGCTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATTATCACTATTATGTTCTATATGTTATGAAAATGTAGCTCATA  100

seq1  AAAACAGATACAATGTCCTTATCTTTAACTGCCTCCTGTTTGCCCCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATACAATGTCCTTATCTTTAACTGCCTCCTGTTTGCCCCTACT  150

seq1  TTAGCCTGATAGCTTTGTTATAAAAATCCTACTGTTTACTTATTATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGATAGCTTTGTTATAAAAATCCTACTGTTTACTTATTATTCCA  200

seq1  ACTTAGGATGTATTGAATTGGTGCTCCATTGTCCAAAATTACTGTAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGATGTATTGAATTGGTGCTCCATTGTCCAAAATTACTGTAATCA  250

seq1  AGAAATCTGCATAAATTACACTCCACTCAGTATGCTTCACATTTCAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCATAAATTACACTCCACTCAGTATGCTTCACATTTCAGCTT  300

seq1  TTGTACCGACTTCATAGGGATGACTGGTCAAAATAGACAACAATCCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCGACTTCATAGGGATGACTGGTCAAAATAGACAACAATCCCGTG  350

seq1  CCTCCAGAAAATTATTAGGGAGAGTAACCTAGAAACTCTAGAATTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAAAATTATTAGGGAGAGTAACCTAGAAACTCTAGAATTGAATA  400

seq1  AACACTCTACTCCCCTAATTTTCTTTTGGTCATAGTGTTTTATCACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTACTCCCCTAATTTTCTTTTGGTCATAGTGTTTTATCACAAAG  450

seq1  AGAGAACTGTGCTAGGTCGACTTCCATCATCATTACATTGCAAGGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGTGCTAGGTCGACTTCCATCATCATTACATTGCAAGGTAGAA  500

seq1  ACATAAGGTACAAACCTAGAGACAGGAACCATGGATGAACGTGGCTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGTACAAACCTAGAGACAGGAACCATGGATGAACGTGGCTCATT  550

seq1  GGTTTGCTTTCTTGCTTATGTATGGGTAGTTTTCTTACCCAGCCTAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCTTTCTTGCTTATGTATGGGTAGTTTTCTTACCCAGCCTAGACC  600

seq1  TTAGTGGGCTGCTGTGGCTCACATGTCAATCATCAATCAAAAGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGGCTGCTGTGGCTCACATGTCAATCATCAATCAAAAGAATTC  648


| Home | SequenceCutter | Blast | Download |